GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002425-TA|BGIBMGA002425-PA|undefined
         (58 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    18   8.3  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           18   8.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 23  LHCRPE 28
           LHC+PE
Sbjct: 349 LHCKPE 354


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 17 SALARNLHCRPESDAQLWLGICI 39
          SA A N H   ++      G+CI
Sbjct: 33 SACAANCHSLGKAGGHCEKGVCI 55


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108
Number of Sequences: 429
Number of extensions: 384
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 140,377
effective HSP length: 38
effective length of query: 20
effective length of database: 124,075
effective search space:  2481500
effective search space used:  2481500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)