GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002421-TA|BGIBMGA002421-PA|undefined
         (88 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    21   4.9  
DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor prot...    21   6.5  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 28  PSKNWRAAAYTNPNETEELQTAVW 51
           P   W  A+Y N N      T VW
Sbjct: 96  PKLTWNPASYGNLNVVRWDPTIVW 119


>DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor
          protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 58 LSIFLFGVKKDNDANILAAREKHSYLATN 86
          L IF+ GV  +    I+ AR +  + ATN
Sbjct: 53 LLIFITGVVGNISTCIVIARNRSMHTATN 81


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,954
Number of Sequences: 2123
Number of extensions: 2890
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 516,269
effective HSP length: 54
effective length of query: 34
effective length of database: 401,627
effective search space: 13655318
effective search space used: 13655318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)