Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002422-TA|BGIBMGA002422-PA|undefined
(196 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6) 102 2e-22
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 34 0.068
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 31 0.48
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5) 29 2.6
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 29 3.4
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 29 3.4
>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
Length = 315
Score = 102 bits (244), Expect = 2e-22
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 14/199 (7%)
Query: 2 LKRILDFFFHTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDT 61
+++ F + K ++ EF +ITL D W + V LI ++ + +T T
Sbjct: 120 VRKAAKIFVNNKAMLNSIHEFGVITLADDATWWPK-----VGQLIGQMN--NIPTSTQRT 172
Query: 62 FDFEKVYELIRHHIE-IPMMKPGESLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRS 120
E + + I + + + LPPPY++R++++YGRS+C P D Q +R
Sbjct: 173 RRIETKNSFVEQRCQRIALPEVEDPALPPPYVIRVIMIYGRSHCPPHFT--DRSRQMLRE 230
Query: 121 QI---YFYTDILLAHEDDCATHKCDEIYDALQDLDNGYS-YVFEVSRNATKIHDCIAKLL 176
+ YF+ D+L HE ++C+ IYD+ +LD Y+ EVSR+ +++ D +A LL
Sbjct: 231 LLQSPYFFFDVLYVHELPSENNQCEAIYDSFCELDEDEDGYMLEVSRSTSRLFDHMAILL 290
Query: 177 AHPLQRPLQKNTDYSFGSR 195
AHPLQRP Q++T Y +R
Sbjct: 291 AHPLQRPKQRDTFYELQNR 309
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 34.3 bits (75), Expect = 0.068
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 17 SKKTEFALITLQDAGACWTQNFTSNVKDL--ISAIDYAHAEEATSDTFDFEKVYELIRHH 74
+K +F L LQ+ G C+ N N K S A + K +
Sbjct: 228 AKDKKFILFALQNGGQCFGGNSKENYKKYGPSSTCKEIQAPSTLFISMSLIKCLSTVTEV 287
Query: 75 IEIPMMKPGESLLPPPYIVRLLILYGRSNCVPVIPHED 112
+ + ++ G S+ PY + +L R + V+ HED
Sbjct: 288 VPLAKVQSGSSITSSPYTAQCSVLRRRDILLSVLIHED 325
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 137 ATHKCDEIYDALQDLDNGYSYVFEVSRNATKIHDCIAK 174
AT K + YD L+DLD+G S VF + + + K HD + +
Sbjct: 954 ATDKSKDKYDFLRDLDSGLS-VFSLPQASQKSHDSMGE 990
>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 11 HTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYEL 70
H K A+ KK + G+ T S +SA D + A + FDF K ++L
Sbjct: 442 HLKPAVLKKVDVNQFGTVP-GSNTTHTLISMHHSWLSATD-GNGATARTILFDFRKAFDL 499
Query: 71 IRHHI 75
I HHI
Sbjct: 500 IDHHI 504
>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
Length = 279
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 11 HTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYEL 70
H K A+ KK + G+ T S +SA D + A + FDF K ++L
Sbjct: 149 HLKPAVLKKVDVNQFGTVP-GSNTTHALISMHHSWLSATD-GNGATARTILFDFRKAFDL 206
Query: 71 IRHHI 75
I HHI
Sbjct: 207 IDHHI 211
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 11 HTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYEL 70
H K A+ KK + G+ T S +SA D + A + FDF K ++L
Sbjct: 722 HLKPAVLKKVDVNQFGTVP-GSNTTHALISMHHSCLSATD-GNGAIARTILFDFRKAFDL 779
Query: 71 IRHHI 75
I HHI
Sbjct: 780 IDHHI 784
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 11 HTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYEL 70
H K A+ KK + G+ T S +S D + A + FDF K ++L
Sbjct: 388 HLKPAVLKKVDVNRFRTVP-GSNTTHTLISMHHSWLSVTD-GNGATARTILFDFRKAFDL 445
Query: 71 IRHHI 75
I HHI
Sbjct: 446 IDHHI 450
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 11 HTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYEL 70
H K A+ KK + G+ T S +SA D + A + FDF K ++L
Sbjct: 433 HLKPAVLKKVDVNQFGTVP-GSNTTHALISMHHSCLSATD-GNGAIARTILFDFRKAFDL 490
Query: 71 IRHHI 75
I HHI
Sbjct: 491 IDHHI 495
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.139 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,030,525
Number of Sequences: 59808
Number of extensions: 290083
Number of successful extensions: 882
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 16,821,457
effective HSP length: 78
effective length of query: 118
effective length of database: 12,156,433
effective search space: 1434459094
effective search space used: 1434459094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)
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