GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002425-TA|BGIBMGA002425-PA|undefined
         (58 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0388 + 43236629-43237612                                         26   4.4  

>01_07_0388 + 43236629-43237612
          Length = 327

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 6   SEFALPAGRRCSALARNLHCRPESDAQLWL 35
           S+FA  A R C A A  +H   E   Q WL
Sbjct: 258 SDFARLAARICPAYAHAIHRFEEGTTQPWL 287


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,850
Number of Sequences: 37544
Number of extensions: 55227
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 1
length of query: 58
length of database: 14,793,348
effective HSP length: 38
effective length of query: 20
effective length of database: 13,366,676
effective search space: 267333520
effective search space used: 267333520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)