Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002421-TA|BGIBMGA002421-PA|undefined
(88 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 28 0.93
U23411-2|AAC46731.2| 471|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 26 3.7
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 26 3.7
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 26 3.7
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 26 3.7
Z68215-2|CAA92451.2| 452|Caenorhabditis elegans Hypothetical pr... 25 4.9
Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical pr... 25 6.5
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 25 8.6
Z69661-4|CAA93491.1| 238|Caenorhabditis elegans Hypothetical pr... 25 8.6
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 27.9 bits (59), Expect = 0.93
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 25 LKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGVKKDNDANILAAREKHSYLA 84
+ +PSK W+ TN +EE + C GA+ + FL + + I+ K+ L+
Sbjct: 320 MMLPSK-WQQVVDTNEVASEESELGEACFGALAAARFLVNAQMGSFDQIVILGTKYVSLS 378
Query: 85 TNVA 88
+ +A
Sbjct: 379 SGLA 382
>U23411-2|AAC46731.2| 471|Caenorhabditis elegans Hypothetical
protein T25E4.2 protein.
Length = 471
Score = 26.2 bits (55), Expect = 2.8
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 GKDLKIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSI----FLFGVK---KDNDANIL 74
G L I + + Y NP++ L + LS+ FLF + D+DAN+L
Sbjct: 229 GWTLVIQERGYTPYLYCNPSQCARLDRLKSRFRFISLSLTDCSFLFRINFIGADDDANLL 288
Query: 75 AAREKH---SYLATNVA 88
++KH S LA+++A
Sbjct: 289 LGQDKHVGFSALASDLA 305
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 40 PNETEELQTAVWCSGAMD 57
PNE++E + A++C A+D
Sbjct: 730 PNESDETRMAIFCESALD 747
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 40 PNETEELQTAVWCSGAMD 57
PNE++E + A++C A+D
Sbjct: 626 PNESDETRMAIFCESALD 643
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 40 PNETEELQTAVWCSGAMD 57
PNE++E + A++C A+D
Sbjct: 676 PNESDETRMAIFCESALD 693
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 40 PNETEELQTAVWCSGAMD 57
PNE++E + A++C A+D
Sbjct: 730 PNESDETRMAIFCESALD 747
>Z68215-2|CAA92451.2| 452|Caenorhabditis elegans Hypothetical
protein C53B4.2 protein.
Length = 452
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 37 YTNPNETEELQTAVWCSGAMDLSIFLFGVKKDNDANILAAREKHSYL 83
Y + T+E T + G +D VKKDN A I+ + + Y+
Sbjct: 211 YLSKYTTKEKLTLLTDDGTVDDIFKESKVKKDNSATIVPVEDSYDYV 257
>Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical
protein R07H5.8 protein.
Length = 342
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 46 LQTAVWCSGAMDLSIFLFGVKKDNDANILAAREKHS 81
L+ A W A + ++F V KD ++LA++ K +
Sbjct: 70 LRVAQWILNAPNRTVFFGAVGKDQYGDLLASKAKEA 105
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 56 MDLSIFLFGVKKDNDANI 73
+DLS FGVK D D N+
Sbjct: 177 LDLSPNFFGVKTDEDGNV 194
>Z69661-4|CAA93491.1| 238|Caenorhabditis elegans Hypothetical
protein F48F7.6 protein.
Length = 238
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 26 KIPSKNWRAAAYTNPNETEELQTAVWCSGAMDLSIFLFGVKKD 68
KI A N + EE + WC+G L +FL + KD
Sbjct: 74 KIIDSKGNCAFCRNKKQHEEEK---WCAGRTKLQLFLHRIDKD 113
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,377
Number of Sequences: 27539
Number of extensions: 68195
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 10
length of query: 88
length of database: 12,573,161
effective HSP length: 67
effective length of query: 21
effective length of database: 10,728,048
effective search space: 225289008
effective search space used: 225289008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -