GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002424-TA|BGIBMGA002424-PA|IPR000555|Mov34/MPN/PAD-1
         (404 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   8.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   8.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   8.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 292 NEEEIFHYQDQHNLITLGWIHTHPT-QTAFLSSVDLHTQCSYQLMMAEAI 340
           N +E  H  D H ++ L W  +H T +++   S++     SY++ + + +
Sbjct: 72  NVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 4  EEKRPKHVDLASMEPSARV 22
          EEK PK    AS+EP ++V
Sbjct: 80 EEKLPKTSSNASVEPDSKV 98


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 279  PKQSGTPDSCSTNNEEEIFHYQDQHNL 305
            P+Q           ++++ HY D HNL
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNL 1476


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 347 KYNETGYFALTPDYGMQFIAN 367
           KY+ TG +    ++G+QF  N
Sbjct: 104 KYDSTGEYKKRYEHGLQFAKN 124


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 347 KYNETGYFALTPDYGMQFIAN 367
           KY+ TG +    ++G+QF  N
Sbjct: 104 KYDSTGEYKKRYEHGLQFAKN 124


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 207 PPLIPPSRPHNDSSLGGALYGS 228
           P L PP  P N+    G + G+
Sbjct: 48  PVLFPPGPPPNNEDSSGVIVGA 69


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,512
Number of Sequences: 429
Number of extensions: 5346
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 404
length of database: 140,377
effective HSP length: 59
effective length of query: 345
effective length of database: 115,066
effective search space: 39697770
effective search space used: 39697770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)