GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
         (128 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p pro...   142   1e-34
AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p pro...   142   1e-34
AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA...   142   1e-34
X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM pro...    33   0.15 
BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p pro...    33   0.15 
AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM p...    33   0.15 
AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,...    33   0.15 
AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,...    33   0.15 
L35601-1|AAC37208.1| 1549|Drosophila melanogaster ankyrin protein.     28   3.3  
AY071376-1|AAL48998.1|  136|Drosophila melanogaster RE40412p pro...    28   3.3  
AE014135-20|AAN06551.1| 1549|Drosophila melanogaster CG1651-PD, ...    28   3.3  
AE014135-19|AAG22123.1| 1549|Drosophila melanogaster CG1651-PC, ...    28   3.3  
AE014135-18|AAF59369.2| 1549|Drosophila melanogaster CG1651-PB, ...    28   3.3  
AE014135-17|AAN06550.1| 1549|Drosophila melanogaster CG1651-PA, ...    28   3.3  
AE013599-224|AAM70829.2|  136|Drosophila melanogaster CG3420-PA ...    28   3.3  
BT025097-1|ABE73268.1|  351|Drosophila melanogaster IP12356p pro...    27   5.8  
AE014296-388|AAF47591.1|  513|Drosophila melanogaster CG1887-PA ...    27   5.8  

>AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p
           protein.
          Length = 133

 Score =  142 bits (344), Expect = 1e-34
 Identities = 66/121 (54%), Positives = 82/121 (67%), Gaps = 5/121 (4%)

Query: 8   LPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SG 62
           LP+  S+       G + K+  KDWLALIPPTVVV G+ Y +Y     A  A      SG
Sbjct: 12  LPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSG 71

Query: 63  QINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVV 122
           + N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V+
Sbjct: 72  RCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVI 131

Query: 123 R 123
           +
Sbjct: 132 K 132


>AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p
           protein.
          Length = 133

 Score =  142 bits (344), Expect = 1e-34
 Identities = 66/121 (54%), Positives = 82/121 (67%), Gaps = 5/121 (4%)

Query: 8   LPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SG 62
           LP+  S+       G + K+  KDWLALIPPTVVV G+ Y +Y     A  A      SG
Sbjct: 12  LPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSG 71

Query: 63  QINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVV 122
           + N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V+
Sbjct: 72  RCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVI 131

Query: 123 R 123
           +
Sbjct: 132 K 132


>AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA
           protein.
          Length = 133

 Score =  142 bits (344), Expect = 1e-34
 Identities = 66/121 (54%), Positives = 82/121 (67%), Gaps = 5/121 (4%)

Query: 8   LPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SG 62
           LP+  S+       G + K+  KDWLALIPPTVVV G+ Y +Y     A  A      SG
Sbjct: 12  LPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSG 71

Query: 63  QINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVV 122
           + N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V+
Sbjct: 72  RCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVI 131

Query: 123 R 123
           +
Sbjct: 132 K 132


>X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM
           protein protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 43  GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 102
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 103 DGSHG 107
            G HG
Sbjct: 280 -GPHG 283


>BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p
           protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 43  GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 102
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 103 DGSHG 107
            G HG
Sbjct: 280 -GPHG 283


>AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM
           protein at 84B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 43  GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 102
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 103 DGSHG 107
            G HG
Sbjct: 280 -GPHG 283


>AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,
           isoform B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 43  GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 102
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 103 DGSHG 107
            G HG
Sbjct: 280 -GPHG 283


>AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,
           isoform A protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 43  GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 102
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 103 DGSHG 107
            G HG
Sbjct: 280 -GPHG 283


>L35601-1|AAC37208.1| 1549|Drosophila melanogaster ankyrin
          protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27 VRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITE 86
          VRV++ +     T  + G++  +   I K  +A    +      DI KV+DF+D  +I++
Sbjct: 6  VRVENKIQTRSETCAINGMALDNKNGIIKQNDATISFLRAARSGDIKKVMDFLDCGEISD 65


>AY071376-1|AAL48998.1|  136|Drosophila melanogaster RE40412p
           protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 89  SLCRCWRSKNWPYCDGSH 106
           S C C +SK+ P CDG H
Sbjct: 69  SWCLCGKSKSQPLCDGMH 86



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 90  LCRCWRSKNWPYCDGSH-GPH 109
           LC C ++ + P+CDG+H  PH
Sbjct: 110 LCNCKQTTHRPFCDGTHKQPH 130


>AE014135-20|AAN06551.1| 1549|Drosophila melanogaster CG1651-PD,
          isoform D protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27 VRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITE 86
          VRV++ +     T  + G++  +   I K  +A    +      DI KV+DF+D  +I++
Sbjct: 6  VRVENKIQTRSETCAINGMALDNKNGIIKQNDATISFLRAARSGDIKKVMDFLDCGEISD 65


>AE014135-19|AAG22123.1| 1549|Drosophila melanogaster CG1651-PC,
          isoform C protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27 VRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITE 86
          VRV++ +     T  + G++  +   I K  +A    +      DI KV+DF+D  +I++
Sbjct: 6  VRVENKIQTRSETCAINGMALDNKNGIIKQNDATISFLRAARSGDIKKVMDFLDCGEISD 65


>AE014135-18|AAF59369.2| 1549|Drosophila melanogaster CG1651-PB,
          isoform B protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27 VRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITE 86
          VRV++ +     T  + G++  +   I K  +A    +      DI KV+DF+D  +I++
Sbjct: 6  VRVENKIQTRSETCAINGMALDNKNGIIKQNDATISFLRAARSGDIKKVMDFLDCGEISD 65


>AE014135-17|AAN06550.1| 1549|Drosophila melanogaster CG1651-PA,
          isoform A protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27 VRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITE 86
          VRV++ +     T  + G++  +   I K  +A    +      DI KV+DF+D  +I++
Sbjct: 6  VRVENKIQTRSETCAINGMALDNKNGIIKQNDATISFLRAARSGDIKKVMDFLDCGEISD 65


>AE013599-224|AAM70829.2|  136|Drosophila melanogaster CG3420-PA
           protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 89  SLCRCWRSKNWPYCDGSH 106
           S C C +SK+ P CDG H
Sbjct: 69  SWCLCGKSKSQPLCDGMH 86



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 90  LCRCWRSKNWPYCDGSH-GPH 109
           LC C ++ + P+CDG+H  PH
Sbjct: 110 LCNCKQTTHRPFCDGTHKQPH 130


>BT025097-1|ABE73268.1|  351|Drosophila melanogaster IP12356p
           protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 57  REAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNK 111
           RE    ++     KD+ +++    +E + +       +R  N  Y D +H P NK
Sbjct: 67  RELTKSEVVHIYDKDLCRIIPLKYVESLEKDGIAADLFRLPNNSYGDSAHNPENK 121


>AE014296-388|AAF47591.1|  513|Drosophila melanogaster CG1887-PA
           protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 57  REAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNK 111
           RE    ++     KD+ +++    +E + +       +R  N  Y D +H P NK
Sbjct: 229 RELTKSEVVHIYDKDLCRIIPLKYVESLEKDGIAADLFRLPNNSYGDSAHNPENK 283


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,891,409
Number of Sequences: 52641
Number of extensions: 259597
Number of successful extensions: 588
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 19
length of query: 128
length of database: 24,830,863
effective HSP length: 77
effective length of query: 51
effective length of database: 20,777,506
effective search space: 1059652806
effective search space used: 1059652806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)