Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
(128 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-12|CAI46628.1| 103|Caenorhabditis elegans Hypothetical p... 101 1e-22
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 101 1e-22
Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical pr... 34 0.027
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 27 4.1
Z81491-5|CAB04021.1| 225|Caenorhabditis elegans Hypothetical pr... 27 5.4
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 26 7.1
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 26 7.1
U58756-5|AAY44006.1| 288|Caenorhabditis elegans Hypothetical pr... 26 9.4
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 26 9.4
>Z66521-12|CAI46628.1| 103|Caenorhabditis elegans Hypothetical
protein W02B12.15 protein.
Length = 103
Score = 101 bits (243), Expect = 1e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 61 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 120
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 37 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 96
Query: 121 VVR 123
+V+
Sbjct: 97 IVK 99
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 101 bits (243), Expect = 1e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 61 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 120
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 68 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127
Query: 121 VVR 123
+V+
Sbjct: 128 IVK 130
>Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical
protein M88.7 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.027
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 74 KVVDFIDIEDITEKASLCRCWRSKNWPYCDGSH 106
K V FI +D+T LC C ++ N P+CDGSH
Sbjct: 116 KPVRFIPDKDMT--VWLCNCKQTNNRPFCDGSH 146
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 70 KDINKVVDFIDIEDITEKASLCRCWRSKNW 99
+D+ KV+D + E+ TE ++L W KNW
Sbjct: 928 EDVEKVMDIVLNENTTEVSNLMNDW--KNW 955
>Z81491-5|CAB04021.1| 225|Caenorhabditis elegans Hypothetical
protein D1086.5 protein.
Length = 225
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 44 GISYYSYQTIKKAREAGSGQINPCIRKDI-NKVVDFIDIEDITEKA 88
G YY +T+K+ E Q++ C++ + NK D +D I K+
Sbjct: 108 GPMYYCEKTLKEVIEKTPDQVSECVKDYLKNKNPDKVDCVSIQTKS 153
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 48 YSYQTIKKAREAGSGQINPCIRKDIN-KVVDFIDIEDITEKASLCRCW 94
Y T+ A + + IN + K++ KV F+D + + A +CR W
Sbjct: 41 YLITTLSPA-QVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 48 YSYQTIKKAREAGSGQINPCIRKDIN-KVVDFIDIEDITEKASLCRCW 94
Y T+ A + + IN + K++ KV F+D + + A +CR W
Sbjct: 41 YLITTLSPA-QVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87
>U58756-5|AAY44006.1| 288|Caenorhabditis elegans Hypothetical
protein F58F9.8 protein.
Length = 288
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 28 RVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPC 67
+VK + P VV S +YQT+K +A +G++ PC
Sbjct: 182 QVKSKNSYYPMIVVYDDPSCTAYQTLKAFNDAANGEV-PC 220
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 25.8 bits (54), Expect = 9.4
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 3 YSIRPLPSQSSAQLGKRMCGDYAKVRVKDWLALIPPTVVVGGISYYSYQTIKKAREAGSG 62
+ I LP++SS QL + KV + +L IP + +V + Y+ + IKK G
Sbjct: 126 FLIMKLPNKSS-QLS------HFKVGLFIFLIFIPISFLVSALFYFGKELIKKQLSFQPG 178
Query: 63 QINPCIRKDINKVVDFIDIED 83
+ CI N D DI D
Sbjct: 179 --DKCIDLPANYSEDAYDIND 197
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,479
Number of Sequences: 27539
Number of extensions: 129249
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 12,573,161
effective HSP length: 74
effective length of query: 54
effective length of database: 10,535,275
effective search space: 568904850
effective search space used: 568904850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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