GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002421-TA|BGIBMGA002421-PA|undefined
         (88 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q28MU5 Cluster: Extracellular solute-binding protein fa...    31   3.4  
UniRef50_A0UU45 Cluster: ParB domain protein nuclease precursor;...    31   3.4  
UniRef50_A0C4H2 Cluster: Chromosome undetermined scaffold_149, w...    31   4.5  
UniRef50_Q08PA4 Cluster: Putative uncharacterized protein; n=7; ...    31   6.0  
UniRef50_UPI00006CBEFD Cluster: cyclic nucleotide-binding domain...    30   7.9  
UniRef50_A7NEP0 Cluster: Glutamate decarboxylase; n=2; Francisel...    30   7.9  

>UniRef50_Q28MU5 Cluster: Extracellular solute-binding protein
           family 5; n=10; Proteobacteria|Rep: Extracellular
           solute-binding protein family 5 - Jannaschia sp. (strain
           CCS1)
          Length = 539

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 21  LGKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGVKKDNDAN 72
           LG ++ + +  W++      N+  +L  A WC    + S FL  +  +ND N
Sbjct: 410 LGVEISLSNYEWQSYLDVRGNQNFDLGRAAWCGDYNEASTFLDLLTSNNDNN 461


>UniRef50_A0UU45 Cluster: ParB domain protein nuclease precursor;
           n=1; Burkholderia multivorans ATCC 17616|Rep: ParB
           domain protein nuclease precursor - Burkholderia
           multivorans ATCC 17616
          Length = 452

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 41  NETEELQTAVWCSGAMDLSIFLFGVKKDNDANILAAREKHSYLATNV 87
           N+  E+Q  ++ +G  DL+I ++ V ++ D   L+ RE    LAT+V
Sbjct: 100 NDWPEIQAKIFPAGTSDLAIRMYQVSENIDRKQLSVRETAIGLATDV 146


>UniRef50_A0C4H2 Cluster: Chromosome undetermined scaffold_149,
          whole genome shotgun sequence; n=1; Paramecium
          tetraurelia|Rep: Chromosome undetermined scaffold_149,
          whole genome shotgun sequence - Paramecium tetraurelia
          Length = 696

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 40 PNETEELQTAVWCSGAMDLSIFLFGVKKDNDANILAAREKHSYLATN 86
          PN+    Q  ++ S AM  SIF+F   +D     + +  KH+ L  N
Sbjct: 16 PNQDNPTQITIFQSSAMQTSIFIFRFGQDTKETSIISVTKHTPLTPN 62


>UniRef50_Q08PA4 Cluster: Putative uncharacterized protein; n=7;
           Cystobacterineae|Rep: Putative uncharacterized protein -
           Stigmatella aurantiaca DW4/3-1
          Length = 291

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 18  KGRLGKDLKIPSKNWRAAAYTNPNETEELQTAVWC 52
           +G  G+ LK+P+  +  A     N+ E  + A+WC
Sbjct: 255 RGESGRTLKLPNIRFPKAMMEGGNDIESAEAAIWC 289


>UniRef50_UPI00006CBEFD Cluster: cyclic nucleotide-binding domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: cyclic nucleotide-binding domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1310

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 16  VNKG-RLGKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGVKKDNDANIL 74
           +NK  +L  D+K P KN R  + +NP++ +E Q+    +  +D++       + ND  + 
Sbjct: 102 LNKASKLSFDIKPPHKNSRQTSTSNPSKNDESQSYQMNNDRLDIN---KKTSQLNDTEVN 158

Query: 75  AAREKHSYLATNV 87
               + SY   N+
Sbjct: 159 QTNREDSYTTNNM 171


>UniRef50_A7NEP0 Cluster: Glutamate decarboxylase; n=2;
          Francisella tularensis subsp. holarctica|Rep: Glutamate
          decarboxylase - Francisella tularensis subsp.
          holarctica FTA
          Length = 69

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 25 LKIPSKNWRAAAYTNPNETEEL 46
          L++ +K W+ AAYT PN  E+L
Sbjct: 4  LRVRAKGWQIAAYTMPNNREDL 25


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.314    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,852,007
Number of Sequences: 1657284
Number of extensions: 3084265
Number of successful extensions: 5885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5880
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 575,637,011
effective HSP length: 66
effective length of query: 22
effective length of database: 466,256,267
effective search space: 10257637874
effective search space used: 10257637874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)