GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002422-TA|BGIBMGA002422-PA|undefined
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   0.80 
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    27   1.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   3.2  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   3.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   5.6  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.4  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.4  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 148 LQDLDNGYSYVFEVSRNATKIH----DCIAKLLAHPLQRPLQKNTDYSFG 193
           ++  DN YS+V    R AT ++    DC+ + LAH L    +      FG
Sbjct: 634 IRGYDNYYSFVHNRGRFATYVYFIIKDCVLRTLAHKLSLGTRMKVIKKFG 683


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 140 KCDEIYDALQDLDN--GYSYVFEV-SRNATKIHDCIAKLLAHPLQRPLQKNTDYSF 192
           K + +YDAL +LDN  G + +    S+ +T +  C+  L    ++ P +K+   SF
Sbjct: 164 KSNWLYDALVELDNNMGENLIIHTSSQKSTFLLRCVGALSTTEIEYPNEKSVLESF 219


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 107 VIPHEDPCFQYIRSQIYFYTDILLAHEDDCATHKCDEIYDALQDLDNGY 155
           VIPH++  FQ  RS+I+F +++ + + ++     C +    LQ    G+
Sbjct: 719 VIPHDNLNFQVGRSKIFFRSNV-IGNFEEAHRATCSKSTVLLQSAIRGF 766


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 54  AEEATSDTFDFEKVYELIRHHIEIPMMKPGESLLPPPYIVRLLILYGR 101
           A  +T D FD +  ++LI    E      G+S+LPP  I +L+I  G+
Sbjct: 856 AARSTIDEFDEKHGFKLILEEEE-----HGKSILPPEKIEKLIICSGQ 898


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
          Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 50 DYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGES-----LLPPPYI 92
          +Y H E A  D    +  + +IR HI  P  K  E+     LLPPP I
Sbjct: 23 NYIHIE-APFDIAAIQDGWNIIRKHIHYPKPKSIEAPMFPILLPPPNI 69


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 35  TQNFTSNVKDLISAIDYAHAEEATSDTFDFEK 66
           + N  ++VKD +SA DYA+  +  +   D E+
Sbjct: 412 SSNIPADVKDSLSADDYAYDTKRKTQIEDLEE 443


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 140 KCDEIYDALQDLDNGYSYVFEVSRNATKIHDCIAKLLAHPLQRPLQKNTDYS 191
           KCD  Y   +  ++  S  + V+  A +       LL  PL RP+ + TD S
Sbjct: 27  KCDRQYPCSRCKESEESCTYGVNEQAVQ-------LLEEPLSRPITRETDSS 71


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 146 DALQDLDNGYSYVF------EVSRNATKIHDCIAKLLAHPLQRP---LQKNTDYSFGS 194
           D L+D+DN YS VF      E + N     + + +++   L RP   L+K  D  F S
Sbjct: 587 DVLEDIDNCYSKVFNKKSKRESTSNEPTAMEILTEVMLSLLSRPSLLLRKLVDMLFTS 644


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,741
Number of Sequences: 5004
Number of extensions: 42945
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 2,362,478
effective HSP length: 69
effective length of query: 127
effective length of database: 2,017,202
effective search space: 256184654
effective search space used: 256184654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)