GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002423-TA|BGIBMGA002423-PA|IPR006622|Zinc finger,
CDGSH-type
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   10.0 

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 68  IRKDINKVVDFIDIEDITEKASL 90
           I+K+I  ++  +D+E+I  +A +
Sbjct: 569 IKKEIYDILPEVDVEEILGEAKV 591


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 64  INPCIRKDINKVVDFIDIEDITEKASLC 91
           I PC+      V+ F    D  EK SLC
Sbjct: 257 IIPCVGITFLTVLVFYLPSDSGEKVSLC 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,346
Number of Sequences: 429
Number of extensions: 1586
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)