GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002424-TA|BGIBMGA002424-PA|IPR000555|Mov34/MPN/PAD-1
         (404 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.97 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   5.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   9.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   9.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   9.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 191 FAAEPPQAPPHHYQPVPPLIPPSRPHNDSSLGGALYGSHRLRTVVVPXXXXXXXXXXXXD 250
           F A  P   PH+  P PP  P  + +    +GG +  +    +VV              D
Sbjct: 406 FEAPIPNVSPHYVTPTPPEAPLFQ-NVLPPIGGMMNWNMPSTSVVGDMLNMNWNPSAQND 464

Query: 251 NTTRNI-ETCGILAGILERNQLKITHVIVPKQSGTPDSCSTNNEEEIF 297
            +  N+ ET   ++ +L  +  ++    +   SG      TNN  E F
Sbjct: 465 LSGVNLSETPSGISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETF 512


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 151 LQADENKRDGNSTIPHLLNNEQWVVSPSAPAVDRVLYPDDFAAEPPQAP-PHH 202
           ++  EN   GNS    L  N  +  SP      ++L P    +E   +P P H
Sbjct: 155 IEDHENDTTGNSGEGSLQENRYYNNSPDQYQSYQILLPTPTCSEASSSPTPSH 207


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 199 PPHHYQPVPPLIPPSRPHNDS 219
           PP H+Q  PP++  ++P  +S
Sbjct: 95  PPIHHQIRPPILHDTQPMCES 115


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 199 PPHHYQPVPPLIPPSRPHNDS 219
           PP H+Q  PP++  ++P  +S
Sbjct: 95  PPIHHQIRPPILHDTQPMCES 115


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 199 PPHHYQPVPPLIPPSRPHNDS 219
           PP H+Q  PP++  ++P  +S
Sbjct: 95  PPIHHQIRPPILHDTQPMCES 115


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 186  LYPDDFAAEPPQAPPHHYQPVPPLI 210
            L PD+ + E    PP    P PP +
Sbjct: 993  LIPDNPSREDCTKPPEPVTPAPPQV 1017


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 200 PHHYQPVPPLIPP 212
           PH  +P PP  PP
Sbjct: 23  PHSPEPYPPRCPP 35


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 199 PPHHYQPVPPLIPPSRP 215
           PP H+Q  PP++  ++P
Sbjct: 95  PPIHHQIRPPILHDTQP 111


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,550
Number of Sequences: 317
Number of extensions: 4321
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 8
length of query: 404
length of database: 114,650
effective HSP length: 58
effective length of query: 346
effective length of database: 96,264
effective search space: 33307344
effective search space used: 33307344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)