GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002419-TA|BGIBMGA002419-
PA|IPR001261|ArgE/dapE/ACY1/CPG2/yscS, IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR000007|Tubby, C-terminal
         (1306 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       28   0.43 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   1.00 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   1.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 597 DSNDSPSHTNNNIRRKLTLSERINNTNNLINQ-SEIY----NPNNNTSV--PSLARAESY 649
           + ND  +  N N RRK T + R +N      +  E Y     PN+  S+    +    ++
Sbjct: 117 EDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINF 176

Query: 650 DEFPYIDTTDAVNNVPESVYTAAVRGSERRINSSAAVSGRHAISPLRCESSVPTLQSPKN 709
           D++  I    + +NVP+ + +    G    +  +   SG    +P++ + ++P + + ++
Sbjct: 177 DKYDNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQ-KHALPIIMNGRD 235

Query: 710 AVA 712
            +A
Sbjct: 236 LMA 238


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP57-1
            protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 1.00
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 1171 ESSDDEYPNGYNEVNSKNYRDLESFQKAQLRNKLKRGGNPASGNNTGESRNNNARR 1226
            ++ + +  N  N+      R  ++ Q    +N  K+ GN  +GN   +++ N  R+
Sbjct: 455  QNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQ 510



 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/74 (18%), Positives = 33/74 (44%)

Query: 1171 ESSDDEYPNGYNEVNSKNYRDLESFQKAQLRNKLKRGGNPASGNNTGESRNNNARRQLIM 1230
            ++ + +  N  N+      R  ++ Q    +N  K+  N  +GN   +++ N  R+    
Sbjct: 465  QNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQ 524

Query: 1231 HNKAPMWNENSQVY 1244
            +N+      ++QV+
Sbjct: 525  NNQNDNNRNDNQVH 538



 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 1170 SESSDDEYPNGYNEVNSKNYRDLESFQKAQLRNKLKRGGNPASGNNTGESRNNNARR 1226
            ++++D++  N  N     + R  ++ Q    +N  K+ GN  + N    +R N  ++
Sbjct: 444  NQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQ 500



 Score = 25.0 bits (52), Expect = 4.0
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 1170 SESSDDEYPNGYNEVNSKNYRDLESFQKAQLRNKLKRGGNPASGNNTGESRNNNARRQLI 1229
            ++++D++  N  N  N    +   + Q    +N  K+ GN  + N    +R N+ ++   
Sbjct: 434  NQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493

Query: 1230 MHNKAPMWNENSQ 1242
              N     N+N Q
Sbjct: 494  RQN-GNKQNDNKQ 505


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 786 NCLSKLRKNICGRNETSDMNT--------RILKSLCNRTHEHDVHPDVVSR 828
           NCL KL+  +    ETS   T        R +KSL  R  +H VH + +SR
Sbjct: 66  NCLEKLKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQLSR 116


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,241
Number of Sequences: 429
Number of extensions: 15448
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 6
length of query: 1306
length of database: 140,377
effective HSP length: 66
effective length of query: 1240
effective length of database: 112,063
effective search space: 138958120
effective search space used: 138958120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)