GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002420-TA|BGIBMGA002420-PA|undefined
         (80 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   0.81 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   0.81 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   3.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 0.81
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 22  EDGQDFSDAESDDDIE 37
           ED  D  D + DDD+E
Sbjct: 391 EDDDDDGDDDDDDDVE 406


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 0.81
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 11  IEDFLNIPSGSEDGQDFSDAESDDDIERIQSIQFFLSEIPNDVETS-SLRAEISVLVSRQ 69
           +E+  N  SGS + +D +  +    I   +S +FFL+ +  +     S  A+  +   RQ
Sbjct: 424 MEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQ 483

Query: 70  RG 71
            G
Sbjct: 484 NG 485


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MSRRRLRDEDIEDFLNIPSGSEDGQDFSDAESDDDIERIQSIQFFLSEIPNDVETSSL 58
           ++  RLRD  I D       S+DG D +D +       I+ +    +EI    E S L
Sbjct: 178 LTENRLRD--INDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPL 233


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 8   DEDIEDFLNIPSGSEDGQDFSDAE-SDDDIERIQSIQFFLSEIP 50
           +ED++   N PS  ED  D+     ++  I  +Q I  F   +P
Sbjct: 354 EEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 397


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 3.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 32  SDDDIERIQSIQFFLSE 48
           SD++IE++ +I +F  E
Sbjct: 367 SDEEIEKLSTIYWFTVE 383


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,738
Number of Sequences: 429
Number of extensions: 695
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 140,377
effective HSP length: 47
effective length of query: 33
effective length of database: 120,214
effective search space:  3967062
effective search space used:  3967062
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)