Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
(128 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059168-1|AAH59168.1| 108|Homo sapiens zinc finger, CDGSH-type... 97 1e-20
BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type... 97 1e-20
BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type... 97 1e-20
BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type... 97 1e-20
AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type ... 97 1e-20
AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized hematop... 97 1e-20
BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein pr... 93 2e-19
BC032300-1|AAH32300.1| 135|Homo sapiens zinc finger, CDGSH-type... 93 2e-19
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr... 31 1.1
BC108289-1|AAI08290.1| 423|Homo sapiens PCLO protein protein. 28 7.9
AB011131-1|BAA25485.1| 1212|Homo sapiens KIAA0559 protein protein. 28 7.9
>BC059168-1|AAH59168.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type
domain 1 protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized
hematopoietic stem/progenitor cells protein MDS029
protein.
Length = 108
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 25 AKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDI 84
+ VRV +W+A + I Y +Y+ IN I+KD K+V D+ED+
Sbjct: 7 SSVRV-EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDL 65
Query: 85 TEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
+KA CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 66 GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein
protein.
Length = 150
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 24 YAKVRVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGSGQINPCIRKDINKVVDFIDIE 82
+A++ V +WL L+P V+ + Y + + + K ++ IN I+K+ KVV+ I+IE
Sbjct: 45 FARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKDSLINLKIQKENPKVVNEINIE 104
Query: 83 DIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
D+ KA+ CRCWRSK +P CDGSH HN+ TGDN GP++++ K
Sbjct: 105 DLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 148
>BC032300-1|AAH32300.1| 135|Homo sapiens zinc finger, CDGSH-type
domain 2 protein.
Length = 135
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 24 YAKVRVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGSGQINPCIRKDINKVVDFIDIE 82
+A++ V +WL L+P V+ + Y + + + K ++ IN I+K+ KVV+ I+IE
Sbjct: 30 FARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKDSLINLKIQKENPKVVNEINIE 89
Query: 83 DIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 125
D+ KA+ CRCWRSK +P CDGSH HN+ TGDN GP++++ K
Sbjct: 90 DLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 133
>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
2 protein.
Length = 1722
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 66 PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 104
PC K + V +I++I+ K+ LC C+ K +W CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662
>BC108289-1|AAI08290.1| 423|Homo sapiens PCLO protein protein.
Length = 423
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 2 AYSIRPLPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGS 61
AY + LP S+ Q GK M G ++V +W IP ++ +Y+ ++ S
Sbjct: 29 AYIAKILPGGSAEQTGKLMEG----MQVLEWNG-IP-------LTSKTYEEVQSIISQQS 76
Query: 62 GQINPCIRKDINKVVD 77
G+ C+R D+N + D
Sbjct: 77 GEAEICVRLDLNMLSD 92
>AB011131-1|BAA25485.1| 1212|Homo sapiens KIAA0559 protein protein.
Length = 1212
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 2 AYSIRPLPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGS 61
AY + LP S+ Q GK M G ++V +W IP ++ +Y+ ++ S
Sbjct: 809 AYIAKILPGGSAEQTGKLMEG----MQVLEWNG-IP-------LTSKTYEEVQSIISQQS 856
Query: 62 GQINPCIRKDINKVVD 77
G+ C+R D+N + D
Sbjct: 857 GEAEICVRLDLNMLSD 872
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,143
Number of Sequences: 224733
Number of extensions: 737185
Number of successful extensions: 1183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 73,234,838
effective HSP length: 82
effective length of query: 46
effective length of database: 54,806,732
effective search space: 2521109672
effective search space used: 2521109672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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