GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002425-TA|BGIBMGA002425-PA|undefined
         (58 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)                       35   0.008
SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)                       35   0.008

>SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R LHCR     +L    C A    ML + +   LP+
Sbjct: 133 MFDYCTSAVLPSTRICSIIVRVLHCRAPEYVRLLYECCTAEHPNMLDYCTSTLLPS 188



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           ML + +   LP+ R CS + R L+CR    A+L    C A    M  + +   LP+
Sbjct: 177 MLDYCTSTLLPSTRICSIIVRVLYCRAPEYARLLYECCTAEHPNMFDYCTSTLLPS 232



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 1  MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
          ML + +   LP+ R CS + R L+CR     +L    C A    M  + +   LP+
Sbjct: 1  MLDYCTSAVLPSTRICSIIVRMLYCRAPEYVRLLYECCTAEHPNMFDYCTSTLLPS 56



 Score = 31.9 bits (69), Expect = 0.074
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+CR     +L    C A    M  + +   LP+
Sbjct: 89  MFDYCTNAVLPSTRICSIIVRMLYCRAPEYVRLLYECCTAEHPNMFDYCTSAVLPS 144



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+C     A+L    C A    M  + +   LP+
Sbjct: 45  MFDYCTSTLLPSTRICSIIVRVLYCLAPEYARLLYECCTAEHPNMFDYCTNAVLPS 100



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+C     A+L      A    M  + +   LP+
Sbjct: 221 MFDYCTSTLLPSTRICSIIVRVLYCGAPEYARLLYEYSTAEHPNMFGYCTSAVLPS 276


>SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R LHCR     +L    C A    ML + +   LP+
Sbjct: 133 MFDYCTSAVLPSTRICSIIVRVLHCRAPEYVRLLYECCTAEHPNMLDYCTSTLLPS 188



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           ML + +   LP+ R CS + R L+CR    A+L    C A    M  + +   LP+
Sbjct: 177 MLDYCTSTLLPSTRICSIIVRVLYCRAPEYARLLYECCTAEHPNMFDYCTSTLLPS 232



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 1  MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
          ML + +   LP+ R CS + R L+CR     +L    C A    M  + +   LP+
Sbjct: 1  MLDYCTSAVLPSTRICSIIVRMLYCRAPEYVRLLYECCTAEHPNMFDYCTSTLLPS 56



 Score = 31.9 bits (69), Expect = 0.074
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+CR     +L    C A    M  + +   LP+
Sbjct: 89  MFDYCTNAVLPSTRICSIIVRMLYCRAPEYVRLLYECCTAEHPNMFDYCTSAVLPS 144



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+C     A+L    C A    M  + +   LP+
Sbjct: 45  MFDYCTSTLLPSTRICSIIVRVLYCLAPEYARLLYECCTAEHPNMFDYCTNAVLPS 100



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 1   MLSFGSEFALPAGRRCSALARNLHCRPESDAQLWLGICIAGRKVMLSFGSEFALPA 56
           M  + +   LP+ R CS + R L+C     A+L      A    M  + +   LP+
Sbjct: 221 MFDYCTSTLLPSTRICSIIVRVLYCGAPEYARLLYEYSTAEHPNMFGYCTSAVLPS 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,735
Number of Sequences: 59808
Number of extensions: 50741
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 12
length of query: 58
length of database: 16,821,457
effective HSP length: 38
effective length of query: 20
effective length of database: 14,548,753
effective search space: 290975060
effective search space used: 290975060
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)