Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002421-TA|BGIBMGA002421-PA|undefined
(88 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 1.1
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 26 3.2
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 26 4.3
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 25 5.7
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 25 5.7
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 25 7.5
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 25 7.5
12_02_0374 + 18248889-18249018,18249391-18249440 25 9.9
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 25 9.9
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 25 9.9
07_01_1174 + 11097044-11097070,11097950-11098096,11098381-110984... 25 9.9
01_06_1717 + 39404449-39405062,39405157-39406321 25 9.9
01_05_0310 + 20734767-20734936,20735160-20735288,20735748-207358... 25 9.9
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1 MIAYLAKEGTQSLRTVNKGRLGKDLKIPSKNWRAAAYTNPNETEELQTA-VWCSGAMD 57
M+A A + T+S + K G+ L +P+ NW EL TA + G++D
Sbjct: 626 MVARTASDITESKVVLEKRGKGQQLPLPTTNWVKERPETTEPVAELSTASISSHGSID 683
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 19 GRLGKDLKIPSKNWRAAAYTNPNETEELQ 47
G + + IPS+ R + ++ ETE+LQ
Sbjct: 594 GPISRSFSIPSRGMRTSGISDGKETEDLQ 622
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 53 SGAMDLSIFLFGVKKDNDANILAAREKHSYLATNVA 88
S + L ++FG KD +A I+AA HS + +A
Sbjct: 524 SSILRLINYIFGYWKDGEARIIAAPFCHSLIQLAIA 559
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 13 LRTVNKGRLGKDLKIPSKNWRAAAYTNPNETEELQTAVWC 52
+R V + D+ + N A+AYT+ E L+ WC
Sbjct: 275 IRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWC 314
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 37 YTNPNETEELQTAVWCSGAMDLSIFLFGVKKDNDAN 72
+ NPN T + C+ M+ S+FL G ND N
Sbjct: 179 FINPNRTIHGTRSSNCNDMMNQSLFLVGEIGGNDYN 214
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 5 LAKEGTQSLRTVNKGRLGKDLKIPSKNWRAAAYTNPNETEE 45
L++ ++ L+ KG+L KD + +W Y P TEE
Sbjct: 44 LSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEE 84
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 9 GTQSLRTVNKGRLGKDLKIPSKNWRAAAYTNPNETEELQ 47
G +S +K R+ +K+ NW AAA P ++L+
Sbjct: 209 GYRSRPEKSKKRIASFMKLLRFNWAAAAAVTPARAKDLE 247
>12_02_0374 + 18248889-18249018,18249391-18249440
Length = 59
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 21 LGKDLKIPSKNWRAAAYTNPNETEELQTAVW 51
+ + LKIPS W A ++ LQ++ W
Sbjct: 1 MSRHLKIPSLLWSAVGLAMVTISKRLQSSFW 31
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 60 IFLFGVKKDNDAN---ILAAREKHSYLATNV 87
+F FG KK ND++ IL A E + Y+ +V
Sbjct: 335 VFSFGFKKTNDSSEGPILNAMEIYKYIEISV 365
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 60 IFLFGVKKDNDAN---ILAAREKHSYLATNV 87
+F FG KK ND++ IL A E + Y+ +V
Sbjct: 338 VFSFGFKKTNDSSEGPILNAMEIYKYIEISV 368
>07_01_1174 +
11097044-11097070,11097950-11098096,11098381-11098424,
11098915-11098952,11099787-11099877,11100873-11100978,
11101062-11101132,11101221-11101290,11101547-11101609,
11101883-11102058,11102104-11102128,11102729-11102800,
11102903-11103004,11103089-11103163,11103749-11103871,
11104320-11104433,11106012-11106053,11106328-11106444,
11106983-11107039,11107424-11107441
Length = 525
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 7 KEGTQSLRTVNKGRLGKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGV 65
K+ + + V + L K +KN++A Y P E+++ + +++ +FG+
Sbjct: 105 KQFLEKVEAVRRSALEKKKADENKNYQAIDYDAPIESDKSTIGFGTRVGIGIAVMVFGL 163
>01_06_1717 + 39404449-39405062,39405157-39406321
Length = 592
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 68 DNDANILAAREKHSYLATNVA 88
D+DA AA +H +LATN +
Sbjct: 434 DDDAAAAAAASRHLFLATNAS 454
>01_05_0310 +
20734767-20734936,20735160-20735288,20735748-20735850,
20736017-20736119,20737394-20737496,20737620-20737674,
20737768-20737800,20737936-20737982,20738221-20738347
Length = 289
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 31 NWRAAAYTNPNETEELQTAVWCSGAMDLSIFL 62
NW+ PN EL AV GA+ L I++
Sbjct: 251 NWKELPAQRPNLFLELTQAVATVGAVSLGIYI 282
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,384
Number of Sequences: 37544
Number of extensions: 78850
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 14,793,348
effective HSP length: 67
effective length of query: 21
effective length of database: 12,277,900
effective search space: 257835900
effective search space used: 257835900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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