GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002425-TA|BGIBMGA002425-PA|undefined
         (58 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   1.2  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    23   3.6  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    23   4.8  

>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKV 44
           ++ FG    LP GRRC     +      S  +   GI I  RKV
Sbjct: 202 LVGFGQTICLPRGRRCDMCTLSSKGLCPSAFKEKSGITITKRKV 245


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 14  RRCSALARNLHCRPESDAQLWLGICIA 40
           R C    R    +P+SDA+   G+C A
Sbjct: 117 RNCGVANRFTIIKPKSDARFSQGLCTA 143


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 598

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 28 ESDAQLWLGICIAGR 42
          +SD+Q WLG  +AGR
Sbjct: 74 DSDSQPWLGGYLAGR 88


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,248
Number of Sequences: 5004
Number of extensions: 6168
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 2,362,478
effective HSP length: 39
effective length of query: 19
effective length of database: 2,167,322
effective search space: 41179118
effective search space used: 41179118
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)