GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002422-TA|BGIBMGA002422-PA|undefined
         (196 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81096-8|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z81096-8|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 3   KRILDFFFHTKHAISKKTEFALITLQ-DAGACWTQNFTSNVKDLI 46
           K++ DF  HTK  +S +   A+  L  D GA W   F ++    +
Sbjct: 207 KQLKDFVTHTKKIVSFEWPMAVANLMLDEGASWIPLFVTSTSHTV 251


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 3   KRILDFFFHTKHAISKKTEFALITLQ-DAGACWTQNFTSNVKDLI 46
           K++ DF  HTK  +S +   A+  L  D GA W   F ++    +
Sbjct: 207 KQLKDFVTHTKKIVSFEWPMAVANLMLDEGASWIPLFVTSTSHTV 251


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
            protein R155.2 protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 47   SAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGESLLPPPYIVRLLIL 98
            S I Y    E TS  F    V + IR H  + +  PGE       IVRLL +
Sbjct: 1175 SIIGYQKIAE-TSGAFVLTDVIDYIREHRALAISTPGELSYIDAVIVRLLAI 1225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,280,494
Number of Sequences: 27539
Number of extensions: 226209
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 12,573,161
effective HSP length: 78
effective length of query: 118
effective length of database: 10,425,119
effective search space: 1230164042
effective search space used: 1230164042
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)