GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002421-TA|BGIBMGA002421-PA|undefined
         (88 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             24   3.7  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    23   4.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   6.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   6.5  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    23   6.5  

>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 21  LGKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGVKKDN 69
           L  D  IP K+       NP++++ L+TA       DL I   G++ ++
Sbjct: 79  LDSDSVIPYKDALGKLTVNPDQSKHLETAT--LSLFDLDIDFVGLRAES 125


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 19  GRLGKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSI 60
           G +   + IP     AA  T P   E+L+      G  D S+
Sbjct: 205 GHIPTSINIPFTETTAAGITAPKPEEDLEKVFSSHGLTDKSV 246


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 547

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 18 KGRLGKDLKIPSKNWRAAAYTNPNETEE 45
          K  LG D  +P    R    +NPN ++E
Sbjct: 31 KRYLGNDRNLPFHREREKVESNPNSSDE 58


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 34  AAAYTNPNETEELQTAVWCS 53
           + AY NP   +E  TA W S
Sbjct: 694 STAYMNPISFDETTTAAWLS 713


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 341

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 26 KIPSKNWRAAAYTNPNETEELQTAV 50
          K+PSK+W ++  TN    E  + A+
Sbjct: 62 KLPSKSWVSSTVTNEKLRESRRLAL 86


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,166
Number of Sequences: 5004
Number of extensions: 13497
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 2,362,478
effective HSP length: 61
effective length of query: 27
effective length of database: 2,057,234
effective search space: 55545318
effective search space used: 55545318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)