GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   4.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    24   8.6  

>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 4   SIRPLPSQSSAQLGKRMCGDYAKVRVKDW 32
           S++PL S+   ++G  + G  A+V+ K W
Sbjct: 99  SVKPLRSKYVPEIGDLIIGKIAEVQPKRW 127


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 24  YAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQ 63
           Y K+  K WL+L P   +   +S+    T ++  E G G+
Sbjct: 357 YYKLLSKSWLSLEPVGQICISLSFSKRTTKRQFPETGLGR 396


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,752
Number of Sequences: 5004
Number of extensions: 22569
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 2,362,478
effective HSP length: 65
effective length of query: 63
effective length of database: 2,037,218
effective search space: 128344734
effective search space used: 128344734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)