GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002420-TA|BGIBMGA002420-PA|undefined
         (80 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   0.92 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    20   3.7  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    19   4.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    19   4.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    19   4.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   4.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    19   4.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    19   6.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    19   6.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    19   6.5  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 0.92
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 37  ERIQSIQFFLSEIPNDVETSSLRAEISVL 65
           +RI+++   LSEI  +   +  +A IS+L
Sbjct: 103 KRIRTLLIKLSEIKENTRLAEKQARISIL 131


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 36  IERIQSIQFFLSEIPNDVE 54
           +E I SI    S+IP++VE
Sbjct: 325 VEHILSIVNTCSQIPSEVE 343


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 8   DEDIEDFLNIPSGSEDGQDFSDAESDDDIERIQSIQ 43
           D D +++  +P GS D  D     +  D   +++ +
Sbjct: 132 DRDGKNYPAVPYGSGDFHDSCTVNNYQDASNVRNCE 167


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 8   DEDIEDFLNIPSGSEDGQDFSDAESDDDIERIQSIQ 43
           D D +++  +P GS D  D     +  D   +++ +
Sbjct: 133 DRDGKNYPAVPYGSGDFHDSCTVNNYQDASNVRNCE 168


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 8   DEDIEDFLNIPSGSEDGQDFSDAESDDDIERIQSIQ 43
           D D +++  +P GS D  D     +  D   +++ +
Sbjct: 133 DRDGKNYPAVPYGSGDFHDSCTVNNYQDASNVRNCE 168


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 8   DEDIEDFLNIPSGSEDGQDFSDAE-SDDDIERIQSIQFFLSEIP 50
           +ED++  +N P   ED  D      ++  I  +Q I  F   +P
Sbjct: 334 EEDVKRIINQPMDGEDQCDVRFRHITEITILTVQLIVEFAKRLP 377


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 26  DFSDAESDDDIERIQSIQFFLSEIPNDV 53
           DF    +   ++ + +    +SEIPND+
Sbjct: 288 DFDTFRNTKKLQWLDTSHNRISEIPNDL 315


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 27  FSDAESDDDIERIQSIQFFLSEIPNDV 53
           FS+ + D  I R     FF S  P+ V
Sbjct: 329 FSNLDKDAFIHRTVDDYFFCSPHPHKV 355


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 27  FSDAESDDDIERIQSIQFFLSEI 49
           FSD + DD I +I    + L  +
Sbjct: 214 FSDNKQDDKIPQISDNLYILCRL 236


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 27  FSDAESDDDIERIQSIQFFLSEI 49
           FSD + DD I +I    + L  +
Sbjct: 214 FSDNKQDDKIPQISDNLYILCRL 236


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.135    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,158
Number of Sequences: 317
Number of extensions: 499
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 114,650
effective HSP length: 46
effective length of query: 34
effective length of database: 100,068
effective search space:  3402312
effective search space used:  3402312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)