GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0307 - 16546692-16546791,16548107-16548336                       81   3e-16
01_01_0114 - 851249-852372,852577-852740,852838-853568                 28   2.7  
06_01_0052 + 453923-454179,454265-454494,454952-455062,455200-45...    27   3.5  

>07_03_0307 - 16546692-16546791,16548107-16548336
          Length = 109

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 58  EAGSGQINPCIRKDINKVVDFIDIEDITEKAS-LCRCWRSKNWPYCDGSHGPHNKETGDN 116
           EAG G INP IRK+  KVVD +   ++++  +  CRCWRS  +P CDGSH  HNK TGDN
Sbjct: 42  EAGVGGINPSIRKEEEKVVDTVLAGELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN 101

Query: 117 TGPVVVR 123
            GP++V+
Sbjct: 102 VGPLLVK 108


>01_01_0114 - 851249-852372,852577-852740,852838-853568
          Length = 672

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 21  CGDYAKVRVKDWLALIPPTVVVGGISYYSYQ--TIKKAREAGSGQINPCIRKDINKVVDF 78
           CG  A   + DW   +P       +  +  +   I+  R  G+G IN C+   I+++ + 
Sbjct: 190 CGYLAMTLLGDWSTTVPRNASYEDVKKFMREGFAIRFPRIYGAGSINECLMDSISELRNG 249

Query: 79  IDIEDITEKA 88
           I+    T  A
Sbjct: 250 IEPRSSTGTA 259


>06_01_0052 +
           453923-454179,454265-454494,454952-455062,455200-455352,
           455440-455974,456334-456733
          Length = 561

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 1   MAYSIRPLPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVG--GISYYSYQTIKKARE 58
           M +  +PL   S+A +G       A    K W +LI P ++VG  GIS  ++  I     
Sbjct: 375 MGFERKPLLIASNANVGGPTTAA-AMATAKGWSSLIVPGILVGMFGISIATFVGIGGTEG 433

Query: 59  AGSG 62
            G G
Sbjct: 434 TGGG 437


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,244,234
Number of Sequences: 37544
Number of extensions: 162738
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 14,793,348
effective HSP length: 74
effective length of query: 54
effective length of database: 12,015,092
effective search space: 648814968
effective search space used: 648814968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)