Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002418-TA|BGIBMGA002418-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR001098|DNA-directed DNA polymerase, IPR014001|DEAD-like helicases,
N-terminal, IPR010995|Rad51, N-terminal, IPR002298|DNA polymerase A,
IPR011545|DEAD/DEAH box helicase, N-terminal
(1486 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB7978 Cluster: PREDICTED: similar to mutagen-se... 847 0.0
UniRef50_UPI0000D572BA Cluster: PREDICTED: similar to CG6019-PA;... 844 0.0
UniRef50_UPI00015B5D9F Cluster: PREDICTED: similar to Mus308; n=... 818 0.0
UniRef50_O18475 Cluster: CG6019-PA; n=3; Sophophora|Rep: CG6019-... 780 0.0
UniRef50_Q178I3 Cluster: DNA polymerase theta; n=3; Culicidae|Re... 747 0.0
UniRef50_Q4RK95 Cluster: Chromosome 18 SCAF15030, whole genome s... 706 0.0
UniRef50_Q6ZM94 Cluster: Novel protein similar to humna DNA-dire... 698 0.0
UniRef50_Q7TQC0 Cluster: DNA polymerase Q; n=17; Tetrapoda|Rep: ... 694 0.0
UniRef50_Q588V7 Cluster: Helicase and polymerase containing prot... 512 e-143
UniRef50_Q2QTK2 Cluster: DNA polymerase I family protein, expres... 506 e-141
UniRef50_Q2UKG1 Cluster: DNA polymerase theta/eta; n=8; Eurotiom... 422 e-116
UniRef50_Q54X98 Cluster: Putative uncharacterized protein; n=1; ... 405 e-111
UniRef50_Q8TDG4 Cluster: DNA helicase HEL308; n=40; Euteleostomi... 376 e-102
UniRef50_UPI0000499780 Cluster: hypothetical protein 150.t00024;... 365 5e-99
UniRef50_A7RUT3 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 364 9e-99
UniRef50_A4S324 Cluster: Predicted protein; n=1; Ostreococcus lu... 359 4e-97
UniRef50_Q1LVP8 Cluster: Novel protein similar to vertebrate DNA... 355 4e-96
UniRef50_Q9N389 Cluster: Putative uncharacterized protein; n=4; ... 330 2e-88
UniRef50_A6R1R5 Cluster: Putative uncharacterized protein; n=1; ... 327 2e-87
UniRef50_UPI000023E817 Cluster: hypothetical protein FG06834.1; ... 317 1e-84
UniRef50_UPI0000D55858 Cluster: PREDICTED: similar to CG7972-PA;... 291 1e-76
UniRef50_Q16PG6 Cluster: DNA polymerase theta; n=1; Aedes aegypt... 279 3e-73
UniRef50_Q5TN58 Cluster: ENSANGP00000029591; n=1; Anopheles gamb... 277 2e-72
UniRef50_Q9VSE2 Cluster: CG7972-PA; n=2; Sophophora|Rep: CG7972-... 275 7e-72
UniRef50_Q57YX8 Cluster: DNA polymerase theta (Helicase domain o... 274 9e-72
UniRef50_A6SHS0 Cluster: Putative uncharacterized protein; n=1; ... 264 2e-68
UniRef50_Q7S0U4 Cluster: Putative uncharacterized protein NCU074... 249 5e-64
UniRef50_A2DLF9 Cluster: DEAD/DEAH box helicase family protein; ... 232 5e-59
UniRef50_A5X572 Cluster: DNA polymerase nu; n=2; Clupeocephala|R... 225 7e-57
UniRef50_A2D9Y6 Cluster: Type III restriction enzyme, res subuni... 224 1e-56
UniRef50_Q6X9R1 Cluster: DNA polymerase I; n=1; Dictyoglomus the... 223 2e-56
UniRef50_A3DL12 Cluster: DEAD/DEAH box helicase domain protein; ... 223 2e-56
UniRef50_Q2RHE8 Cluster: DNA polymerase I; n=3; Clostridia|Rep: ... 218 1e-54
UniRef50_A0FLQ6 Cluster: Putative uncharacterized protein; n=3; ... 218 1e-54
UniRef50_A1VG95 Cluster: DNA polymerase I; n=2; Desulfovibrio vu... 217 1e-54
UniRef50_UPI00015BB23F Cluster: DEAD/DEAH box helicase domain pr... 217 2e-54
UniRef50_Q8TL39 Cluster: Putative ski2-type helicase; n=4; Eurya... 215 8e-54
UniRef50_A5CXW1 Cluster: DNA polymerase I; n=2; sulfur-oxidizing... 215 1e-53
UniRef50_Q8GDN6 Cluster: DNA polymerase I; n=1; Heliobacillus mo... 214 1e-53
UniRef50_Q6X9R3 Cluster: DNA polymerase I; n=2; Clostridium|Rep:... 214 1e-53
UniRef50_P43741 Cluster: DNA polymerase I; n=140; Bacteria|Rep: ... 214 1e-53
UniRef50_Q6F883 Cluster: DNA polymerase I, 3'--> 5' polymerase, ... 214 2e-53
UniRef50_A0LIP7 Cluster: DNA polymerase I; n=1; Syntrophobacter ... 214 2e-53
UniRef50_Q6HSF9 Cluster: DNA polymerase I; n=28; Bacillales|Rep:... 213 4e-53
UniRef50_Q7MTY3 Cluster: DNA polymerase type I; n=2; Porphyromon... 212 5e-53
UniRef50_Q1FMB9 Cluster: DNA polymerase I; n=1; Clostridium phyt... 212 5e-53
UniRef50_Q8RBE6 Cluster: DNA polymerase I-3'-5' exonuclease and ... 212 7e-53
UniRef50_Q73M72 Cluster: DNA polymerase I; n=1; Treponema dentic... 212 7e-53
UniRef50_Q2LQV1 Cluster: DNA polymerase I; n=1; Syntrophus acidi... 212 7e-53
UniRef50_Q30VQ3 Cluster: DNA polymerase I; n=2; Desulfovibrionac... 211 9e-53
UniRef50_A0B7B5 Cluster: DEAD/DEAH box helicase domain protein; ... 211 9e-53
UniRef50_Q892J4 Cluster: DNA polymerase I; n=14; Clostridia|Rep:... 211 1e-52
UniRef50_Q83AT5 Cluster: DNA polymerase I; n=4; Coxiella burneti... 210 2e-52
UniRef50_A2DKN3 Cluster: DEAD/DEAH box helicase family protein; ... 210 2e-52
UniRef50_Q7VRJ4 Cluster: DNA polymerase I; n=3; Enterobacteriace... 209 5e-52
UniRef50_Q3ZYR5 Cluster: DNA-directed DNA polymerase I; n=3; Deh... 208 9e-52
UniRef50_Q41E45 Cluster: DNA polymerase A; n=1; Exiguobacterium ... 208 9e-52
UniRef50_Q9F191 Cluster: DNA polymerase I; n=1; Brachyspira hyod... 208 1e-51
UniRef50_Q6X9Q9 Cluster: DNA polymerase I; n=1; Spirochaeta ther... 208 1e-51
UniRef50_Q2ACZ4 Cluster: DNA polymerase A; n=1; Halothermothrix ... 207 2e-51
UniRef50_Q1PUU8 Cluster: Stongly similair to DNA polymerase I; n... 207 2e-51
UniRef50_Q9X1V4 Cluster: DNA-directed DNA polymerase I; n=4; The... 206 3e-51
UniRef50_A6DEW9 Cluster: DNA polymerase I; n=1; Caminibacter med... 206 3e-51
UniRef50_A5CDT3 Cluster: DNA polymerase I; n=1; Orientia tsutsug... 206 3e-51
UniRef50_Q010Y2 Cluster: Helicase and polymerase containing prot... 206 3e-51
UniRef50_P74933 Cluster: DNA polymerase I; n=1; Treponema pallid... 206 3e-51
UniRef50_A6TSU6 Cluster: DNA polymerase I; n=5; Clostridiaceae|R... 206 4e-51
UniRef50_A7DR62 Cluster: DEAD/DEAH box helicase domain protein p... 206 4e-51
UniRef50_P30313 Cluster: DNA polymerase I, thermostable; n=8; Th... 206 5e-51
UniRef50_Q9RHA4 Cluster: DNA polymerase I; n=2; Thermomicrobium ... 205 6e-51
UniRef50_A5Z4J5 Cluster: Putative uncharacterized protein; n=2; ... 205 8e-51
UniRef50_Q0AVE2 Cluster: DNA polymerase I; n=1; Syntrophomonas w... 204 1e-50
UniRef50_Q6MPP6 Cluster: DNA polymerase I; n=1; Bdellovibrio bac... 204 2e-50
UniRef50_A4GJ55 Cluster: Putative DNA polymerase I; n=1; uncultu... 203 2e-50
UniRef50_A3H7W4 Cluster: DEAD/DEAH box helicase-like; n=1; Caldi... 203 2e-50
UniRef50_Q67R60 Cluster: DNA polymerase I; n=2; Firmicutes|Rep: ... 202 8e-50
UniRef50_Q6X9S0 Cluster: DNA polymerase I; n=1; Caldibacillus ce... 201 1e-49
UniRef50_Q1NVM3 Cluster: DNA polymerase A; n=3; Deltaproteobacte... 201 1e-49
UniRef50_Q0F0N6 Cluster: DNA polymerase I; n=1; Mariprofundus fe... 201 1e-49
UniRef50_Q9HT80 Cluster: DNA polymerase I; n=76; Proteobacteria|... 200 2e-49
UniRef50_Q59156 Cluster: DNA polymerase I; n=6; Clostridiales|Re... 200 2e-49
UniRef50_A7SCG9 Cluster: Predicted protein; n=1; Nematostella ve... 200 3e-49
UniRef50_Q3ABL3 Cluster: DNA polymerase I; n=1; Carboxydothermus... 199 4e-49
UniRef50_Q12WZ6 Cluster: DEAD/DEAH box helicase-like protein; n=... 199 4e-49
UniRef50_A0JWM3 Cluster: DNA polymerase I; n=3; Micrococcineae|R... 198 7e-49
UniRef50_A4FZE4 Cluster: DEAD/DEAH box helicase domain protein; ... 198 7e-49
UniRef50_Q7TQ07 Cluster: DNA polymerase nu; n=8; Amniota|Rep: DN... 198 1e-48
UniRef50_Q5HCC8 Cluster: DNA polymerase I; n=12; Rickettsiales|R... 197 2e-48
UniRef50_UPI00015386DF Cluster: afuHEL308 HELICASE; n=2; Archaeo... 197 2e-48
UniRef50_A0LCQ8 Cluster: DNA polymerase I; n=1; Magnetococcus sp... 197 2e-48
UniRef50_Q5CT71 Cluster: DEXDc+HELICc, mus308/POLQ like SFII DNA... 197 2e-48
UniRef50_Q8A2P5 Cluster: DNA polymerase I; n=25; Bacteroidetes/C... 196 3e-48
UniRef50_Q5FIV7 Cluster: DNA polymerase I; n=22; Lactobacillales... 196 4e-48
UniRef50_Q7QVS5 Cluster: GLP_302_20634_23333; n=1; Giardia lambl... 195 7e-48
UniRef50_Q7Z5Q5 Cluster: DNA polymerase nu; n=21; Tetrapoda|Rep:... 195 7e-48
UniRef50_Q9S1G2 Cluster: DNA polymerase I; n=23; Bacteria|Rep: D... 195 7e-48
UniRef50_Q8YEQ3 Cluster: DNA POLYMERASE I; n=14; Bacteria|Rep: D... 195 9e-48
UniRef50_A7HD60 Cluster: DNA polymerase I; n=3; Cystobacterineae... 194 1e-47
UniRef50_Q97VY9 Cluster: Putative ski2-type helicase; n=6; Sulfo... 194 1e-47
UniRef50_A5KKE9 Cluster: Putative uncharacterized protein; n=3; ... 194 2e-47
UniRef50_Q1D7R1 Cluster: DNA polymerase I; n=1; Myxococcus xanth... 193 3e-47
UniRef50_Q8ZY90 Cluster: ATP-dependent, DNA binding helicase; n=... 193 3e-47
UniRef50_Q8F071 Cluster: DNA polymerase I; n=4; Leptospira|Rep: ... 193 4e-47
UniRef50_A4E762 Cluster: Putative uncharacterized protein; n=1; ... 192 5e-47
UniRef50_Q5UYM9 Cluster: Putative ski2-type helicase; n=2; Halob... 192 5e-47
UniRef50_Q2JCJ5 Cluster: DNA polymerase I precursor; n=4; Actino... 192 6e-47
UniRef50_A6DML3 Cluster: DNA-directed DNA polymerase, DNA polime... 192 6e-47
UniRef50_A6CAX6 Cluster: DNA polymerase I; n=1; Planctomyces mar... 192 8e-47
UniRef50_O34996 Cluster: DNA polymerase I; n=46; Bacilli|Rep: DN... 192 8e-47
UniRef50_Q74FR5 Cluster: DNA polymerase I; n=9; Deltaproteobacte... 191 1e-46
UniRef50_Q40J99 Cluster: DNA polymerase A; n=2; Ehrlichia chaffe... 191 1e-46
UniRef50_A6NVK8 Cluster: Putative uncharacterized protein; n=1; ... 191 1e-46
UniRef50_A3EQ00 Cluster: DNA polymerase I; n=1; Leptospirillum s... 191 1e-46
UniRef50_A5WH47 Cluster: DNA polymerase I; n=1; Psychrobacter sp... 191 1e-46
UniRef50_A4AJR3 Cluster: DNA polymerase I; n=1; marine actinobac... 190 2e-46
UniRef50_O51498 Cluster: DNA polymerase I; n=3; Borrelia burgdor... 190 2e-46
UniRef50_Q2S226 Cluster: DNA polymerase I; n=3; Sphingobacterial... 190 3e-46
UniRef50_Q14QK7 Cluster: Probable dna polymeraseIprotein; n=1; S... 189 4e-46
UniRef50_O75417 Cluster: DNA polymerase theta; n=25; Eumetazoa|R... 189 4e-46
UniRef50_Q1II21 Cluster: DNA polymerase I; n=1; Acidobacteria ba... 188 1e-45
UniRef50_A0RYB7 Cluster: Superfamily II helicase; n=1; Cenarchae... 188 1e-45
UniRef50_Q9YFQ8 Cluster: Putative ski2-type helicase; n=1; Aerop... 187 2e-45
UniRef50_Q2EMU8 Cluster: Helicase; n=1; Methanococcus voltae|Rep... 187 2e-45
UniRef50_A4FXS4 Cluster: DEAD/DEAH box helicase domain protein; ... 187 2e-45
UniRef50_Q9A2U2 Cluster: DNA polymerase I; n=15; Alphaproteobact... 186 3e-45
UniRef50_A5TW64 Cluster: DNA-directed DNA polymerase I; n=4; Fus... 186 4e-45
UniRef50_A6KZN3 Cluster: DNA polymerase I; n=1; Bacteroides vulg... 186 5e-45
UniRef50_A6FZM5 Cluster: DNA polymerase I; n=1; Plesiocystis pac... 186 5e-45
UniRef50_Q8KBW5 Cluster: DNA polymerase I; n=10; Chlorobiaceae|R... 185 9e-45
UniRef50_Q6KZ87 Cluster: Helicase involved in UV-protection; n=2... 185 9e-45
UniRef50_Q3IU46 Cluster: ATP-dependent DNA helicase 1; n=1; Natr... 185 9e-45
UniRef50_A7DEV7 Cluster: DNA polymerase I; n=4; Alphaproteobacte... 184 1e-44
UniRef50_P52027 Cluster: DNA polymerase I; n=2; Deinococcus|Rep:... 184 1e-44
UniRef50_Q7VLZ7 Cluster: DNA polymerase I; n=6; Pasteurellaceae|... 184 2e-44
UniRef50_Q7NMX9 Cluster: DNA polymerase; n=3; Cyanobacteria|Rep:... 184 2e-44
UniRef50_A1RXH5 Cluster: DEAD/DEAH box helicase domain protein; ... 184 2e-44
UniRef50_Q2FNA5 Cluster: DEAD/DEAH box helicase-like; n=4; Metha... 183 3e-44
UniRef50_Q97AI2 Cluster: Putative ski2-type helicase; n=2; Therm... 183 3e-44
UniRef50_Q6MEQ2 Cluster: Probable DNA polymerase I; n=1; Candida... 183 4e-44
UniRef50_Q1AUF6 Cluster: DNA polymerase I; n=1; Rubrobacter xyla... 183 4e-44
UniRef50_A5EWG4 Cluster: DNA polymerase I; n=18; Gammaproteobact... 183 4e-44
UniRef50_Q8IS90 Cluster: DNA polymerase I type A; n=3; Leishmani... 183 4e-44
UniRef50_Q7MA76 Cluster: DNA POLYMERASE I; n=3; Epsilonproteobac... 182 7e-44
UniRef50_A6G5W6 Cluster: DNA polymerase I; n=1; Plesiocystis pac... 181 1e-43
UniRef50_A7D7W3 Cluster: DEAD/DEAH box helicase domain protein; ... 181 2e-43
UniRef50_P46835 Cluster: DNA polymerase I; n=41; Bacteria|Rep: D... 180 2e-43
UniRef50_Q057H2 Cluster: 5'-3' exonuclease domain of DNA polymer... 180 3e-43
UniRef50_Q7VGK4 Cluster: DNA polymerase I; n=3; Epsilonproteobac... 179 5e-43
UniRef50_Q4E329 Cluster: Mitochondrial DNA polymerase I protein ... 179 5e-43
UniRef50_Q4JW27 Cluster: DNA polymerase I; n=1; Corynebacterium ... 179 6e-43
UniRef50_Q4FP67 Cluster: DNA polymerase I; n=4; Bacteria|Rep: DN... 179 6e-43
UniRef50_O73946 Cluster: Putative ski2-type helicase; n=3; Pyroc... 179 6e-43
UniRef50_P59199 Cluster: DNA polymerase I; n=45; Bacilli|Rep: DN... 177 1e-42
UniRef50_Q7UI29 Cluster: DNA polymerase I; n=2; Planctomycetacea... 177 2e-42
UniRef50_Q2I6L4 Cluster: PolI DNA polymerase; n=1; uncultured de... 177 2e-42
UniRef50_Q8TH00 Cluster: Predicted Superfamily II helicase; n=1;... 177 2e-42
UniRef50_Q86KS9 Cluster: Similar to Mus musculus (Mouse). DNA po... 176 3e-42
UniRef50_O08307 Cluster: DNA polymerase I; n=4; Chloroflexi (cla... 176 3e-42
UniRef50_Q18YJ9 Cluster: DNA polymerase I; n=2; Desulfitobacteri... 176 4e-42
UniRef50_Q9RAA9 Cluster: DNA polymerase I; n=2; spotted fever gr... 176 4e-42
UniRef50_Q9PEC5 Cluster: DNA polymerase I; n=47; Proteobacteria|... 175 6e-42
UniRef50_Q8IE16 Cluster: Helicase, putative; n=1; Plasmodium fal... 174 2e-41
UniRef50_A5K7V8 Cluster: Helicase, putative; n=1; Plasmodium viv... 173 2e-41
UniRef50_Q8G5M4 Cluster: DNA polymerase I; n=5; Bifidobacterium|... 173 4e-41
UniRef50_A4M7N2 Cluster: DNA polymerase I; n=1; Petrotoga mobili... 172 5e-41
UniRef50_P56105 Cluster: DNA polymerase I; n=5; Helicobacter|Rep... 171 9e-41
UniRef50_Q6F0N3 Cluster: DNA polymerase I; n=3; Mollicutes|Rep: ... 171 1e-40
UniRef50_Q9HMV6 Cluster: Putative ski2-type helicase; n=1; Halob... 171 2e-40
UniRef50_UPI00006605F7 Cluster: DNA polymerase nu (EC 2.7.7.7).;... 169 7e-40
UniRef50_Q18JP5 Cluster: ATP-dependent DNA helicase; n=1; Haloqu... 169 7e-40
UniRef50_Q92GB7 Cluster: DNA polymerase I; n=11; Rickettsia|Rep:... 168 1e-39
UniRef50_Q2GD93 Cluster: DNA polymerase I; n=1; Neorickettsia se... 167 2e-39
UniRef50_Q7VPX4 Cluster: DNA-directed DNA polymerase I; n=8; Chl... 167 2e-39
UniRef50_A5UYS0 Cluster: DNA polymerase I; n=2; Roseiflexus|Rep:... 167 2e-39
UniRef50_A7PDB5 Cluster: Chromosome chr17 scaffold_12, whole gen... 167 2e-39
UniRef50_A4RWY1 Cluster: Predicted protein; n=2; Ostreococcus|Re... 166 5e-39
UniRef50_Q2HFN4 Cluster: Putative uncharacterized protein; n=1; ... 163 2e-38
UniRef50_Q02DA6 Cluster: Transcriptional regulator, Fis family; ... 163 3e-38
UniRef50_Q1GVH6 Cluster: DNA polymerase I; n=32; Alphaproteobact... 161 2e-37
UniRef50_A2EB56 Cluster: Type III restriction enzyme, res subuni... 160 3e-37
UniRef50_O26901 Cluster: Putative ski2-type helicase; n=3; Metha... 159 4e-37
UniRef50_Q7WZP8 Cluster: DNA polymerase type I; n=1; Bacteroidet... 158 9e-37
UniRef50_Q58524 Cluster: Putative ski2-type helicase (EC 3.6.1.-... 157 3e-36
UniRef50_Q8MWB5 Cluster: DNA polymerase I-like protein A; n=2; T... 155 7e-36
UniRef50_A7RZN4 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ... 154 2e-35
UniRef50_A2ER07 Cluster: DEAD/DEAH box helicase family protein; ... 154 2e-35
UniRef50_A0BQ90 Cluster: Chromosome undetermined scaffold_120, w... 153 3e-35
UniRef50_Q7RMH4 Cluster: Putative uncharacterized protein PY0220... 153 5e-35
UniRef50_Q55CI8 Cluster: DEAD/DEAH box helicase; n=3; Eukaryota|... 152 6e-35
UniRef50_UPI00005A5606 Cluster: PREDICTED: similar to DNA polyme... 152 8e-35
UniRef50_P32639 Cluster: Pre-mRNA-splicing helicase BRR2; n=2; S... 151 1e-34
UniRef50_Q9FNQ1 Cluster: RNA helicase; n=6; Eukaryota|Rep: RNA h... 151 2e-34
UniRef50_A2DUA0 Cluster: Type III restriction enzyme, res subuni... 151 2e-34
UniRef50_Q6FKF7 Cluster: Similar to sp|P32639 Saccharomyces cere... 150 3e-34
UniRef50_Q9SYP1 Cluster: F9H16.5 protein; n=35; Eukaryota|Rep: F... 147 2e-33
UniRef50_A7TSN3 Cluster: Putative uncharacterized protein; n=1; ... 147 2e-33
UniRef50_Q55971 Cluster: DNA polymerase I; n=5; Cyanobacteria|Re... 147 2e-33
UniRef50_Q4QB14 Cluster: DNA polymerase theta (Helicase domain o... 146 3e-33
UniRef50_A2DN52 Cluster: Type III restriction enzyme, res subuni... 146 3e-33
UniRef50_O60072 Cluster: Putative helicase mug81; n=1; Schizosac... 146 4e-33
UniRef50_Q5D892 Cluster: Meiotic recombination protein MER3; n=3... 145 7e-33
UniRef50_A6UT61 Cluster: DEAD/DEAH box helicase domain protein; ... 145 7e-33
UniRef50_A7PM59 Cluster: Chromosome chr14 scaffold_21, whole gen... 144 1e-32
UniRef50_Q2LTY3 Cluster: Helicase; n=1; Syntrophus aciditrophicu... 144 2e-32
UniRef50_O75643 Cluster: U5 small nuclear ribonucleoprotein 200 ... 144 2e-32
UniRef50_Q2URT5 Cluster: RNA helicase BRR2; n=33; Eukaryota|Rep:... 143 3e-32
UniRef50_Q5JGV6 Cluster: Putative ski2-type helicase (EC 3.6.1.-... 143 4e-32
UniRef50_Q4WA08 Cluster: DEAD/DEAH box helicase, putative; n=18;... 142 5e-32
UniRef50_UPI000069FCAD Cluster: DNA polymerase nu (EC 2.7.7.7).;... 142 9e-32
UniRef50_UPI000049A24D Cluster: DEAD/DEAH box helicase; n=1; Ent... 141 2e-31
UniRef50_Q4T4J7 Cluster: Chromosome undetermined SCAF9604, whole... 141 2e-31
UniRef50_UPI0000499F5C Cluster: U5 snRNP-specific 200kd protein;... 140 3e-31
UniRef50_Q4QGA4 Cluster: RNA helicase, putative; n=7; Trypanosom... 140 3e-31
UniRef50_Q118S8 Cluster: DNA polymerase I; n=2; Cyanobacteria|Re... 140 3e-31
UniRef50_Q9VF56 Cluster: CG5205-PA; n=5; Endopterygota|Rep: CG52... 140 3e-31
UniRef50_Q675T1 Cluster: Putative helicase; n=1; Oikopleura dioi... 140 3e-31
UniRef50_A6QZE8 Cluster: Putative uncharacterized protein; n=1; ... 140 3e-31
UniRef50_Q3AI75 Cluster: DNA polymerase I; n=15; Cyanobacteria|R... 139 5e-31
UniRef50_Q013J2 Cluster: RNA helicase; n=4; Viridiplantae|Rep: R... 138 8e-31
UniRef50_Q4UHC2 Cluster: DEAD-box helicase, putative; n=2; Theil... 138 1e-30
UniRef50_Q8DJ89 Cluster: DNA polymerase I; n=5; Cyanobacteria|Re... 138 1e-30
UniRef50_Q3AZ16 Cluster: DNA polymerase A; n=10; Cyanobacteria|R... 138 1e-30
UniRef50_A0CXW7 Cluster: Chromosome undetermined scaffold_30, wh... 138 1e-30
UniRef50_Q235I9 Cluster: Type III restriction enzyme, res subuni... 137 2e-30
UniRef50_A7AM78 Cluster: Sec63 domain containing protein; n=1; B... 136 3e-30
UniRef50_Q6C0Y6 Cluster: Yarrowia lipolytica chromosome F of str... 136 3e-30
UniRef50_Q9UT24 Cluster: Pre-mRNA-splicing factor brr2; n=4; Euk... 136 4e-30
UniRef50_A7AW09 Cluster: Helicase, putative; n=1; Babesia bovis|... 136 6e-30
UniRef50_UPI0000E4A360 Cluster: PREDICTED: similar to RNA helica... 135 7e-30
UniRef50_Q54G57 Cluster: DEAD/DEAH box helicase; n=1; Dictyostel... 134 1e-29
UniRef50_A3GEY0 Cluster: RNA helicase-related protein required f... 134 2e-29
UniRef50_UPI00006CB1FA Cluster: Type III restriction enzyme, res... 134 2e-29
UniRef50_Q4QE98 Cluster: ATP-dependent RNA helicase, putative; n... 132 5e-29
UniRef50_A5E7Q8 Cluster: Putative uncharacterized protein; n=1; ... 132 5e-29
UniRef50_Q5A0Z8 Cluster: Potential spliceosomal U5 snRNP RNA hel... 130 2e-28
UniRef50_Q9XWI5 Cluster: Putative uncharacterized protein; n=2; ... 130 3e-28
UniRef50_Q7S600 Cluster: Putative uncharacterized protein NCU097... 130 3e-28
UniRef50_O13799 Cluster: Uncharacterized helicase C17H9.02; n=1;... 130 3e-28
UniRef50_Q4MYU4 Cluster: ATP-dependent RNA helicase, putative; n... 130 4e-28
UniRef50_Q81EV0 Cluster: DNA polymerase I; n=1; Bacillus cereus ... 128 1e-27
UniRef50_A2DMG9 Cluster: DNA polymerase I family protein; n=1; T... 128 1e-27
UniRef50_Q4DJ49 Cluster: ATP-dependent RNA helicase, putative; n... 128 2e-27
UniRef50_Q4P954 Cluster: Putative uncharacterized protein; n=1; ... 128 2e-27
UniRef50_A4RXZ9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 127 2e-27
UniRef50_Q1ARA6 Cluster: DNA-directed DNA polymerase; n=1; Rubro... 126 5e-27
UniRef50_A2ERS7 Cluster: Type III restriction enzyme, res subuni... 126 5e-27
UniRef50_A2PYH4 Cluster: Helicase-like protein HFM1; n=21; Deute... 126 6e-27
UniRef50_Q5CTJ2 Cluster: U5 small nuclear ribonucleoprotein 200k... 125 1e-26
UniRef50_Q16RG8 Cluster: ATP-dependent DNA helicase mer3; n=2; A... 125 1e-26
UniRef50_Q74ZT5 Cluster: AGR113Wp; n=2; Saccharomycetaceae|Rep: ... 125 1e-26
UniRef50_A3YG29 Cluster: SKI2-family helicase; n=1; Marinomonas ... 123 3e-26
UniRef50_A7ATD0 Cluster: Helicase with zinc finger motif protein... 123 3e-26
UniRef50_P30314 Cluster: DNA polymerase; n=3; Caudovirales|Rep: ... 123 3e-26
UniRef50_A7F217 Cluster: Putative uncharacterized protein; n=1; ... 123 4e-26
UniRef50_Q4XUB3 Cluster: U5 small nuclear ribonucleoprotein-spec... 122 6e-26
UniRef50_A7TG42 Cluster: Putative uncharacterized protein; n=1; ... 122 7e-26
UniRef50_Q5TNG3 Cluster: ENSANGP00000028953; n=1; Anopheles gamb... 122 1e-25
UniRef50_A7F9K6 Cluster: Putative uncharacterized protein; n=1; ... 122 1e-25
UniRef50_Q2GRG2 Cluster: Putative uncharacterized protein; n=1; ... 121 1e-25
UniRef50_P53327 Cluster: Antiviral helicase SLH1; n=11; Saccharo... 121 2e-25
UniRef50_A0DE61 Cluster: Chromosome undetermined scaffold_47, wh... 120 2e-25
UniRef50_Q6L634 Cluster: Mer3; n=2; Coprinopsis cinerea|Rep: Mer... 120 4e-25
UniRef50_A4QWU8 Cluster: Putative uncharacterized protein; n=1; ... 120 4e-25
UniRef50_Q07NP6 Cluster: DEAD/DEAH box helicase domain protein; ... 119 5e-25
UniRef50_Q30L76 Cluster: Gp69; n=1; Listeria phage P100|Rep: Gp6... 119 7e-25
UniRef50_A2EUT9 Cluster: Type III restriction enzyme, res subuni... 119 7e-25
UniRef50_A2XDW7 Cluster: Putative uncharacterized protein; n=1; ... 118 9e-25
UniRef50_Q8N3C0 Cluster: Activating signal cointegrator 1 comple... 118 9e-25
UniRef50_Q4PHY1 Cluster: Putative uncharacterized protein; n=1; ... 118 1e-24
UniRef50_Q1E6Y7 Cluster: Putative uncharacterized protein; n=1; ... 118 1e-24
UniRef50_Q6CR67 Cluster: Similar to sp|P51979 Saccharomyces cere... 118 2e-24
UniRef50_Q5ULQ5 Cluster: Orf59; n=1; Lactobacillus phage LP65|Re... 117 2e-24
UniRef50_A1DP28 Cluster: DEAD/DEAH box DNA helicase (Mer3), puta... 117 2e-24
UniRef50_Q6BM64 Cluster: Similar to ca|CA4212|CaHFM1 Candida alb... 117 3e-24
UniRef50_A5C364 Cluster: Putative uncharacterized protein; n=1; ... 116 4e-24
UniRef50_Q5CRF5 Cluster: U5snrp Brr2 SFII RNA helicase; n=2; Cry... 116 4e-24
UniRef50_Q4XQZ9 Cluster: DNA-directed DNA polymerase, putative; ... 116 4e-24
UniRef50_UPI000050F6D4 Cluster: COG4581: Superfamily II RNA heli... 116 5e-24
UniRef50_P51979 Cluster: ATP-dependent DNA helicase MER3; n=3; S... 116 5e-24
UniRef50_Q016S7 Cluster: ATP-dependent RNA helicase, putative; n... 116 6e-24
UniRef50_Q8I7W9 Cluster: Mitochondrial DNA polymerase A; n=2; Di... 115 9e-24
UniRef50_Q0UNS2 Cluster: Putative uncharacterized protein; n=1; ... 115 9e-24
UniRef50_A6MZ08 Cluster: DNA polymerase I; n=19; Campylobacter|R... 115 1e-23
UniRef50_Q4QAP4 Cluster: DNA polymerase theta (Polymerase domain... 114 1e-23
UniRef50_Q86HT8 Cluster: Similar to Thermotoga maritima. DNA-dir... 114 2e-23
UniRef50_Q5KBS7 Cluster: RNA helicase, putative; n=1; Filobasidi... 113 3e-23
UniRef50_Q8SRJ6 Cluster: HFM1-LIKE ATP-DEPENDENT RNA HELICASE; n... 113 3e-23
UniRef50_Q54S42 Cluster: Putative uncharacterized protein; n=1; ... 112 6e-23
UniRef50_Q385L3 Cluster: DNA polymerase theta, putative; n=1; Tr... 112 6e-23
UniRef50_Q4CZV2 Cluster: RNA helicase, putative; n=3; Trypanosom... 111 2e-22
UniRef50_Q1LWQ1 Cluster: Novel protein similar to vertebrate sup... 109 6e-22
UniRef50_A4S392 Cluster: Predicted protein; n=1; Ostreococcus lu... 109 6e-22
UniRef50_Q8ILK9 Cluster: DNA-directed DNA polymerase, putative; ... 109 6e-22
UniRef50_Q4JVQ3 Cluster: Putative helicase; n=1; Corynebacterium... 109 7e-22
UniRef50_Q4DV47 Cluster: DNA polymerase theta (Polymerase domain... 108 1e-21
UniRef50_A6R6F4 Cluster: Predicted protein; n=1; Ajellomyces cap... 107 2e-21
UniRef50_Q3LW60 Cluster: MRNA splicing factor U5 snRNP; n=1; Big... 106 5e-21
UniRef50_UPI0000DB702F Cluster: PREDICTED: similar to twister CG... 105 7e-21
UniRef50_Q5DHX5 Cluster: SJCHGC05886 protein; n=1; Schistosoma j... 105 7e-21
UniRef50_Q23223 Cluster: Uncharacterized helicase W08D2.7; n=3; ... 105 9e-21
UniRef50_UPI0000D56538 Cluster: PREDICTED: similar to activating... 104 2e-20
UniRef50_A3AMK8 Cluster: Putative uncharacterized protein; n=1; ... 104 2e-20
UniRef50_Q5CVW7 Cluster: Mtr4p like SKI family SFII helicase; n=... 104 2e-20
UniRef50_A2FMN7 Cluster: DEAD/DEAH box helicase family protein; ... 104 2e-20
UniRef50_UPI0000498B4A Cluster: DEAD/DEAH box helicase; n=2; Ent... 103 3e-20
UniRef50_A7BCC7 Cluster: Putative uncharacterized protein; n=1; ... 103 3e-20
UniRef50_Q8SS39 Cluster: Putative ATP-DEPENDENT RNA HELICASE; n=... 103 3e-20
UniRef50_Q5AHI6 Cluster: Putative uncharacterized protein HFM1; ... 102 9e-20
UniRef50_A5K419 Cluster: RNA helicase, putative; n=9; Plasmodium... 101 1e-19
UniRef50_Q4UGW4 Cluster: DNA polymerase i, putative; n=2; Theile... 101 1e-19
UniRef50_Q4UEM0 Cluster: ATP-dependent RNA helicase, putative; n... 101 2e-19
UniRef50_A4FWQ0 Cluster: DEAD/DEAH box helicase domain protein; ... 101 2e-19
UniRef50_P42285 Cluster: Superkiller viralicidic activity 2-like... 101 2e-19
UniRef50_Q6Y7N1 Cluster: ORF86/ORF88/ORF90; n=6; unclassified My... 100 3e-19
UniRef50_Q23DW5 Cluster: DNA polymerase I family protein; n=1; T... 100 3e-19
UniRef50_A2DIP0 Cluster: DEAD/DEAH box helicase family protein; ... 100 3e-19
UniRef50_Q7UNW6 Cluster: Putative helicase; n=1; Pirellula sp.|R... 99 5e-19
UniRef50_Q9LJU4 Cluster: Similarity to DNA polymerase I; n=7; co... 99 5e-19
UniRef50_A5K1L9 Cluster: ATP dependent RNA helicase, putative; n... 99 5e-19
UniRef50_Q58796 Cluster: Probable ATP-dependent helicase MJ1401;... 99 5e-19
UniRef50_Q15477 Cluster: Helicase SKI2W; n=34; Eumetazoa|Rep: He... 99 8e-19
UniRef50_A7AUA6 Cluster: DSHCT (NUC185) domain containing DEAD/D... 99 1e-18
UniRef50_Q8S9E2 Cluster: PolI-like DNA polymerase; n=13; Magnoli... 98 1e-18
UniRef50_P47047 Cluster: ATP-dependent RNA helicase DOB1; n=29; ... 98 1e-18
UniRef50_Q7QWP8 Cluster: GLP_26_39935_43720; n=1; Giardia lambli... 98 2e-18
UniRef50_A0BYR8 Cluster: Chromosome undetermined scaffold_137, w... 97 2e-18
UniRef50_Q8DLX6 Cluster: Tlr0350 protein; n=2; Bacteria|Rep: Tlr... 97 3e-18
UniRef50_Q73D59 Cluster: DEAD/DEAH box helicase domain protein; ... 97 3e-18
UniRef50_Q2JRI9 Cluster: ATP-dependent helicase, DEAD/DEAH box f... 97 3e-18
UniRef50_Q011J0 Cluster: PolI-like DNA polymerase, putative; n=2... 96 6e-18
UniRef50_Q8ILY1 Cluster: POM1, putative; n=4; Plasmodium|Rep: PO... 95 1e-17
UniRef50_Q8SS19 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Enceph... 95 1e-17
UniRef50_UPI0000499A31 Cluster: DNA-directed DNA polymerase; n=2... 95 2e-17
UniRef50_Q381X2 Cluster: RNA helicase, putative; n=1; Trypanosom... 95 2e-17
UniRef50_A6DQ79 Cluster: DEAD/DEAH box helicase domain protein; ... 94 3e-17
UniRef50_Q9SEA2 Cluster: Putative helicase-like protein; n=1; Gu... 94 3e-17
UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-spec... 94 3e-17
UniRef50_Q7XND0 Cluster: OSJNBb0034I13.15 protein; n=3; Oryza sa... 93 4e-17
UniRef50_Q4Q5E2 Cluster: DEAD/DEAH box helicase-like protein, pu... 93 5e-17
UniRef50_A3DFZ4 Cluster: DNA-directed DNA polymerase; n=1; Clost... 93 7e-17
UniRef50_A2G2R0 Cluster: DEAD/DEAH box helicase family protein; ... 93 7e-17
UniRef50_A5DX50 Cluster: Putative uncharacterized protein; n=1; ... 93 7e-17
UniRef50_Q18RM6 Cluster: DNA-directed DNA polymerase; n=2; Desul... 92 9e-17
UniRef50_A7K9K6 Cluster: Putative uncharacterized protein Z596R;... 92 1e-16
UniRef50_Q3W933 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 92 1e-16
UniRef50_Q7RT38 Cluster: POM1; n=5; Plasmodium (Vinckeia)|Rep: P... 92 1e-16
UniRef50_Q8TGZ1 Cluster: Archaea-specific Superfamily II helicas... 92 1e-16
UniRef50_A2DQY6 Cluster: DEAD/DEAH box helicase family protein; ... 91 2e-16
UniRef50_UPI00015C324A Cluster: DNA polymerase I; n=2; unclassif... 91 2e-16
UniRef50_A6FXF1 Cluster: Putative uncharacterized protein; n=1; ... 91 2e-16
UniRef50_Q9AVX9 Cluster: Putative U5 snRNP-specific protein; n=1... 90 5e-16
UniRef50_Q9VCH8 Cluster: CG10210-PA; n=4; Diptera|Rep: CG10210-P... 89 9e-16
UniRef50_Q8IFP1 Cluster: U5 small nuclear ribonucleoprotein-spec... 89 9e-16
UniRef50_Q4Y938 Cluster: DNA polymerase 1, putative; n=3; Plasmo... 89 9e-16
UniRef50_O67779 Cluster: DNA polymerase I; n=6; Aquificales|Rep:... 89 9e-16
UniRef50_Q3EY03 Cluster: DNA polymerase I; n=1; Bacillus thuring... 89 1e-15
UniRef50_A3IRZ6 Cluster: Putative uncharacterized protein; n=1; ... 88 1e-15
UniRef50_A5EWK1 Cluster: DEAD-DEAH box helicase domain protein V... 88 2e-15
UniRef50_A5K1B5 Cluster: POM1, putative; n=1; Plasmodium vivax|R... 88 2e-15
UniRef50_A2FBA2 Cluster: DEAD/DEAH box helicase family protein; ... 88 2e-15
UniRef50_Q2LR62 Cluster: ATP-dependent DNA helicase; n=1; Syntro... 87 3e-15
UniRef50_A7PFD4 Cluster: Chromosome chr11 scaffold_14, whole gen... 87 3e-15
UniRef50_Q7RM59 Cluster: Unnamed protein product; n=2; Plasmodiu... 87 3e-15
UniRef50_A2E3A0 Cluster: Helicase conserved C-terminal domain co... 87 3e-15
UniRef50_Q5B1R6 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-15
UniRef50_A5D075 Cluster: DNA polymerase I-3'-5' exonuclease and ... 87 5e-15
UniRef50_A0B8I7 Cluster: DEAD/DEAH box helicase domain protein; ... 86 6e-15
UniRef50_Q4ESI0 Cluster: DEAD/DEAH box helicase domain protein; ... 86 8e-15
UniRef50_Q193B9 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 86 8e-15
UniRef50_Q09475 Cluster: Uncharacterized helicase C28H8.3; n=2; ... 86 8e-15
UniRef50_Q7QTM9 Cluster: GLP_0_26994_31778; n=1; Giardia lamblia... 85 1e-14
UniRef50_A7AQX3 Cluster: DNA polymerase I, putative; n=1; Babesi... 85 1e-14
UniRef50_UPI00015B48BB Cluster: PREDICTED: similar to GA10159-PA... 85 1e-14
UniRef50_A2FW30 Cluster: Helicase conserved C-terminal domain co... 85 1e-14
UniRef50_A1W8L2 Cluster: DEAD/DEAH box helicase domain protein; ... 84 2e-14
UniRef50_O64235 Cluster: DNA polymerase; n=7; Siphoviridae|Rep: ... 84 3e-14
UniRef50_A0YZ48 Cluster: DNA polymerase I; n=1; Lyngbya sp. PCC ... 83 7e-14
UniRef50_UPI00015BD0F4 Cluster: UPI00015BD0F4 related cluster; n... 82 1e-13
UniRef50_Q16I20 Cluster: Helicase; n=2; Endopterygota|Rep: Helic... 82 1e-13
UniRef50_A5K0Z3 Cluster: DNA-directed DNA polymerase, putative; ... 82 1e-13
UniRef50_Q5JF65 Cluster: DEAD/DEAH box RNA helicase; n=4; Thermo... 81 2e-13
UniRef50_Q5UYF9 Cluster: Pre-mRNA splicing helicase; n=6; Haloba... 81 2e-13
UniRef50_Q5KBF6 Cluster: Translation repressor, putative; n=2; F... 81 3e-13
UniRef50_O14232 Cluster: Uncharacterized helicase C6F12.16c; n=6... 81 3e-13
UniRef50_UPI000155C94B Cluster: PREDICTED: hypothetical protein;... 80 4e-13
UniRef50_Q6ZQK1 Cluster: MKIAA0052 protein; n=6; Coelomata|Rep: ... 80 4e-13
UniRef50_Q8C2W7 Cluster: 2 days pregnant adult female ovary cDNA... 79 9e-13
UniRef50_Q19103 Cluster: Putative uncharacterized protein; n=2; ... 79 9e-13
UniRef50_Q2NF44 Cluster: Predicted helicase; n=1; Methanosphaera... 79 9e-13
UniRef50_Q7RIW3 Cluster: Antiviral protein ski2; n=6; Plasmodium... 79 1e-12
UniRef50_Q4PHM0 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-12
UniRef50_A7SV18 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ... 78 2e-12
UniRef50_A5UNL0 Cluster: Archaea-specific helicase; n=1; Methano... 78 2e-12
UniRef50_A0LNP0 Cluster: DEAD/DEAH box helicase domain protein; ... 77 3e-12
UniRef50_Q55NJ7 Cluster: Putative uncharacterized protein; n=2; ... 77 3e-12
UniRef50_Q84561 Cluster: A241R protein; n=5; Chlorovirus|Rep: A2... 77 5e-12
UniRef50_Q010R7 Cluster: DNA polymerase theta/eta, DEAD-box supe... 77 5e-12
UniRef50_UPI0000D56C16 Cluster: PREDICTED: similar to CG5205-PA;... 76 6e-12
UniRef50_A5K6G8 Cluster: DEAD/DEAH box helicase, putative; n=2; ... 76 6e-12
UniRef50_A4FJW9 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-11
UniRef50_A0MN51 Cluster: DNA polymerase; n=1; Thermus phage phiY... 75 1e-11
UniRef50_A6REV7 Cluster: Antiviral helicase SKI2; n=1; Ajellomyc... 75 1e-11
UniRef50_Q4Q1B9 Cluster: ATP-dependent RNA helicase, putative; n... 75 1e-11
UniRef50_A5E6C5 Cluster: ATP-dependent RNA helicase DOB1; n=1; L... 75 1e-11
UniRef50_Q8PUF4 Cluster: ATP-dependent DNA helicase; n=4; Methan... 75 1e-11
UniRef50_Q46DX3 Cluster: Putative uncharacterized protein; n=1; ... 74 3e-11
UniRef50_Q093I5 Cluster: Putative Ski2-type helicase; n=1; Stigm... 74 3e-11
UniRef50_A7NYL9 Cluster: Chromosome chr6 scaffold_3, whole genom... 74 3e-11
UniRef50_Q550D0 Cluster: Putative uncharacterized protein; n=2; ... 74 3e-11
UniRef50_A0BIQ8 Cluster: Chromosome undetermined scaffold_11, wh... 74 3e-11
UniRef50_Q5KBY3 Cluster: DNA helicase, putative; n=1; Filobasidi... 74 3e-11
UniRef50_Q0W5A2 Cluster: Putative ATP-dependent DNA helicase; n=... 74 3e-11
UniRef50_Q2J9S5 Cluster: DSH-like; n=3; Bacteria|Rep: DSH-like -... 73 5e-11
UniRef50_A1D818 Cluster: DEAD/DEAH box helicase, putative; n=3; ... 73 5e-11
UniRef50_P35207 Cluster: Antiviral helicase SKI2; n=9; Saccharom... 73 5e-11
UniRef50_UPI0000D56550 Cluster: PREDICTED: similar to CG5205-PA,... 73 6e-11
UniRef50_UPI00004988E4 Cluster: DEAD/DEAH box helicase; n=1; Ent... 73 6e-11
UniRef50_A4AK48 Cluster: DNA polymerase I; n=1; marine actinobac... 73 6e-11
UniRef50_Q8SRW4 Cluster: Putative RNA HELICASE OF THE SKI2 SUBFA... 73 6e-11
UniRef50_Q2U010 Cluster: Cytoplasmic exosomal RNA helicase SKI2;... 73 6e-11
UniRef50_Q6AFV9 Cluster: ATP-dependent RNA helicase; n=3; Actino... 73 8e-11
UniRef50_Q23RU2 Cluster: DEAD/DEAH box helicase family protein; ... 73 8e-11
UniRef50_A5K285 Cluster: DNA polymerase 1, putative; n=1; Plasmo... 73 8e-11
UniRef50_UPI0000F2D63A Cluster: PREDICTED: hypothetical protein;... 72 1e-10
UniRef50_Q4T177 Cluster: Chromosome undetermined SCAF10702, whol... 72 1e-10
UniRef50_Q914M3 Cluster: Putative helicase; n=1; Sulfolobus isla... 72 1e-10
UniRef50_Q2QTY0 Cluster: Superkiller viralicidic activity 2-like... 72 1e-10
UniRef50_A4RR89 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 72 1e-10
UniRef50_O59801 Cluster: RNA helicase involved in mRNA catabolis... 72 1e-10
UniRef50_UPI000155DED9 Cluster: PREDICTED: hypothetical protein;... 72 1e-10
UniRef50_UPI0000E2065D Cluster: PREDICTED: hypothetical protein ... 72 1e-10
UniRef50_O67347 Cluster: Putative uncharacterized protein; n=1; ... 72 1e-10
UniRef50_Q6LF21 Cluster: Putative DNA polymerase i; n=1; Plasmod... 72 1e-10
UniRef50_Q23RU6 Cluster: DEAD/DEAH box helicase family protein; ... 72 1e-10
UniRef50_A4RI58 Cluster: Putative uncharacterized protein; n=1; ... 72 1e-10
UniRef50_A2R7X2 Cluster: Similarity to viral mRNA translation in... 72 1e-10
UniRef50_Q8NQE6 Cluster: Superfamily II DNA and RNA helicases; n... 71 2e-10
UniRef50_P74686 Cluster: Antiviral protein; n=3; Chroococcales|R... 71 2e-10
UniRef50_A0JWZ5 Cluster: DEAD/DEAH box helicase domain protein; ... 71 2e-10
UniRef50_UPI0000660749 Cluster: superkiller viralicidic activity... 71 2e-10
UniRef50_A2DKI8 Cluster: Sec63 domain containing protein; n=2; T... 71 3e-10
UniRef50_Q9P7T8 Cluster: DEAD/DEAH box helicase; n=2; Eukaryota|... 71 3e-10
UniRef50_Q7RYD5 Cluster: Putative uncharacterized protein NCU044... 71 3e-10
UniRef50_Q1VBP7 Cluster: DNA polymerase I; n=1; Vibrio alginolyt... 70 4e-10
UniRef50_A2STT3 Cluster: DEAD/DEAH box helicase domain protein; ... 70 4e-10
UniRef50_Q5CPF4 Cluster: MRNA translation inhibitor SKI2 SFII he... 70 6e-10
UniRef50_Q5CH10 Cluster: DNA polymerase theta; n=2; Cryptosporid... 70 6e-10
UniRef50_Q7QP10 Cluster: GLP_83_12455_16540; n=1; Giardia lambli... 69 7e-10
UniRef50_Q6BY98 Cluster: Debaryomyces hansenii chromosome A of s... 69 7e-10
UniRef50_Q2GQ57 Cluster: Putative uncharacterized protein; n=1; ... 69 7e-10
UniRef50_A7F1I6 Cluster: Putative uncharacterized protein; n=1; ... 69 7e-10
UniRef50_A7HG06 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-09
UniRef50_Q6A7Y7 Cluster: Superfamily II RNA helicase; n=1; Propi... 69 1e-09
UniRef50_Q3AZ82 Cluster: DEAD/DEAH box helicase-like; n=31; Cyan... 69 1e-09
UniRef50_A7LR90 Cluster: Putative uncharacterized protein; n=1; ... 69 1e-09
UniRef50_A2R2S0 Cluster: Function: DEAD-box helicases are involv... 69 1e-09
UniRef50_Q9ZBD8 Cluster: Probable helicase helY; n=24; Actinomyc... 69 1e-09
UniRef50_Q0YV15 Cluster: Helicase-like:Type III restriction enzy... 68 2e-09
UniRef50_A4ALS1 Cluster: DNA polymerase A; n=1; marine actinobac... 68 2e-09
UniRef50_Q9ZVW2 Cluster: Expressed protein; n=5; Viridiplantae|R... 68 2e-09
UniRef50_A7EYJ5 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-09
UniRef50_Q47P19 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 67 4e-09
UniRef50_A0LU68 Cluster: DSH domain protein; n=2; Actinomycetale... 67 4e-09
UniRef50_A2ZC12 Cluster: Putative uncharacterized protein; n=2; ... 67 4e-09
UniRef50_Q2UQR0 Cluster: Predicted helicase; n=1; Aspergillus or... 67 4e-09
UniRef50_Q8SCH1 Cluster: Polymerase; n=1; Vibrio phage 1|Rep: Po... 66 5e-09
UniRef50_Q8H9U7 Cluster: DNA polymerase1; n=1; Pseudomonas phage... 66 5e-09
UniRef50_Q8G6A5 Cluster: Probable helicase; n=4; Bifidobacterium... 66 7e-09
UniRef50_A6GDC0 Cluster: DEAD/DEAH box helicase; n=1; Plesiocyst... 66 7e-09
UniRef50_Q7QWP9 Cluster: GLP_26_36454_39915; n=1; Giardia lambli... 66 7e-09
UniRef50_Q8GAK3 Cluster: DNA helicase-like protein; n=1; Arthrob... 66 9e-09
UniRef50_Q08QY6 Cluster: Dead/deah box helicase domain protein; ... 66 9e-09
UniRef50_A7CQP4 Cluster: DEAD/DEAH box helicase domain protein; ... 66 9e-09
UniRef50_Q5CRN9 Cluster: SPAC694.02. SKI family SFII helicase; n... 66 9e-09
UniRef50_Q52PS6 Cluster: Possible DNA polymerase subunit; n=1; X... 65 1e-08
UniRef50_Q8SRQ1 Cluster: PRE-mRNA SPLICING HELICASE; n=1; Enceph... 65 1e-08
UniRef50_Q6CH67 Cluster: Similarities with sp|P35207 Saccharomyc... 65 1e-08
UniRef50_Q6CWL5 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 65 2e-08
UniRef50_O26752 Cluster: ATP-dependent RNA helicase related prot... 65 2e-08
UniRef50_Q94EZ6 Cluster: Similar to Synechocystis antiviral prot... 64 2e-08
UniRef50_Q6A5X1 Cluster: DeaD/DeaH box helicase; n=37; Actinobac... 64 3e-08
UniRef50_A1SZ94 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 3e-08
UniRef50_Q6TMV7 Cluster: Putative helicase; n=1; Streptomyces cl... 64 4e-08
UniRef50_Q08MT2 Cluster: Dead/deah box helicase domain protein, ... 64 4e-08
UniRef50_A7BDZ5 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-08
UniRef50_A4E809 Cluster: Putative uncharacterized protein; n=2; ... 64 4e-08
UniRef50_A4BQA6 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-08
UniRef50_O04538 Cluster: F20P5.20 protein; n=2; core eudicotyled... 64 4e-08
UniRef50_A2X794 Cluster: Putative uncharacterized protein; n=2; ... 64 4e-08
UniRef50_A4YGI4 Cluster: DEAD/DEAH box helicase domain protein; ... 64 4e-08
UniRef50_UPI000023EEC7 Cluster: hypothetical protein FG10059.1; ... 63 6e-08
UniRef50_A6MAG1 Cluster: Gp096; n=1; Lactococcus phage KSY1|Rep:... 63 6e-08
UniRef50_A0YS39 Cluster: Antiviral protein; n=1; Lyngbya sp. PCC... 62 8e-08
UniRef50_Q64BP2 Cluster: Putative uncharacterized protein; n=1; ... 62 8e-08
UniRef50_Q3A6F3 Cluster: DNA polymerase I-3'-5' exonuclease and ... 62 1e-07
UniRef50_Q0YUH5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 62 1e-07
UniRef50_UPI0001554453 Cluster: hypothetical protein ORF062; n=1... 62 1e-07
UniRef50_Q9HNB2 Cluster: DNA repair protein; n=6; Halobacteriace... 62 1e-07
UniRef50_A6REJ6 Cluster: Predicted protein; n=1; Ajellomyces cap... 61 2e-07
UniRef50_Q4MZ24 Cluster: DEAD box RNA helicase, putative; n=1; T... 61 3e-07
>UniRef50_UPI0000DB7978 Cluster: PREDICTED: similar to
mutagen-sensitive 308 CG6019-PA; n=1; Apis
mellifera|Rep: PREDICTED: similar to mutagen-sensitive
308 CG6019-PA - Apis mellifera
Length = 1530
Score = 847 bits (2096), Expect = 0.0
Identities = 418/801 (52%), Positives = 559/801 (69%), Gaps = 9/801 (1%)
Query: 57 VNTASNNSLLNKTAE-GKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDW 115
VN +++NS +N T + ++ + TQ KL WGLP+ I +KYE +G+T MF W
Sbjct: 9 VNLSNSNSSINNTEKTSEINPFISIIPTQ--DRCKLSSWGLPLNILQKYEAKGVTTMFAW 66
Query: 116 QLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKM 175
Q+ CL N KV+ NLVYSAPTSAGKTL+AEIL IKTVLERQKKVI ILPFVS+VREKM
Sbjct: 67 QVECLSNQKVIEKNCNLVYSAPTSAGKTLIAEILMIKTVLERQKKVIFILPFVSVVREKM 126
Query: 176 FYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVV 235
+Y Q++LS SG+RVEGFMG +P+GG H+AI TIEKANS+IN L++ + +LGAV+
Sbjct: 127 YYFQDLLSDSGVRVEGFMGGIAPSGGFATTHIAIATIEKANSLINHLMEEKELINLGAVI 186
Query: 236 VDELHLLGDQNRGYILELLLTKIKYVTSKSDLL-IQVIGMSATLPNLETLATWLNAELFI 294
VDELHL+GD NRGY+LELLLTK++Y+TS+ + + IQ+IGMSATLPNL LA WL+AEL+
Sbjct: 187 VDELHLVGDPNRGYLLELLLTKLRYMTSRDENINIQLIGMSATLPNLSLLAKWLDAELYK 246
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
T FRPIPL E C + YD I +D +L +C+ETI +G SVLIFC
Sbjct: 247 TEFRPIPLNEQCKIGRNIYDNKLCLIRSLTPMPELTMDSDDILHLCIETISDGHSVLIFC 306
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
TKN CE LA+ ++ FCK+G E ++ G ILR QL+SE I E LEQLK SP GLD +L+
Sbjct: 307 STKNWCEKLAEQIAIAFCKLGRENTQLGKILRDQLDSELISETLEQLKRSPTGLDNVLKN 366
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQ 474
T+SFG+ +HHAGLT+DERDIIEG+F+SG++RVL+ATSTLSSGVNLPAR+VIIRSP F +
Sbjct: 367 TVSFGIAFHHAGLTMDERDIIEGSFRSGSLRVLIATSTLSSGVNLPARRVIIRSPKFAGK 426
Query: 475 PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR 534
++ L+Y QM GRAGRMG+DT GESILIC E+K L+ L+P++SC+E +R
Sbjct: 427 LLDSLTYHQMIGRAGRMGKDTAGESILICKPNEQKSAEALISASLEPIESCLEDSAPLIR 486
Query: 535 AILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQ-NNHS 593
A+LE +AS + + +L LY +CTL++ E S++L +K L + E + +Q
Sbjct: 487 ALLEAVASEVVYTPSDLELYINCTLVNLSNEYDSKDL-WNKAIKFLVDNEFLLLQKTEEG 545
Query: 594 ENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGN 653
N +VATA GKACL++S+AP +GL L ELQKAR+C VL+T+LH+IYLVTP + +Q G+
Sbjct: 546 HNRWVATAFGKACLAASIAPREGLLLLEELQKARRCFVLDTELHVIYLVTPLTSGNQIGS 605
Query: 654 IDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALAL 713
IDW+ L LW+ L+++ ++VG+LVGV+E F+ +RG+ + L+IHKRFYTALAL
Sbjct: 606 IDWMTFLELWKMLSESERRVGQLVGVEERFLTSAVRGIVRQ---GKLLSIHKRFYTALAL 662
Query: 714 QDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRL 773
DLV E+ L+ V K+ C RG LQ LQQ++ TFAGM+T FCKQLGW ME+L+SQFQ RL
Sbjct: 663 HDLVREIPLNSVCKKYGCCRGVLQTLQQSASTFAGMITQFCKQLGWDCMELLVSQFQTRL 722
Query: 774 HFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKER 833
FG+ NG+RAR+L+ G E L K++PFES KE
Sbjct: 723 QFGVCRELLDLLRLPMLNGLRARSLYKHGITSVADLAIANELDVERALYKALPFESEKEH 782
Query: 834 ENDEKGDIKKRTKIKNIWISG 854
+ + + + KR K++ ++++G
Sbjct: 783 DGEHESEAIKRNKMRTVFVTG 803
Score = 334 bits (822), Expect = 8e-90
Identities = 184/419 (43%), Positives = 256/419 (61%), Gaps = 38/419 (9%)
Query: 1089 ELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNGRKTST 1148
EL G+ V + + L + +R+ L+++A+ +CG FNF+SSK+V ++LG+Y G+K S
Sbjct: 1122 ELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKFNFSSSKEVGEILGLYKGKKISV 1181
Query: 1149 RKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRIT 1208
K+VL + PIS++VM WRKLN +KI+YPL A RI + T T TGRI+
Sbjct: 1182 NKAVLGQSDHPISNLVMSWRKLNVTKSKIIYPLLNLA---QHSSRIHGNCVTSTLTGRIS 1238
Query: 1209 MHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLL 1268
MHEPNLQNVPR F+ + D + R F G++++SADYCQLE+R+L
Sbjct: 1239 MHEPNLQNVPRDFN-----------SKDNSFTISVRMAFIPTVGNIILSADYCQLELRIL 1287
Query: 1269 THFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLS 1328
HFS+D+ L IM+ D+FK+IAA W+ V E EVDD +R+ KQLCYG+IYGMG KTL+
Sbjct: 1288 AHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVDDKMRRHTKQLCYGMIYGMGVKTLA 1347
Query: 1329 QHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITS 1388
++L V E++A F++SF YP I + +V+EE + G++ T+ RRR P +TS
Sbjct: 1348 ENLSVDEVKAKEFLESFMNAYPGISKWLNNVLEEARINGYITTILERRRMFPGLTSINPM 1407
Query: 1389 RRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI-------------NS-----FNPKPR- 1429
++ AERQAVNT +QGSAADI K AM IE + NS N K
Sbjct: 1408 EKSQAERQAVNTKVQGSAADIVKKAMIDIEKRMRFEFSTSLPIMPANSSRKLRSNSKETQ 1467
Query: 1430 -----LILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDE 1483
L+LQ+HDEL+YEV+ + + +++K ME +L VPLPVKLK G TWG L E
Sbjct: 1468 HKGGYLVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQLTVPLPVKLKVGPTWGNLSE 1526
>UniRef50_UPI0000D572BA Cluster: PREDICTED: similar to CG6019-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG6019-PA - Tribolium castaneum
Length = 1588
Score = 844 bits (2087), Expect = 0.0
Identities = 422/767 (55%), Positives = 535/767 (69%), Gaps = 17/767 (2%)
Query: 88 SKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAE 147
S+ L WGLP I KY R IT MF WQ+ CL N K+L NLVYSAPTSAGKTLVAE
Sbjct: 183 SRSLASWGLPAAILDKYASRNITMMFPWQVECLNNPKILTMNKNLVYSAPTSAGKTLVAE 242
Query: 148 ILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHV 207
IL+IKTVLER KKVI ILPFVS+VREKMFY Q+I SG+RVEGFMGS +P GG ++V
Sbjct: 243 ILSIKTVLERSKKVIFILPFVSVVREKMFYFQDIFGGSGVRVEGFMGSYNPPGGFKSVQF 302
Query: 208 AICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDL 267
A+CTIEKANS+IN L +G++ ++G VV+DE+HLLG+ +RGYILELLLTK+KY+T K +
Sbjct: 303 AVCTIEKANSLINGFLQDGSLGEIGTVVIDEMHLLGETHRGYILELLLTKLKYMTLKHQI 362
Query: 268 LIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSN 327
IQ+IGMSATLPNL+TLA WL+AEL++T +RPIPL E+ L+ + YD + + +
Sbjct: 363 EIQIIGMSATLPNLKTLADWLDAELYVTNYRPIPLHEHVLLGDSLYDSRFRLVRTLDPAP 422
Query: 328 YGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRS 387
Y D +L++CLETI CSVLIFC TKN CE+LA ++ F K+G ++ LR
Sbjct: 423 Y--PDTDHILQLCLETITANCSVLIFCPTKNWCENLALQIAQAFYKLGRGQADHA--LRH 478
Query: 388 QLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVL 447
QLN+E I E L QL SP+GLD +L+K +SFGVG+HHAGLTLDERDIIEG F+ G IRVL
Sbjct: 479 QLNAEAIGELLNQLALSPIGLDDVLRKCVSFGVGFHHAGLTLDERDIIEGGFRGGVIRVL 538
Query: 448 VATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAE 507
VATSTLSSGVNLPAR+VIIR+P+F + I+ LSY+QM GRAGRMG+DT GESIL+C + +
Sbjct: 539 VATSTLSSGVNLPARRVIIRTPIFHGRAIDGLSYRQMVGRAGRMGKDTAGESILVCQKKD 598
Query: 508 KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEIL 567
+KI ++ +L+P+ SC+E + RAILEIIAS ++ + ++ L+ CTLL
Sbjct: 599 EKIVRKILEDELEPIVSCLEQDGRLRRAILEIIASGVATTYDDVRLFAKCTLLGQTS--- 655
Query: 568 SQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR 627
+E+ L L E +R+ ++ Y + LGKACL+SS+ P DGL L EL KAR
Sbjct: 656 -----VEEALDFLLCNEFLRL----GDDKYTPSGLGKACLTSSLPPEDGLALLGELDKAR 706
Query: 628 QCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKC 687
QC VL T+L L+YLVTPYS QWGN+DW++ L +WE L M+KVGELVGV+ES+I+
Sbjct: 707 QCFVLNTELQLVYLVTPYSACHQWGNLDWMNYLQVWEKLPTTMQKVGELVGVRESYIVAA 766
Query: 688 LRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFA 747
RG + + K +HKRFY ALALQDLVNE L+ V KF C RG LQ LQ + TFA
Sbjct: 767 TRG-QLPSNNYQKQQVHKRFYIALALQDLVNERPLASVCAKFGCNRGLLQTLQLTAATFA 825
Query: 748 GMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXX 807
GMVTAF KQLGW ++EILISQFQDRLHFG+ NG AR L++AG E
Sbjct: 826 GMVTAFAKQLGWANVEILISQFQDRLHFGVSRDLLDLMRLPLLNGRSARALYNAGLETLI 885
Query: 808 XXXXXXXXXXENVLLKSVPFESAKERENDEKGDIKKRTKIKNIWISG 854
E+ LK VPFES K RE + + +++R K +NIWI+G
Sbjct: 886 QIANSDVATIESAFLKVVPFESGKLREGETEHALRERNKFRNIWITG 932
Score = 336 bits (827), Expect = 2e-90
Identities = 172/411 (41%), Positives = 257/411 (62%), Gaps = 23/411 (5%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
+ E+ +++IL+N EL GI + +S L+ + ++++ I G HF+F SS+ +A
Sbjct: 1201 DTEMSIMRILANIELAGIGANVSTLSNLVDLLTRELKAIERQGHAIAGRHFSFASSRQLA 1260
Query: 1136 KVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIM 1195
K+L N K S +K+ + P++S+++ WRK++A + K L PL E RI
Sbjct: 1261 KILQSDNNSKKSLQKN-----DNPLASLILKWRKISATIGKTLQPLIRLV----ENGRIF 1311
Query: 1196 SSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVM 1255
Y T T TGRITMHEPNLQNV + F I + +E +CR F + G VM
Sbjct: 1312 GCYVTHTATGRITMHEPNLQNVAKDFDI-------------DGVEVSCRKAFVPSQGHVM 1358
Query: 1256 VSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLC 1315
VSAD+CQLE+R+L H S D L I++ D+F++IAA W+++ E EV ++LRQ+AKQ+
Sbjct: 1359 VSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQII 1418
Query: 1316 YGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGR 1375
YGIIYGMG+K L++ L+ E +A+ FM +F YP ++ + +IE C++ GFVETL+GR
Sbjct: 1419 YGIIYGMGSKALAEQLNTDEAQATRFMQTFRNAYPGVQKYISEIIETCRKTGFVETLAGR 1478
Query: 1376 RRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMH 1435
RR+L I + ++ AERQAVNT IQGSAAD+ K AM +E + + +L+L +H
Sbjct: 1479 RRFLAHINHKNGAVKSQAERQAVNTTIQGSAADLVKMAMVRLET-VFLGEKEVKLVLHLH 1537
Query: 1436 DELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEVAL 1486
DEL+YEV E + F+ ++K+ ME +V+L +P PVK+K G +WG L E L
Sbjct: 1538 DELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKVKSGPSWGQLTEYKL 1588
>UniRef50_UPI00015B5D9F Cluster: PREDICTED: similar to Mus308; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to Mus308 -
Nasonia vitripennis
Length = 2242
Score = 818 bits (2024), Expect = 0.0
Identities = 400/793 (50%), Positives = 549/793 (69%), Gaps = 4/793 (0%)
Query: 63 NSLLNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCN 122
N++ + + K+ +++ + + + +L WGLP I +KY+ RGI MF WQ+ CL N
Sbjct: 136 NNITDSFSSSKILSAQALSSIDSQKRLELASWGLPPLILEKYKARGIKTMFPWQVECLAN 195
Query: 123 TKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNIL 182
K+L + NLVYSAPTSAGKTLVAE L +KTVLER+KK I ILPFVS+VREKMFY Q++L
Sbjct: 196 KKILEENKNLVYSAPTSAGKTLVAEFLMLKTVLERKKKAIFILPFVSVVREKMFYFQDLL 255
Query: 183 SSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLL 242
S SG+RVEGFMG +PAGG VH+AI TIEKANS++NRL+++G++ LGAVV+DELHLL
Sbjct: 256 SDSGVRVEGFMGGVAPAGGFSAVHIAIATIEKANSLVNRLMEDGDLVTLGAVVIDELHLL 315
Query: 243 GDQNRGYILELLLTKIKYVT-SKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIP 301
GD RGY+LELLLTK++Y+T S ++ IQ+IGMSATLPNL +A WL+AEL+ T FRPIP
Sbjct: 316 GDPGRGYLLELLLTKLRYMTLSVEEVDIQLIGMSATLPNLPLIADWLDAELYKTDFRPIP 375
Query: 302 LEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
L E C + D I E + + V+ D+++++C+ETI G LIFC TKN CE
Sbjct: 376 LNEQCKFGSSLLDAKKNIIRELQPAPDIVNDTDNIIQLCIETINGGHGTLIFCPTKNWCE 435
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVG 421
LA L++TF ++G + + G ILR + E + E L QLK+ PVGLD +L+KT+S+GV
Sbjct: 436 KLAIQLATTFFQLGRDNTPHGQILRKNIELESLQEVLLQLKSCPVGLDSVLRKTVSYGVA 495
Query: 422 YHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSY 481
+HHAGLT+DERDIIEG F+ G+++VL+ATSTLSSGVNLPAR+VIIRSP+F +P++ L+Y
Sbjct: 496 FHHAGLTMDERDIIEGGFRVGSLKVLIATSTLSSGVNLPARRVIIRSPMFNGKPLDKLTY 555
Query: 482 KQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIA 541
+QM GRAGRMG+DT+GESIL+C E++ LM LDP+ SC+E +RA+LE +A
Sbjct: 556 QQMIGRAGRMGKDTEGESILVCKPNERQAATTLMTSSLDPIVSCLEGSGPLIRALLEAVA 615
Query: 542 SNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATA 601
S + + + L Y+ CT + +E + ++ E + N L+ + E VAT
Sbjct: 616 SQVVRTPEHLDFYSKCTFVYKCEESEVKEMVDEAVKFLIANEFLLVKDSEEKEKRMVATC 675
Query: 602 LGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLN 661
LGKACLS+S+ P +GL LF ELQ+AR+C VL+T+LH+IYLVTP++ SQ IDW+ L
Sbjct: 676 LGKACLSASIPPREGLFLFEELQRARKCFVLDTELHVIYLVTPFNSGSQINQIDWMIFLE 735
Query: 662 LWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVH 721
LW +L+++ ++VG+LVGV E F++ +RG+ +K LNIH+RF+TA+AL DLV EV
Sbjct: 736 LWRALSESERRVGQLVGVDERFLMTSMRGI-VK--AGKPLNIHRRFFTAMALHDLVREVP 792
Query: 722 LSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXX 781
L+ V K+ C RG LQ LQQ+S TFAGMVT FCK+L W ME+L +QFQ RL FG+
Sbjct: 793 LNTVCKKYNCCRGLLQSLQQSSATFAGMVTNFCKELKWDCMELLFAQFQARLQFGVCRDL 852
Query: 782 XXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERENDEKGDI 841
NG+RAR+LF G E L K++PFES K+ + D + ++
Sbjct: 853 LDLLRLPSLNGLRARSLFKHGITTAAELAVANEIEVEEALNKALPFESEKDFDGDNEAEV 912
Query: 842 KKRTKIKNIWISG 854
KRTK++ ++I+G
Sbjct: 913 AKRTKMRTVFITG 925
Score = 275 bits (675), Expect = 5e-72
Identities = 139/330 (42%), Positives = 214/330 (64%), Gaps = 14/330 (4%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ + IL+N EL G ++ E + L T +++ ++++AF+ G FNF SSK+V+
Sbjct: 1902 DIEMPTILILANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVS 1961
Query: 1136 KVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIM 1195
+VLG+ + T K+ L S PIS++V WRKL + TKI++PL + + + +RI
Sbjct: 1962 QVLGLNKRGRACTNKNALKSCENPISNLVTLWRKLTTVQTKIVFPLLQ---LERKNNRIH 2018
Query: 1196 SSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVM 1255
+ T+T TGR++MHEPNLQ +PR F + S ++ + R F A G++M
Sbjct: 2019 GNCITYTVTGRVSMHEPNLQTIPRDFKSDI---------SGCIL--SVRMAFVPASGNIM 2067
Query: 1256 VSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLC 1315
+SAD+CQLE+R+L HFS+D L +++ D+FKSIAA + E +VDDD+RQ+AKQLC
Sbjct: 2068 LSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVDDDMRQRAKQLC 2127
Query: 1316 YGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGR 1375
Y +IYGMG K+L++ L +E EA ++++F TY IRV+ V E+ + +GFV T++ R
Sbjct: 2128 YAMIYGMGAKSLAETLSATESEAKDYLEAFMGTYKGIRVWLTGVCEQARVEGFVSTIANR 2187
Query: 1376 RRYLPDITSHITSRRNTAERQAVNTMIQGS 1405
RR LP I S I++ ++ AERQAVNT +QGS
Sbjct: 2188 RRILPGINSKISAVKSQAERQAVNTKVQGS 2217
>UniRef50_O18475 Cluster: CG6019-PA; n=3; Sophophora|Rep: CG6019-PA -
Drosophila melanogaster (Fruit fly)
Length = 2059
Score = 780 bits (1928), Expect = 0.0
Identities = 384/796 (48%), Positives = 546/796 (68%), Gaps = 21/796 (2%)
Query: 89 KKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEI 148
+ + W LP+ I +Y+++G+ +MFDWQ+ CL ++LF+ NLVYSAPTSAGKTLV+EI
Sbjct: 209 RSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEI 268
Query: 149 LTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVA 208
L +KTVLER KKV++ILPF+S+VREKMFY+Q++L+ +G RVEGF G +P GG +++HVA
Sbjct: 269 LMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPGGFESLHVA 328
Query: 209 ICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL 268
ICTIEKANS++N+L++ G +E +G VVVDE+HL+ D+ RGYILELLL KI Y++ ++ L
Sbjct: 329 ICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQ 388
Query: 269 IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNY 328
IQVI MSATL N++ L +WL+AEL+IT +RP+ L+E V YD K + +
Sbjct: 389 IQVITMSATLENVQLLQSWLDAELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKV 448
Query: 329 ---GV-SCNDSVLKICLETIKEGCSVLIFCMTKNRCESLA-QLLSSTFCKIGCEGSEFGM 383
G+ + +D V +C+ET+ EGCSV++FC +K+ CE+LA QL ++ +I E + G
Sbjct: 449 LLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKSE-TVLGQ 507
Query: 384 ILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGA 443
LR+ LN I E +QL++ P GLD ++ K I++ +HHAGLT +ERDIIE +FK+GA
Sbjct: 508 RLRTNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGA 567
Query: 444 IRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC 503
++VLVATSTLSSGVNLPAR+V+IRSP+F + ++ L+Y+QM GRAGRMG+DT GESILIC
Sbjct: 568 LKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILIC 627
Query: 504 SEAEKKIGFNLMMGDLDPVKSCIET--KEKYMRAILEIIASNISCSKQELLLYTDCTLLS 561
+E ++G +L++ +L P+ SC++ RA+LE+I+S ++ +K+++ + +CTLLS
Sbjct: 628 NEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLS 687
Query: 562 AQKEILSQNL---------ILEDTLKELENYELIRIQNNHSENH--YVATALGKACLSSS 610
AQK ++ + D L L YE +R+Q N YVAT LG ACL+SS
Sbjct: 688 AQKAFHAKEKPPDEESDANYINDALDFLVEYEFVRLQRNEERETAVYVATRLGAACLASS 747
Query: 611 MAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAM 670
M P DGL LF ELQK+R+ VLE++LH +YLVTPYSV Q +IDWL +++WE L+ M
Sbjct: 748 MPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLYVHMWEKLSSPM 807
Query: 671 KKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQ 730
KKVGELVGV+++F+ K LRG LD ++ IHKRFY ALAL++LVNE ++ V +K++
Sbjct: 808 KKVGELVGVRDAFLYKALRG--QTKLDYKQMQIHKRFYIALALEELVNETPINVVVHKYK 865
Query: 731 CARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXX 790
C RG LQ LQQ + TFAG+VTAFC L W ++ +++SQF+DRL FGI
Sbjct: 866 CHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDLMRIPDL 925
Query: 791 NGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERENDEKGDIKKRTKIKNI 850
+ RAR LFDAG E VL S+ F+SAK+ +++ + KR ++N
Sbjct: 926 SQKRARALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQHDHENADEAAKRNVVRNF 985
Query: 851 WISGCCETALGNIARL 866
+I+G + A+L
Sbjct: 986 YITGKAGMTVSEAAKL 1001
Score = 317 bits (778), Expect = 2e-84
Identities = 172/421 (40%), Positives = 252/421 (59%), Gaps = 23/421 (5%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ + L EL G K+ + +L + ++ K ++ G FN SS+ VA
Sbjct: 1652 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVA 1711
Query: 1136 KVLGIYNGRK--TSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDR 1193
KVLG++ K +T + VL N+PIS +++ +RKL+ +L K + PL E C + DR
Sbjct: 1712 KVLGLHRKAKGRVTTSRQVLEKLNSPISHLILGYRKLSGLLAKSIQPLME-CC---QADR 1767
Query: 1194 IMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGS 1253
I T+T TGRI+M EPNLQNV + FSI + +V+ +CR+ F S
Sbjct: 1768 IHGQSITYTATGRISMTEPNLQNVAKEFSIQV---------GSDVVHISCRSPFMPTDES 1818
Query: 1254 -VMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAK 1312
++SAD+CQLEMR+L H S+D AL +MKS D+F +IAA W+ + E EV DLR K
Sbjct: 1819 RCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNSTK 1878
Query: 1313 QLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETL 1372
Q+CYGI+YGMG ++L++ L+ SE EA + D F + Y IR +T V+ + +GFVET+
Sbjct: 1879 QVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETI 1938
Query: 1373 SGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPK----- 1427
+GRRRYL +I S + +N AERQAVN+ IQGSAADIAK+A+ +E I + K
Sbjct: 1939 TGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGD 1998
Query: 1428 --PRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEVA 1485
L++ +HDELI+EV + ++ ME+ V+L VPL VKL+ G +WG EV+
Sbjct: 1999 NSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRIGRSWGEFKEVS 2058
Query: 1486 L 1486
+
Sbjct: 2059 V 2059
>UniRef50_Q178I3 Cluster: DNA polymerase theta; n=3; Culicidae|Rep:
DNA polymerase theta - Aedes aegypti (Yellowfever
mosquito)
Length = 1987
Score = 747 bits (1848), Expect = 0.0
Identities = 385/800 (48%), Positives = 515/800 (64%), Gaps = 37/800 (4%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
+ +WGLP I+K Y +GITE+F WQ CL N KV+ +CANLVYSAPTS GKTLV+E L
Sbjct: 409 VSNWGLPDPIAKAYARKGITELFQWQADCLSNAKVILECANLVYSAPTSGGKTLVSEFLV 468
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAIC 210
K V+ER++K I+ILPFV++ REKMFYLQ ILS +GIRVEGF G +P GG +V VA+C
Sbjct: 469 AKAVVERKRKAIVILPFVAVAREKMFYLQEILSPAGIRVEGFFGGHNPPGGFDSVDVAVC 528
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQ 270
TIEKANS++NRLL+ + D+G +VVDE+HL+ D +RGYILELLLTKI++ + + IQ
Sbjct: 529 TIEKANSIVNRLLEQRKLGDVGLLVVDEIHLISDSSRGYILELLLTKIRFASERLGERIQ 588
Query: 271 VIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYG- 329
V+GMSATLPN+E L WL AE F T +RPI L+E + +D K + + +
Sbjct: 589 VVGMSATLPNMELLVEWLGAEQFRTDYRPIELKEMVKLGTCVFDNQKKLLRKLDPDPFQE 648
Query: 330 -VSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ 388
+ D+V ++CLETI EGCSV++FC +K+RCE LA L+ + G G LR +
Sbjct: 649 IMRDQDNVAQLCLETILEGCSVIVFCPSKDRCEQLALHLAEFIYRTLKSGGNLGERLRQE 708
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
+N + + EAL LKN P GLD +L KT +G YHHAGLT DERDIIE +FKSG +R++V
Sbjct: 709 INRDKLEEALGLLKNCPTGLDAVLGKTARYGCVYHHAGLTADERDIIESSFKSGNLRIIV 768
Query: 449 ATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEK 508
ATSTLSSGVNLPAR+VIIR+P+F +N L+Y+QM GRAGR GRD GESIL+C
Sbjct: 769 ATSTLSSGVNLPARRVIIRTPMFGGSVMNSLTYRQMIGRAGRKGRDILGESILMCDGQSS 828
Query: 509 KIGFNLMMGDLDPVKSCIETK--EKYMRAILEIIASNI----------------SCSKQE 550
K + L+ +L P+ SC++ RAILEIIAS + SC K+
Sbjct: 829 KAAWELVKTELKPIASCLDGDGYSHLKRAILEIIASGVASSTADLESFVNCTLFSCEKKC 888
Query: 551 LLLYTDCTLLSAQKEILSQNLILEDT--------------LKELENYELIRIQNN--HSE 594
+T +L + + DT ++ L YE IR+Q N E
Sbjct: 889 RFSFTIDSLEQNHRHVAWSKKRESDTNHGEGESIDPIASCVRFLLEYEFIRMQTNVESGE 948
Query: 595 NHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNI 654
V+T LG ACLS+SMAP DG LF ELQK+RQC VLE++LH IYLVTPYSVS QW NI
Sbjct: 949 TLLVSTPLGNACLSASMAPRDGFLLFSELQKSRQCFVLESELHAIYLVTPYSVSYQWQNI 1008
Query: 655 DWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQ 714
W+ L WE++ AM++VGEL+G++++F++K LRG + D L HKRFYTALAL+
Sbjct: 1009 SWVDFLERWENMDAAMRRVGELIGIRDAFLVKGLRG-KIGEADHESLMTHKRFYTALALK 1067
Query: 715 DLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLH 774
LV+E LS VA +FQC+RG LQ LQQ + TFAG+VTAFC L W + ++I+QF++RL
Sbjct: 1068 RLVDEEPLSVVAQQFQCSRGLLQSLQQVASTFAGIVTAFCTSLNWNLLAMIITQFRERLF 1127
Query: 775 FGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERE 834
FG+Q NG RAR LF+AG E +L + FE+ ++R+
Sbjct: 1128 FGVQPDLLDLMRIASLNGQRARLLFNAGVTGLLELANSDPLKIEQILYNCMSFETEQQRK 1187
Query: 835 NDEKGDIKKRTKIKNIWISG 854
+E+ + ++R +N++++G
Sbjct: 1188 GEEEFETRRRLNQRNLYVTG 1207
Score = 272 bits (667), Expect = 5e-71
Identities = 155/431 (35%), Positives = 244/431 (56%), Gaps = 21/431 (4%)
Query: 1063 QQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKIC 1122
Q + E + E+ + L+ EL G D ++ L+ ++ +Q+ + ++ +
Sbjct: 1565 QLDRTQEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLN 1624
Query: 1123 G-YHFNFNSSKDVAKVLGIYNGR--KTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILY 1179
G NF S+ +VA L + R + T + VL ++P++++V+ +RK+ + L++ +
Sbjct: 1625 GGRRLNFASTSEVAAALKVPRERNGRVKTCRQVLEKIDSPLATLVIAYRKIESNLSRTIE 1684
Query: 1180 PLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVI 1239
PL +G RI + FT TGRI+MHEPNLQ V + F + + V
Sbjct: 1685 PLYRAI---RDGKRIYGNSYCFTSTGRISMHEPNLQTVVKDFKVEI--------DPGHVE 1733
Query: 1240 EFNCRNVFR-AAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDV 1298
F+CR+ F ++P +++SAD+CQLE+ +LTH S+D L +M DVF+ IAA W+ +
Sbjct: 1734 VFSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAKWNRI 1793
Query: 1299 P-EGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTK 1357
E V D+LR K + YG+IYGMG K+++ L+V E A M+ F TYP IR +
Sbjct: 1794 EDEALVSDELRNYTKAIVYGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIRRYAD 1853
Query: 1358 SVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSI 1417
VI+ + +G++ETL+GRRRYLP I S +R+ AERQAV T +QGSAADI K+A+ +
Sbjct: 1854 KVIQVTRERGYIETLTGRRRYLPAIHSTDMKKRSEAERQAVCTTVQGSAADILKNAILRM 1913
Query: 1418 EDGINSFNPKPR-----LILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKL 1472
+ + R L+L MHDELI+EV + ++KS ME+ +L +PL VK+
Sbjct: 1914 MRNLRKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILKSSMENCAKLSLPLRVKV 1973
Query: 1473 KCGYTWGALDE 1483
K G +WG + E
Sbjct: 1974 KMGASWGEMQE 1984
>UniRef50_Q4RK95 Cluster: Chromosome 18 SCAF15030, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF15030, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 2382
Score = 706 bits (1746), Expect = 0.0
Identities = 364/810 (44%), Positives = 514/810 (63%), Gaps = 49/810 (6%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
L WGLP + ++Y + G+ MF+WQ CL +VL ANLVYSAPTSAGKTLV+E+L
Sbjct: 10 LSSWGLPKPVLERYRKHGVMHMFEWQAQCLTVGQVL-QGANLVYSAPTSAGKTLVSELLM 68
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAIC 210
+K VLE ++K ++ILPFVS+ +EKM YLQ++ +G+RVEG+MG+ S AGG ++ VA+C
Sbjct: 69 LKRVLETKRKALLILPFVSVAKEKMHYLQSVFEEAGVRVEGYMGNVSAAGGFTSLDVAVC 128
Query: 211 TIEKANSMINRLLDNGNIEDLGA-----------------------VVVDELHLLGDQNR 247
TIEKANS+INRL++ N+ LG VVVDELH++GD R
Sbjct: 129 TIEKANSLINRLIEEENMGLLGKNTWFFLTSWCHCDFKSPIFAPGMVVVDELHMVGDSGR 188
Query: 248 GYILELLLTKIKYVTSKSDLL------IQVIGMSATLPNLETLATWLNAELFITTFRPIP 301
GY+LELLLTKI Y+ K + IQ+IGMSATLPNL LA+WL AEL+ T +RP+P
Sbjct: 189 GYLLELLLTKICYIAQKQNTAGSLSEGIQIIGMSATLPNLSLLASWLCAELYQTDYRPVP 248
Query: 302 LEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
L+E+ V K YDK+ + + + +D ++ +C ET++EGCSVL+FC +KN CE
Sbjct: 249 LQEHLKVGCKVYDKDLSVVRQFTPALNVQGDDDHIVSLCYETVREGCSVLLFCPSKNWCE 308
Query: 362 SLAQLLSSTFCKI-GCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGV 420
LA ++ F + E S + L+ + +++ + QL +P GLD ILQ+T+ +GV
Sbjct: 309 KLADSIAREFYNLRNSEHSNEAELPPVSLDQQGLVDVVAQLGRTPAGLDSILQRTVPWGV 368
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILS 480
+HHAGLT DERD++EGAF+ G +RVL ATSTLSSGVNLPAR+VI+R+P F ++ L+
Sbjct: 369 AFHHAGLTFDERDVLEGAFRQGLVRVLAATSTLSSGVNLPARRVIVRTPTFNGHLLDPLT 428
Query: 481 YKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKE------KYMR 534
YKQMSGRAGR G DT GES+L+C EAE+ G +L+ G L P+ SC+ +E +R
Sbjct: 429 YKQMSGRAGRKGVDTIGESLLVCKEAERHKGISLLKGSLQPISSCLVRREGEGVTTSMLR 488
Query: 535 AILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKE--------LENYELI 586
AILEII ++ + Q++ LY C+LL+A ++ + + E+T K L + E I
Sbjct: 489 AILEIIVGGVASTPQDVRLYASCSLLAASLKLNMKKELDEETSKGAIEACVEWLMDNEFI 548
Query: 587 RIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYS 646
IQ E Y T LG A LSSS++P + L +F +LQ+A + VLE DLH++YL+TP
Sbjct: 549 SIQKEGEEELYCPTQLGAATLSSSLSPPESLAVFADLQRAMKGFVLENDLHILYLITP-- 606
Query: 647 VSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNK--LNIH 704
+ ++W IDW LWE L+ +MK+V ELVGVQE F+ + + G + + + + +H
Sbjct: 607 LYAEWTTIDWYQFFCLWEQLSSSMKRVAELVGVQEGFLARSVSGKIIAKTEKQRRQMAVH 666
Query: 705 KRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEI 764
KRF+T L L DLVNEV L VA+KF C RG LQ LQQ++ T+AGMVT FCK+LGW +ME+
Sbjct: 667 KRFFTTLVLHDLVNEVPLGTVASKFSCNRGQLQSLQQSASTYAGMVTVFCKRLGWHNMEL 726
Query: 765 LISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKS 824
L+SQ+Q RL FGIQ ++ARTL+ G E L +
Sbjct: 727 LLSQYQTRLSFGIQRELVDLVRVSLLKALQARTLYAQGLRTVAELARATVADVEKALRNA 786
Query: 825 VPFESAKERENDEKGDIKKRTKIKNIWISG 854
VPF+S+K ++ + + +R ++ +W++G
Sbjct: 787 VPFKSSKRAVDESEVEAAERRNLRCVWVTG 816
Score = 177 bits (432), Expect = 1e-42
Identities = 83/183 (45%), Positives = 118/183 (64%)
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R+ F G ++++ADY QLE+R+L H S+D L +++ DVF+ IAA W V V
Sbjct: 2108 RHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCIAAEWKSVDPDSV 2167
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D LRQ+AKQ+CYGIIYGMG K+L + + V E +A+ ++++F+ Y I F K ++ C
Sbjct: 2168 TDGLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIETFKSRYRGINAFLKETVKNC 2227
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ G+V+TL GRRRYLP IT+ + AERQAVNT +QGSAADI K A +I+ +
Sbjct: 2228 GKNGYVQTLMGRRRYLPGITNTNAHVKAHAERQAVNTTVQGSAADIVKLATVNIQKRLRQ 2287
Query: 1424 FNP 1426
P
Sbjct: 2288 TYP 2290
Score = 48.4 bits (110), Expect = 0.001
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 1431 ILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEV 1484
+LQ+HDELIYE + + + ++K ME V+L V + K+K G +WG L+++
Sbjct: 2327 VLQLHDELIYETTDEDVIQVAQIVKREMETAVKLYVKMRAKVKVGPSWGDLEDL 2380
Score = 41.9 bits (94), Expect = 0.13
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 27/122 (22%)
Query: 1143 GRKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIYS--EGDRIMSSY 1198
G++ ST K VL P+ +++ WR++ LTK+++PL + +S DRI
Sbjct: 1952 GKQFSTTKDVLEKLRPLHPLPGLILEWRRITNALTKVVFPLQREKKHHSALSMDRIYPIA 2011
Query: 1199 STFTCT-----------------------GRITMHEPNLQNVPRTFSIPLRYLTFDNTTS 1235
T T T GR++ EPN+QNVP+ F I + + ++ S
Sbjct: 2012 QTHTATGNPQTPEPCETCNMRWLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPS 2071
Query: 1236 DE 1237
+
Sbjct: 2072 QD 2073
>UniRef50_Q6ZM94 Cluster: Novel protein similar to humna
DNA-directed polymerase theta; n=2; Danio rerio|Rep:
Novel protein similar to humna DNA-directed polymerase
theta - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 2254
Score = 698 bits (1726), Expect = 0.0
Identities = 370/818 (45%), Positives = 511/818 (62%), Gaps = 58/818 (7%)
Query: 81 RNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSA 140
R ++ L WGLP + +KY+ G+ MF+WQ CL KVL + NLVYSAPTSA
Sbjct: 7 RPADQLDKLLLSSWGLPKPVLEKYQSLGVHRMFEWQAECLTLGKVL-EGQNLVYSAPTSA 65
Query: 141 GKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAG 200
GKTLV+E+L +K VLE ++K + ILPFVS+ REKMFYLQN+ +GIRVEG+MGS S AG
Sbjct: 66 GKTLVSELLILKRVLETRQKAMFILPFVSVAREKMFYLQNVFQEAGIRVEGYMGSTSAAG 125
Query: 201 GMQNVHVAICTIEKANSMINRLLDNGNIEDLG---------------AVVVDELHLLGDQ 245
G + VA+CTIEKAN ++NRL++ ++ LG VVVDELH++GD
Sbjct: 126 GFSALDVAVCTIEKANGLVNRLIEEDKLDLLGKNNKKYLASYNVVTGTVVVDELHMVGDS 185
Query: 246 NRGYILELLLTKIKYVTSKSDLL---------IQVIGMSATLPNLETLATWLNAELFITT 296
RGY+LELLLTKI+Y+ K+ +Q+IGMSATLPNL+ LA WL+AEL+ T
Sbjct: 186 GRGYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDLLARWLSAELYSTN 245
Query: 297 FRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMT 356
+RP+PL E+ + YD S N G +D ++ +C ET+++G S L+FC +
Sbjct: 246 YRPVPLMEWVKIGTNIYDG---------SLNLGD--DDHIVSLCFETVQDGHSALLFCPS 294
Query: 357 KNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ-LNSEHILEALEQLKNSPVGLDQILQKT 415
KN CE LA + F + + + G +S LN E +L+ L QLK +P GLD +LQ+T
Sbjct: 295 KNWCEKLADSIGREFYNLHHKEMQSGSGGQSIFLNQEGLLDVLAQLKRTPAGLDHVLQRT 354
Query: 416 ISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQP 475
+ +GV +HHAGLT DERDI+EGAF+ G IRVL ATSTLSSGVNLPAR+VIIR+PVF
Sbjct: 355 VPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIRTPVFNGHL 414
Query: 476 INILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKE----- 530
++IL+YKQM GRAGR G DT GES+L+C EAE+ G +L+ G L P+ SC+ +E
Sbjct: 415 LDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSLKPISSCLVKREGEGVT 474
Query: 531 -KYMRAILEIIASNISCSKQELLLYTDCTLLSAQ----------KEILSQNL-ILEDTLK 578
+RAILEII ++ S Q++ +Y CTLL+A E ++N +E ++
Sbjct: 475 TSMLRAILEIIVGGVASSPQDVRMYAACTLLAASIAAEEAHQDGSESEARNKGAIEACIE 534
Query: 579 ELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHL 638
L + E I IQ Y T LG A LSSS++P + L +F +LQ+A + VLE DLH+
Sbjct: 535 WLMDNEFIHIQKEGDVERYCPTHLGSATLSSSLSPPEALGIFADLQRAMKGFVLENDLHI 594
Query: 639 IYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDS 698
+Y +TP V W IDW LWE L AMK+V E+VG+QE F+ + + G + +
Sbjct: 595 LYQITPVYV--DWTTIDWYQFFCLWEQLPSAMKRVAEMVGIQEGFLARSVGGKLIAKTEK 652
Query: 699 NK--LNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQ 756
+ + IHKRF+T L L DLV+E L VA K+ C+RG LQ LQQ++ T+AGMVT FC +
Sbjct: 653 QRRQMAIHKRFFTTLVLLDLVSEEPLGAVAKKYGCSRGQLQSLQQSASTYAGMVTVFCNR 712
Query: 757 LGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXX 816
LGW ++E+L+SQFQ RL FG+Q RARTL+ +GF
Sbjct: 713 LGWHNLELLLSQFQSRLSFGVQRELCDLVRISLLTAQRARTLYSSGFVTVAELARADVSE 772
Query: 817 XENVLLKSVPFESAKERENDEKGDIKKRTKIKNIWISG 854
E L K++PF+S+++ ++ + + ++R ++ IW+SG
Sbjct: 773 VEKALRKAIPFKSSRQAVDESEVEAQERKSMRCIWVSG 810
Score = 202 bits (494), Expect = 4e-50
Identities = 112/284 (39%), Positives = 167/284 (58%), Gaps = 27/284 (9%)
Query: 1228 LTFDNTTSDEVIEFNC--RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDV 1285
L + + D+ ++F+ R+ F G ++++ DY QLE+R+L H S D L ++ S
Sbjct: 1969 LKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGA 2028
Query: 1286 DVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSF 1345
DVFKSIAA W V VDD++RQ+AKQ+CYGIIYGMG K+L + + + E +A+ ++++F
Sbjct: 2029 DVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIETF 2088
Query: 1346 ERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGS 1405
+ Y I+ F + +++C + G+V+TL GR+R+LP I ++ AERQAVNT +QGS
Sbjct: 2089 KSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQGS 2148
Query: 1406 AADIAKSAMCSIEDGI-----------------------NSFNP--KPRLILQMHDELIY 1440
AADI K A +I+ I N F P ILQ+HDELIY
Sbjct: 2149 AADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLRGGYFILQLHDELIY 2208
Query: 1441 EVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEV 1484
EV E + + ++K ME V+L V L VK+K G +WG L ++
Sbjct: 2209 EVAEEDVIQVAQIVKREMESVVKLYVKLRVKVKVGPSWGNLQDL 2252
Score = 62.1 bits (144), Expect = 1e-07
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 1144 RKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIYS--EGDRIMSSYS 1199
++ ST K VL P+ +++ WR++ LTK+++PL + +S + DRI
Sbjct: 1852 KQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPISQ 1911
Query: 1200 TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTS 1235
+ T TGR++ EPN+QNVP+ F I + L ++ TS
Sbjct: 1912 SHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTS 1947
>UniRef50_Q7TQC0 Cluster: DNA polymerase Q; n=17; Tetrapoda|Rep: DNA
polymerase Q - Mus musculus (Mouse)
Length = 2587
Score = 694 bits (1716), Expect = 0.0
Identities = 360/800 (45%), Positives = 510/800 (63%), Gaps = 42/800 (5%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
L +WGLP + +KY G+ +MF+WQ CL VL + NLVYSAPTSAGKTLVAE+L
Sbjct: 113 LANWGLPKAVLEKYHSFGVRKMFEWQAECLLLGHVL-EGKNLVYSAPTSAGKTLVAELLI 171
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAIC 210
+K VLE +KK + ILPFVS+ +EK YLQ++ G++V+G+MGS SP G ++ +A+C
Sbjct: 172 LKRVLETRKKALFILPFVSVAKEKKCYLQSLFQEVGLKVDGYMGSTSPTGQFSSLDIAVC 231
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKS----- 265
TIE+AN ++NRL++ ++ LG VVVDELH+LGD +RGY+LELLLTKI YVT KS
Sbjct: 232 TIERANGLVNRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYVTRKSASHQA 291
Query: 266 ------DLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKY 319
+Q++GMSATLPNL+ +A+WLNAEL+ T FRP+PL E + N YD + K
Sbjct: 292 ESASTLSNAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKIGNSIYDSSMKL 351
Query: 320 ILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIG---- 375
+ E + D ++ +C ETI++ SVLIFC +K CE +A +++ F +
Sbjct: 352 VREFQPLLQVKGDEDHIVSLCYETIQDNHSVLIFCPSKKWCEKVADIIAREFYNLHHQPE 411
Query: 376 --CEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERD 433
+ SEF ++ L+ + +LE ++QLK SP GLD +L+ T+ +GV +HHAGLT +ERD
Sbjct: 412 GLVKSSEFPPVI---LDQKSLLEVMDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERD 468
Query: 434 IIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGR 493
IIEGAF+ G IRVL ATSTLSSGVNLPAR+VIIR+P+F QP++IL+YKQM GRAGR G
Sbjct: 469 IIEGAFRQGFIRVLAATSTLSSGVNLPARRVIIRTPIFSGQPLDILTYKQMVGRAGRKGV 528
Query: 494 DTKGESILICSEAEKKIGFNLMMGDLDPVKSCI----ETKEKYMRAILEIIASNISCSKQ 549
DT GESIL+C +EK G L+ G L+PV SC+ E +RAILEII ++ + Q
Sbjct: 529 DTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQRQGEVTASMIRAILEIIVGGVASTSQ 588
Query: 550 ELLLYTDCTLLSAQ----KEILSQNL------ILEDTLKELENYELIRIQ---NNHSENH 596
++ Y CT L+A K+ + +N ++ + L E I++ +
Sbjct: 589 DMQTYAACTFLAAAIQEGKQGMQRNQDDAQLGAIDACVTWLLENEFIQVAEPGDGTGGKV 648
Query: 597 YVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDW 656
Y T LG A LSSS++P D L +F +LQ+A + VLE DLH++YLVTP V W +IDW
Sbjct: 649 YHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTP--VFEDWISIDW 706
Query: 657 LHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLD--SNKLNIHKRFYTALALQ 714
LWE L +MK+V ELVGV+E F+ +C++G + + ++ IHKRF+T+L L
Sbjct: 707 YRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLL 766
Query: 715 DLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLH 774
DL++E+ L ++ K+ C RG +Q LQQ++ +AGM+T F +LGW +ME+L+SQFQ RL
Sbjct: 767 DLISEIPLKDINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLT 826
Query: 775 FGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERE 834
FGIQ N RAR L+ +GF E L S+PF+SA++
Sbjct: 827 FGIQRELCDLIRVSLLNAQRARFLYASGFLTVADLARADSAEVEVALKNSLPFKSARKAV 886
Query: 835 NDEKGDIKKRTKIKNIWISG 854
++E+ ++R ++ IW++G
Sbjct: 887 DEEEEAAEERRSMRTIWVTG 906
Score = 186 bits (453), Expect = 4e-45
Identities = 87/196 (44%), Positives = 126/196 (64%), Gaps = 2/196 (1%)
Query: 1231 DNTTSDEVIEFNC--RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVF 1288
+ SD + F+ R+ F PG ++++ADY QLE+R+L H S D L +++ + DVF
Sbjct: 2297 EEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVF 2356
Query: 1289 KSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERT 1348
+SIAA W + V DDLRQ AKQ+CYGIIYGMG K+L + + + E +A+ ++DSF+
Sbjct: 2357 RSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSR 2416
Query: 1349 YPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAAD 1408
Y I F + ++ C++ GFVET+ GRRRYLP I + AERQA+NT +QGSAAD
Sbjct: 2417 YKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAAD 2476
Query: 1409 IAKSAMCSIEDGINSF 1424
I K A +I+ + +F
Sbjct: 2477 IVKIATVNIQKQLETF 2492
Score = 62.5 bits (145), Expect = 8e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 1143 GRKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIYS--EGDRIMSSY 1198
GR+ ST K +L+ P+ +++ WR+++ +TK+++PL + + +RI
Sbjct: 2172 GRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVS 2231
Query: 1199 STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTS 1235
+ T TGRIT EPN+QNVPR F I + L ++ S
Sbjct: 2232 QSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPS 2268
Score = 53.2 bits (122), Expect = 5e-05
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 1431 ILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDE 1483
ILQ+HDEL+YEV E + + ++K+ ME ++L V L VK+K G +WG L +
Sbjct: 2532 ILQLHDELLYEVAEEDVVQVAQIVKNEMECAIKLSVKLKVKVKIGASWGELKD 2584
>UniRef50_Q588V7 Cluster: Helicase and polymerase containing protein
TEBICHI; n=5; core eudicotyledons|Rep: Helicase and
polymerase containing protein TEBICHI - Arabidopsis
thaliana (Mouse-ear cress)
Length = 2154
Score = 512 bits (1263), Expect = e-143
Identities = 306/811 (37%), Positives = 460/811 (56%), Gaps = 71/811 (8%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
L W LP E+ Y ++GI++++ WQ+ CL VL NLVY A TSAGK+ VAE+L
Sbjct: 495 LSTW-LPSEVCSVYNKKGISKLYPWQVECLQVDGVL-QKRNLVYCASTSAGKSFVAEVLM 552
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAIC 210
++ V+ K +++LP+VSI EK +L+ +L G V + G+Q ++ VA+C
Sbjct: 553 LRRVIRTGKMALLVLPYVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVC 612
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYV--------- 261
TIEKANS+INRLL+ G + +LG +V+DELH++GDQ+RGY+LEL+LTK++Y
Sbjct: 613 TIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESS 672
Query: 262 --------TSKSDLL--IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENK 311
+ K+D +Q++GMSAT+PN+ +A WL A L+ T FRP+PLEEY V +
Sbjct: 673 SGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGST 732
Query: 312 YYDKNGKYILEA-KSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQ----L 366
Y+K + + K+++ G D ++++C E ++EG SVLIFC ++ CES A+ L
Sbjct: 733 IYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKL 792
Query: 367 LSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAG 426
+ + + E SEF M +RS A++ L+ SP G+D +L++T+ GV YHHAG
Sbjct: 793 IKNVPVNVDGENSEF-MDIRS---------AIDALRRSPSGVDPVLEETLPSGVAYHHAG 842
Query: 427 LTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSG 486
LT++ER+I+E ++ G +RVL ATSTL++GVNLPAR+VI R P+ + I+ YKQMSG
Sbjct: 843 LTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPMIGRDFIDGTRYKQMSG 902
Query: 487 RAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI-ETKEKYMRAILEIIASNIS 545
RAGR G DTKG+S+LIC E K L+ P++SC+ E K AILE++A I
Sbjct: 903 RAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIV 962
Query: 546 CSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKA 605
+ +++ Y CTLL++ K +D+L+ L + + ++ N Y T LG+
Sbjct: 963 QTAKDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKF--LEWNEETKLYTTTPLGRG 1020
Query: 606 CLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWES 665
SS+ P + L + +L +AR+ LV+ +DLHL+YLVTP +V + +W +
Sbjct: 1021 SFGSSLCPEESLIVLDDLLRAREGLVMASDLHLVYLVTPINVGVE---PNWELYYERFME 1077
Query: 666 LTKAMKKVGELVGVQESFII------------------KCLRG--------LNMKHL-DS 698
L+ + VG VGV E F++ K LRG +MK L D
Sbjct: 1078 LSPLEQSVGNRVGVVEPFLMRMAHGATVRTLNRPQDVKKNLRGEYDSRHGSTSMKMLSDE 1137
Query: 699 NKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLG 758
L + KRF+ AL L LV E ++EV F+ ARG +Q LQ+ +G F+ MV+ FC++LG
Sbjct: 1138 QMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGMVQALQENAGRFSSMVSVFCERLG 1197
Query: 759 WKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXE 818
W +E L+++FQ+R+ FG++ G RAR L+ AG
Sbjct: 1198 WHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRARALYKAGLRTSQAIAEASIPEIV 1257
Query: 819 NVLLKSVPFESAKERENDEKGDIKKRTKIKN 849
L +S + A E + + KIKN
Sbjct: 1258 KALFESSAW--AAEGTGQRRIHLGLAKKIKN 1286
Score = 219 bits (535), Expect = 5e-55
Identities = 149/449 (33%), Positives = 233/449 (51%), Gaps = 35/449 (7%)
Query: 1069 ESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNF 1128
E Q +E+ ++ +L++ EL GI +D E R +RD L+KKAF++ G F+
Sbjct: 1701 ELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGMTFSL 1760
Query: 1129 NSSKDVAKVL----------GIYNGR-KTSTRKSVLS--SHNTPISSIVMYWRKLNAILT 1175
++ D+A VL G+ ST K L + P+ I+ R L +L
Sbjct: 1761 HNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLN 1820
Query: 1176 KILYPLTEKACIYSEGDRIMSS---YSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDN 1232
L + A + R T T TGR+++ EPNLQ+V L D
Sbjct: 1821 CTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFKLDKNGRDV 1880
Query: 1233 TTSDEVIEFNCRNVFRAAPGS-VMVSADYCQLEMRLLTHFSEDSAL-TRIMKSDVDVFKS 1290
++ + + N R+ F + ++++ADY Q+E+RL+ HFS DS+L +++ + + DVF
Sbjct: 1881 SSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTM 1940
Query: 1291 IAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYP 1350
IAA W+ E V R + K+L YGI+YGMG L++ L+ + EA + SF+ ++P
Sbjct: 1941 IAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFP 2000
Query: 1351 AIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIA 1410
A+ + I C+ +G+++TL GRRR+L I ++ A+RQAVN+M QGSAADI
Sbjct: 2001 AVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADII 2060
Query: 1411 KSAMCSI-----------------EDGINSFNPKPRLILQMHDELIYEVHETNKSRFISL 1453
K AM +I E + + R++LQ+HDEL+ EV + L
Sbjct: 2061 KIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAML 2120
Query: 1454 MKSVMEDTVELKVPLPVKLKCGYTWGALD 1482
+++ ME+ V L VPL VKLK G TWG+L+
Sbjct: 2121 LQTSMENAVSLLVPLHVKLKVGKTWGSLE 2149
>UniRef50_Q2QTK2 Cluster: DNA polymerase I family protein, expressed;
n=2; Oryza sativa|Rep: DNA polymerase I family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 2065
Score = 506 bits (1249), Expect = e-141
Identities = 302/802 (37%), Positives = 451/802 (56%), Gaps = 80/802 (9%)
Query: 67 NKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVL 126
NK A ++ A+ + + KL W LP E+ Y ++GI E++ WQ+ + N K L
Sbjct: 448 NKFASQEMEANTPTSSVPQKDHSKLSSW-LPPELCAIYMKKGIPELYPWQIELITNPKNL 506
Query: 127 F---DCA---------NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREK 174
F +C NLVY A TSAGK+ VAEIL ++ +L K I++LP+VSI EK
Sbjct: 507 FQLVECLLVEGVLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEK 566
Query: 175 MFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAV 234
+L+ +L G V F G+Q ++ VA+CTIEKANS++N+LL+ G + +LG +
Sbjct: 567 AEHLEQLLEPLGRHVRSFYGNQGGGSLPKDTSVAVCTIEKANSLVNKLLEEGRLSELGII 626
Query: 235 VVDELHLLGDQNRGYILELLLTKIKYV-----------------TSKSDLL--IQVIGMS 275
V+DELH++GDQ+RGY+LEL+LTK++Y + K D +Q+IGMS
Sbjct: 627 VIDELHMVGDQHRGYLLELMLTKLRYAAGEGNSESSSGEISGSSSGKMDATHGLQIIGMS 686
Query: 276 ATLPNLETLATWLN--------AELFITTFRPIPLEEYCLVENKYYDKNGKYI-LEAKSS 326
AT+PN+ +A WL A L+ T FRP+PLEE+ V N+ +DK+ + + K +
Sbjct: 687 ATMPNVAAVADWLQKDEEFTAQAALYQTEFRPVPLEEFIKVGNQVFDKDMNVVRVLPKVA 746
Query: 327 NYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILR 386
+ G D ++++C E +++G SVL+FC ++ CES A+ ++ F K+ GS
Sbjct: 747 DLGGKDPDHIVELCNEVVQQGHSVLLFCSSRKGCESTARHVAK-FLKVASVGS------- 798
Query: 387 SQLNSEH--ILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAI 444
S + SE A+E LK SP GLD +L++T+ GV YHHAGLT++ER+I+E ++ G +
Sbjct: 799 SDVGSEFPDATFAVEALKRSPSGLDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLV 858
Query: 445 RVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICS 504
RVL ATSTL++GVNLPAR+VI R P + I+ YKQMSGRAGR G DTKGESIL+C
Sbjct: 859 RVLAATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMSGRAGRTGIDTKGESILVCK 918
Query: 505 EAEKKIGFNLMMGDLDPVKSCI-ETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQ 563
E K ++ + P++SC+ E K AI+E++A I + ++ Y CTLL++
Sbjct: 919 PEEVKRITGILRSNCTPLESCLSEDKNGMTHAIMEVVAGGIVQTASDIHRYVRCTLLNST 978
Query: 564 KEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCEL 623
K +D+L+ L + ++ N+ Y T LG A SS+ P + L + +L
Sbjct: 979 KPFEDVVKSAQDSLRWLCHKRF--LEWNNETKIYSTTPLGLAAFGSSLNPEESLVVLDDL 1036
Query: 624 QKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESF 683
+AR+ VL DLHL+YLVTP +V + DW + LT + VG VGV E F
Sbjct: 1037 SRAREGFVLACDLHLVYLVTPINVDVE---PDWELYYERFMQLTSLEQSVGNRVGVIEPF 1093
Query: 684 IIKCLRGLNM-----------------------KHLDSNKLNIHKRFYTALALQDLVNEV 720
++ G M ++ L + KRFY AL L L E+
Sbjct: 1094 LMHMAHGAAMPVRGKPQRAGIRNRSPTRGSGGNALINEQALRVSKRFYVALMLSRLAQEI 1153
Query: 721 HLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXX 780
+++V F+ ARG +Q LQ+ +G FA MV+ FC++LGW +E L+++FQ+R+ FG++
Sbjct: 1154 PVTDVCEAFKVARGMIQALQENAGRFASMVSVFCQRLGWHDLEGLVAKFQNRVCFGVRAE 1213
Query: 781 XXXXXXXXXXNGMRARTLFDAG 802
G RAR L+ +G
Sbjct: 1214 IAELTSIPFVKGSRARALYKSG 1235
Score = 156 bits (379), Expect = 4e-36
Identities = 86/235 (36%), Positives = 136/235 (57%), Gaps = 21/235 (8%)
Query: 1254 VMVSADYCQLEMRLLTHFSEDSALTRIM-KSDVDVFKSIAASWSDVPEGEVDDDLRQKAK 1312
++V+ADY Q+E+RL+ HFS+D+AL ++ K D DVF IA+ W+ E + R+ K
Sbjct: 1800 LLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTK 1859
Query: 1313 QLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETL 1372
+ YGI+YGMG +L++ L+ S +A+ + SF+R +P + + + C+ +G+VETL
Sbjct: 1860 RFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETL 1919
Query: 1373 SGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI----------- 1421
GRRR+L IT+ + + A+RQAVN++ QGSAADI K AM + I
Sbjct: 1920 MGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIKVHSAITNGSTVGATVD 1979
Query: 1422 ---------NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVP 1467
+ + LILQ+HDEL+ EV + + L+++VME++ L P
Sbjct: 1980 SIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMENSASLLGP 2034
Score = 54.8 bits (126), Expect = 2e-05
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E ++ +L++ EL GI D + R + L+K+A+K+ G F+ N++ D+A
Sbjct: 1642 IEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSFSLNATADIAD 1701
Query: 1137 VL----------GIYNGR-KTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTE 1183
VL G G+ ST K L PI S++ R L +L L +
Sbjct: 1702 VLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICS 1761
Query: 1184 KACIYSEGDR--IMSSY-STFTCTGRITMHEPNLQ 1215
+A + S+ R I ++ T T TGR++M EPNLQ
Sbjct: 1762 RAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ 1796
>UniRef50_Q2UKG1 Cluster: DNA polymerase theta/eta; n=8;
Eurotiomycetidae|Rep: DNA polymerase theta/eta -
Aspergillus oryzae
Length = 971
Score = 422 bits (1040), Expect = e-116
Identities = 262/779 (33%), Positives = 428/779 (54%), Gaps = 59/779 (7%)
Query: 75 TASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVY 134
TA+ E Q K +GL + + G+ ++ WQ +CL +L +LVY
Sbjct: 123 TATTEDHVYDPCQYLKDPRYGLSPALVANFASVGVKSIYPWQASCLLVPGLLEGKKHLVY 182
Query: 135 SAPTSAGKTLVAEILTIKTVLER-QKKVIIILPFVSIVREKMFYLQNILSS--------- 184
+APT GK+LVA++L +K ++E +K I++LP+V++V+EK+ +L+ I+
Sbjct: 183 TAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKWLRRIVQDVEKRIDDID 242
Query: 185 -----------------SGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGN 227
IRV GF G + +A+CTIEKANS+IN ++ N
Sbjct: 243 DQAAGVEPYHQRWKKLQKSIRVTGFFGGSRTTATWADTDIAVCTIEKANSLINTAIEECN 302
Query: 228 IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATW 287
I DLG VV+DELH+L D++RGY+LEL++TKI + IQ+IGMSATL N E LA W
Sbjct: 303 IGDLGVVVLDELHMLDDEHRGYLLELMVTKILLLQQD----IQIIGMSATLSNTELLAEW 358
Query: 288 LNAELFITTFRPIPLEEYCLVENKYYD-KNGKYILEA---KSSNYGVSCNDSVLKICL-- 341
+NA +I+T+RPIP+++Y + EN Y + + + +S VS D++ +
Sbjct: 359 MNANYYISTYRPIPIDDYLVYENAIYPAATSRQLFQTITRLASMSTVSLTDTMPPHRIIQ 418
Query: 342 -----ETIKEGCSVLIFCMTKNRCESLAQLL---SSTFCKIGCEGSEFGMILRSQLNSEH 393
E + ++ L+ S C++ M + + ++ E
Sbjct: 419 PPAFRELANPTTNAMVALSVDTAAAGYGALVFCGSRQACQLHASIISEAMPVPAAVDPEE 478
Query: 394 I---LEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVAT 450
+ L+ L +L++ P GLD +L+ T+ GVG+HHAG+T +ER+ I A+ G +RVLVAT
Sbjct: 479 LSRRLDLLAELRSLPSGLDPVLENTLVRGVGFHHAGMTTEEREFIAQAYDQGVLRVLVAT 538
Query: 451 STLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKI 510
+L++GVNLPAR+VII ++ + +QM GRAGR G+D GE+ LIC ++E +
Sbjct: 539 CSLAAGVNLPARRVIINGARMGRELVGPAMLRQMCGRAGRKGKDEAGETYLICGKSELQA 598
Query: 511 GFNLMMGDLDPVKSCIETKEKYM-RAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQ 569
+L+ D+ ++SC+ +++ + RAILE IA+ + + + Y CTLL +
Sbjct: 599 VCDLLEADMPAIESCLAPEKRGLKRAILEAIATGLVSGLEAIKEYVKCTLLYRTMDKKIA 658
Query: 570 NLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQC 629
I++ L+EL + +L+ QN+ + YVAT LG+A ++S+ P DGL ++ EL +A Q
Sbjct: 659 YNIMKSALQELVSEDLLH-QND--DESYVATQLGQAVVASAFTPEDGLFVYEELNRALQA 715
Query: 630 LVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLR 689
V++ D+H+ Y+ TP V++ +DW + ++L ++ + + +GVQ F+ + ++
Sbjct: 716 FVMDGDMHVFYMFTPLQVAAT-TQVDWPIFRDQLDNLDESGLRALQFIGVQPGFVNRMVQ 774
Query: 690 -GLNMKHLDSNKLN---IHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGL-QQASG 744
G ++K ++ +++R YTAL L+DL NEV LS VA++++ RG +Q L QQ G
Sbjct: 775 SGASLKEDTPEQIKLAVVYRRAYTALQLRDLSNEVPLSVVASRYRTPRGAVQTLAQQCHG 834
Query: 745 TFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGF 803
AGMV FC+++GW + ++ +DRL G + G AR L D GF
Sbjct: 835 FAAGMV-KFCQRMGWGMLAAVLDHMRDRLEAGARADLLEMAQVTYVKGWTARLLRDNGF 892
>UniRef50_Q54X98 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1238
Score = 405 bits (998), Expect = e-111
Identities = 258/746 (34%), Positives = 406/746 (54%), Gaps = 55/746 (7%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
+K +GLP + Y+ RG+ +++DWQ CL ++ +L NL+YS PTS GKTLVAEI+
Sbjct: 433 VKIFGLPKSVGTIYKRRGMKQLYDWQKECLSDSNLLLG-ENLIYSLPTSGGKTLVAEIIL 491
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAIC 210
+ +L + KK + I PFVSIV EK + S+ I VEG+ G + + IC
Sbjct: 492 FRNLLIKNKKSLFIFPFVSIVCEKTESMHEFSSALQIPVEGYHGCNGTIPVLPGKRLLIC 551
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQ 270
TIEKAN ++N+L+++G + D+G VVVDE+H++GD RG +LE+L++K+ Y+ SK IQ
Sbjct: 552 TIEKANIIVNQLIEDGRLLDIGCVVVDEIHMIGDGERGQLLEVLISKLLYM-SKGQ--IQ 608
Query: 271 VIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGV 330
+IGMSAT+PN++ L W ++ TFRP+PL EY + +K YDK + S G
Sbjct: 609 IIGMSATIPNIDNLQKWFRGGVYQGTFRPVPLTEYIKIGDKLYDKENNLV----KSLQGT 664
Query: 331 SCNDS-VLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQL 389
N++ L++CLE + + SVLIFC +K SLA L+ +F + IL ++
Sbjct: 665 EANENHTLQLCLEVVPKH-SVLIFCASKLLTVSLALQLAKSFPQ---------AILDNRR 714
Query: 390 NSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVA 449
+ IL L + N +++ ++ I GV YH+A LT DER++IE FK ++ VL A
Sbjct: 715 DEREILIQLIESSNG-CKVEEDFKRMIMAGVAYHNADLTNDEREVIERGFKERSLLVLCA 773
Query: 450 TSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKK 509
TSTLS+GVNLPAR+VI+RSP + ++I SY+QM GRAGR G D GESIL+C
Sbjct: 774 TSTLSTGVNLPARRVILRSPRMGRNVLDIRSYRQMVGRAGRAGIDEFGESILMCDHFAPD 833
Query: 510 IGFNLMMGDLDPVKSCI-ETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQ----K 564
L+ +DP+ S I + E + + IL+ I S I+ K +L + T S K
Sbjct: 834 KAKKLLTSPMDPLLSSINKNVESFQKIILDSICSGIASDKFSILSFFSYTFYSTHLLPPK 893
Query: 565 EILSQNLI---LEDTLKELENYELIRIQNNHSENH----------------------YVA 599
++ I + D+++ L I+I N + + Y
Sbjct: 894 DMTPYEYIRKLVNDSVEALIKSGHIQISCNQPDPNDKKTIGTAKFDLDGKPTEESIRYEY 953
Query: 600 TALGKACLSSSMAPNDGLTLFCELQKARQ-CLVLETDLHLIYLVTPYSVSSQWGNIDWLH 658
T LG AC S ++ + L+ EL+ + +V+ LH+ Y+++P + ++D
Sbjct: 954 TPLGYACFRSGLSIKNAKFLYDELRIIQNGAVVISEQLHMCYIISPVHNIPEIPDLD--Q 1011
Query: 659 LLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVN 718
L + V +L+ + + ++ + L+ + + N ++RF++A+ L DL++
Sbjct: 1012 YGKFLSKLKGPKQLVAKLLEISDQYVY--YKQLDEMAITFQEENRNRRFFSAMVLNDLIH 1069
Query: 719 EVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQ 778
EV LS V+ K+ RG +Q L + + A MV+ FCK+LGW +E L++ + RL G++
Sbjct: 1070 EVPLSMVSTKYNLNRGTVQSLMNGAASHAWMVSLFCKKLGWVELEALVNLYIQRLDKGVR 1129
Query: 779 XXXXXXXXXXXXNGMRARTLFDAGFE 804
RAR L+ AGF+
Sbjct: 1130 HEIVPLVEINGVKQARARALWAAGFK 1155
>UniRef50_Q8TDG4 Cluster: DNA helicase HEL308; n=40; Euteleostomi|Rep:
DNA helicase HEL308 - Homo sapiens (Human)
Length = 1101
Score = 376 bits (924), Expect = e-102
Identities = 267/806 (33%), Positives = 428/806 (53%), Gaps = 56/806 (6%)
Query: 33 SSLVVVKEYLEKSENKQKHVNRRFV-NTASNNSLLNKTAEGKLTA-SKEVRNTQKIQSKK 90
SS V + + ++ + H+ N + + +++ + K T S+E+ +K
Sbjct: 250 SSKVRTSSDMNRRKSIKDHLKNAMTGNAKAQTPIFSRSKQLKDTLLSEEINVAKKTIESS 309
Query: 91 LKDWG----LPIEISKKYEE-RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLV 145
D G LP ++ Y + +GI ++++WQ CL V + NL+YS PTS GKTLV
Sbjct: 310 SNDLGPFYSLPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQ-ERKNLIYSLPTSGGKTLV 368
Query: 146 AEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGM 202
AEIL ++ +L +K V++ILP+V+IV+EK+ L + G VE + GS+ P
Sbjct: 369 AEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRR 428
Query: 203 QNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVT 262
+ + I TIEK +S++N L++ G I+ LG VVVDELH++G+ +RG LE+ L KI Y T
Sbjct: 429 EKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILY-T 487
Query: 263 SKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKY--- 319
SK+ Q+IGMSATL N+E L +L AE + + FRP+ L+EY + + Y+ + K
Sbjct: 488 SKTT---QIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKAENG 544
Query: 320 ILEAKSSNYGVSCN------DSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCK 373
+ ++ NY S D ++ + E I S L+FC +K CE++A+++ K
Sbjct: 545 MTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPN-YSCLVFCPSKKNCENVAEMICKFLSK 603
Query: 374 IGCEGSEFGMILRSQLNSEHILEALEQLKNSPVG-LDQILQKTISFGVGYHHAGLTLDER 432
+ E + E ++ LKN G L +L++TI FGV YHH+GLT DER
Sbjct: 604 EYLKHKE-----------KEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDER 652
Query: 433 DIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMG 492
++E A+ +G + + TSTL++GVNLPAR+VI+R+P K+ + YKQM GRAGR G
Sbjct: 653 KLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAG 712
Query: 493 RDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI--ETKEKYMRAILEIIASNISCSKQE 550
DT GESILI E +K+ L+ L+ S + E + L +I I+ + +
Sbjct: 713 IDTIGESILILQEKDKQQVLELITKPLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDD 772
Query: 551 LLLYTDCTLLSAQKEILSQNL----ILEDTLKELENYELIR---IQNNHSENHY--VATA 601
+ + + T Q+++L + I ++L+ L L++ I + E Y T
Sbjct: 773 IYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITK 832
Query: 602 LGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLN 661
LG+A ++ L+ +L+K + LVLE+ LHLIYL TPY + SQ N DW+
Sbjct: 833 LGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQC-NPDWMIYFR 891
Query: 662 LWESLTKAMKKVGELVGVQESFIIKCLRGLNM-KHLDSNKLNIHKRFYTALALQDLVNEV 720
+ L+ A + V ++GV ESFI K G + K +D N +N R Y + L L+ E
Sbjct: 892 QFSQLSPAEQNVAAILGVSESFIGKKASGQAIGKKVDKNVVN---RLYLSFVLYTLLKET 948
Query: 721 HLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLG--WKSMEILISQFQDRLHFGIQ 778
++ V+ KF RG++Q L + +F+ V FC++L W +L+ + +L + ++
Sbjct: 949 NIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYRALLV-ELTKKLTYCVK 1007
Query: 779 XXXXXXXXXXXXNGMRARTLFDAGFE 804
RA+ L+ AG++
Sbjct: 1008 AELIPLMEVTGVLEGRAKQLYSAGYK 1033
>UniRef50_UPI0000499780 Cluster: hypothetical protein 150.t00024;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 150.t00024 - Entamoeba histolytica HM-1:IMSS
Length = 848
Score = 365 bits (898), Expect = 5e-99
Identities = 221/694 (31%), Positives = 378/694 (54%), Gaps = 34/694 (4%)
Query: 100 ISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK 159
+ K+YE++GI E+F+WQ+ CL V NLVYSAPTS+GKTLV+EIL I+ + QK
Sbjct: 83 VRKEYEKKGIQELFEWQVECLKTKGVREGTENLVYSAPTSSGKTLVSEILMIERYCQTQK 142
Query: 160 KVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMI 219
K+I I+P+VS+ +EK Y Q IL S I ++G+ ++ G + + ICTIEK N +I
Sbjct: 143 KMIYIVPYVSMAQEKEEYFQEILKSIKINIKGYFQNR---GIDKEFDIGICTIEKGNGLI 199
Query: 220 NRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLP 279
N+L++ +IE++ +++DE+H++ D+ RG I+E ++ KI + K IQ+IGMSAT+
Sbjct: 200 NKLIEEKSIEEVSLIIIDEIHMIFDKRRGQIIEKIINKIMSIERK----IQIIGMSATIG 255
Query: 280 NLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKI 339
N+ W+ A+ + +T+RPI +EEY + + K +K G E K G +++++I
Sbjct: 256 NISIFEKWIKAKTYQSTYRPIKIEEYIVCKGKVINKEG----EIKRVLKGEGDIENIIEI 311
Query: 340 CLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALE 399
E KE V+ FC TK CE + + K E + ++ E I E ++
Sbjct: 312 MEEAKKERKGVICFCSTKKGCERKGKEIVQGIKKRKIEE------MNKEIEEERI-EMIK 364
Query: 400 QLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNL 459
+++ S G+++ Q I +G+ YHH+G+T++ER IIE +FK G I +++ATSTL+ GVNL
Sbjct: 365 EMERSKFGIEEEFQDMIKYGIVYHHSGITIEERQIIEKSFKKGIITLIIATSTLALGVNL 424
Query: 460 PARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDL 519
PA +VI P K+ + + Y+QMSGRAGR G D KGES + C E E + NLM
Sbjct: 425 PASRVIFDKPKIGKEYLTRVQYQQMSGRAGRFGIDEKGESYIFCKEGEMSVVKNLMKVTN 484
Query: 520 DPVKSCIETKEKYMRA--ILEIIASNISCSKQELLLYTDCTLL---SAQKEILSQ--NLI 572
+ + I+ KE+ ILE I + I +K+++ + + TL +KE +
Sbjct: 485 ENKEIEIQEKEEIQEKEDILEGIYNGIIENKKDIEKWIEKTLYWYKIKEKEGAEEWKKKY 544
Query: 573 LEDTLKELENYELI-RIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKA-RQCL 630
E ++ L++ +I I+ E +G+A + M N ++ + + +
Sbjct: 545 SEQMIEILKHDGMIEEIEEEGGEKRIKCNQIGRATVKGGMGINSSKEIYFNINEGYLKKN 604
Query: 631 VLETDLHLIYLVTPYSVSSQWGNIDWL--HLLNLWESLTKAMKKVGEL---VGVQESFI- 684
++ D++ +YL W + + ++ K + EL +G+ FI
Sbjct: 605 IINKDVYYLYLGINNEYEINWSCFEKKVEEIEDIKNKNNKEYQDYQELMKTIGISPVFIC 664
Query: 685 -IKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQAS 743
++ ++ + + + K+ IHK+FY + L ++++E ++ ++ N+ +RG LQ LQ +
Sbjct: 665 YMESMKKVKLTNEMIKKIQIHKKFYYFIILYEMIHEKNILQIINEMGISRGVLQQLQNNT 724
Query: 744 GTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGI 777
T M+ F +L + + + DR+ FG+
Sbjct: 725 ITTLNMIIQFSNELHNVDLSLYLKLLIDRIKFGV 758
>UniRef50_A7RUT3 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 771
Score = 364 bits (896), Expect = 9e-99
Identities = 239/733 (32%), Positives = 391/733 (53%), Gaps = 44/733 (6%)
Query: 94 WGLPIEISKKY-EERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK 152
+GLPI++ + RGI +++WQ ACL + + NL+YS PTS GKTLVAEIL +K
Sbjct: 2 YGLPIKVKDLFLAYRGIQNLYEWQDACL-KLPAIQEKRNLIYSLPTSGGKTLVAEILMMK 60
Query: 153 TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGMQNVHVAI 209
+L K V+++LPFVSIV+EK+ + G VE + GS+ P + I
Sbjct: 61 ELLVHHKDVVLVLPFVSIVQEKVKTITQFAVELGFVVEEYAGSKGKFPPRKRRTKRALYI 120
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQN-RGYILELLLTKIKYVTSKSDLL 268
TIEKANS++N L++ ++DLG +VVDELH+LG+ RG LE+ L K + T+
Sbjct: 121 ATIEKANSLVNSLIEEKRMDDLGLIVVDELHMLGEGGGRGATLEMCLAKTLFSTNH---- 176
Query: 269 IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYY--------DKNGKYI 320
IQ++GMSATL N+ L +L AE++ FRP+ L+EY V+N Y + +
Sbjct: 177 IQIVGMSATLSNIGDLQKFLMAEVYSNDFRPVELQEYVKVDNIVYKVPCSSSKSEADEIY 236
Query: 321 LEAKSSNYG-----VSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIG 375
++ + + + D ++ + LE I + S LIFC TK CE++A+L+
Sbjct: 237 VQVRRIGHSPDQRHIKDPDHLVPLVLEVIPQH-SCLIFCATKKNCENVAKLMV------- 288
Query: 376 CEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDII 435
EF +Q+ +E L+ L + GL +L+K++ +G+ YHH+GLT+DER +I
Sbjct: 289 ----EFLPREMTQVKIGERMELLQALHHQANGLCPVLKKSVPYGIAYHHSGLTMDERKLI 344
Query: 436 EGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDT 495
E A+ G + L TSTL++GVNLPA++VI+R+P + I YKQM GRAGR G D+
Sbjct: 345 EDAYSQGVLCALTCTSTLAAGVNLPAKRVILRAPYIGRNIIRKSQYKQMIGRAGRAGIDS 404
Query: 496 KGESILICSEAEKKIGFNLMMGDLDPVKSCIETKE-KYMRAI-LEIIASNISCSKQELLL 553
GESILI +K L G+ D +S + +E K +R + L ++ I +K EL+
Sbjct: 405 TGESILIIKTTDKHKVAPLFSGEFDSCQSSLPYQEYKGLRTLFLTLLGLKICQTKSELVS 464
Query: 554 YTDCTLLSAQ-KEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMA 612
+ TL++ Q + + + L+ L + ++ ++ ++ T LG+A S+
Sbjct: 465 FLSRTLMAIQLGDSFDADQHATEALRTLVSLGHVKAVDDCEDHKIEITPLGRATYKGSLD 524
Query: 613 PNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNI--DWLHLLNLWESLTKAM 670
+D +++ E+++A +VL +LHL+YL TP Q G I DW+ +L
Sbjct: 525 IDDTPSVYSEIKRAMGAMVLTNELHLLYLTTPL---DQGGTIQPDWMAYQREVATLGPEE 581
Query: 671 KKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQ 730
+K +GV + +++ G + + +H RFY +L L L+ + V++ FQ
Sbjct: 582 QKAAGHIGVTDLYLLGRAYGRKLTKCPVGEEVVH-RFYLSLMLYKLMQGSSMWHVSSVFQ 640
Query: 731 CARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXX 790
+RGF+Q L ++ ++A + F + + ++++L+ +L +
Sbjct: 641 VSRGFVQNLLTSAASYASCLVRFTEAKEFWTIKLLLEAMVRKLSYTTHLELIPLMEVAGV 700
Query: 791 NGMRARTLFDAGF 803
RAR L+ AG+
Sbjct: 701 KQARARQLYKAGY 713
>UniRef50_A4S324 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 874
Score = 359 bits (882), Expect = 4e-97
Identities = 242/736 (32%), Positives = 383/736 (52%), Gaps = 37/736 (5%)
Query: 89 KKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEI 148
+ L+ WG+P + +G+ E++ WQ+ CL V+ NL+YSAPTS GK+LVA++
Sbjct: 137 RDLEFWGVPESAREALAAKGVRELYPWQMECLSLPGVMEGRVNLLYSAPTSGGKSLVADL 196
Query: 149 LTIKTVLERQKKV-IIILPFVSIVREKMFYLQNILSSSGIRVE---GFMGSQSPAGGMQN 204
L ++ ER V + +LPFV++ E+ L+N+ + + R+ G G P+ N
Sbjct: 197 LLMRRFRERPGSVAMFVLPFVALCEERADSLENLFAGTEFRLRRMYGGRGGAFPSDSKMN 256
Query: 205 VHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVT-- 262
+ + T E+AN + +RLL+ + +L AV+VDELHL+ D +RG +EL LTK+ Y
Sbjct: 257 T-LLVLTPERANQVTSRLLEENRLHELSAVIVDELHLIQDDDRGATMELFLTKLVYAIGN 315
Query: 263 ----SKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGK 318
++ +Q+IGMSA++PNL+ LA WL A L++T FRPI LE V + + K
Sbjct: 316 TRGGTRDQRSMQIIGMSASIPNLKALADWLFARLYVTNFRPIRLEVCVKVGCEIFHPATK 375
Query: 319 YILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLA-QLLSSTFCKIGCE 377
+++ + S N + ++ ETI E SVL+FC T+ C++LA QL + C + +
Sbjct: 376 HVIRTMLNKSPNSDNAHIAELAQETIDEDGSVLVFCSTRAACKTLADQLRNMMQCTVPRQ 435
Query: 378 GSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEG 437
I + L+ + I+ E + +G + I GV +HHAGL+ +E + +
Sbjct: 436 ------IHNATLSRDEIVVGYE----TALGAKSDVLPYIKDGVAFHHAGLSREENEAVAD 485
Query: 438 AFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKG 497
A+K G IRVL TSTL++GVNLPAR+VI+R + +N +QM+GRAGR G DT G
Sbjct: 486 AYKRGVIRVLCCTSTLATGVNLPARRVILRDTNMGWKKLNARDIQQMTGRAGRAGLDTSG 545
Query: 498 ESILICSE-AEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTD 556
+I+ C + AE L+ G D + S + + R +LE +A+ + ++ Y
Sbjct: 546 SAIIFCPKLAELDNVCALVDGPSDELTSAV-AEVGMRRIMLEAVAAGLVKIPTDVQDYVK 604
Query: 557 CTLLSAQKEI-LSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPND 615
CTLLSA + S D L+ + L + N + + A+ALG A M +
Sbjct: 605 CTLLSALNDFDESVRQTAIDALRWCQKNAL--LVWNVTAYLWSASALGNAVAGGMMPLDQ 662
Query: 616 GLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWG---NIDWLHLLN----LWESLTK 668
+ +++ AR+ LVL T LHL+YL+T V G N++ L+ LW +L
Sbjct: 663 VQPIIRDVKTAREDLVLSTPLHLLYLLTAPPVLDDEGAPVNLNKFRTLDALAVLWSNLNA 722
Query: 669 AMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLN--IHKRFYTALALQDLVNEVHLSEVA 726
++ E VG+ E ++ + LR +++L +RF+ AL L DL+ EV + +
Sbjct: 723 EQLRIAEKVGIDERYVQR-LRSNKRDITIAHQLQRFACQRFHVALFLTDLIQEVPIESIT 781
Query: 727 NKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXX 786
+K+ + Q++ FA V A C LGW ME LI++ DR+ G Q
Sbjct: 782 SKYGVRAFDVLEEQKSCARFASYVAAICGTLGWGDMEGLITRISDRITAGAQEEILELTK 841
Query: 787 XXXXNGMRARTLFDAG 802
RAR L+ G
Sbjct: 842 IPYIGIHRARALYTGG 857
>UniRef50_Q1LVP8 Cluster: Novel protein similar to vertebrate DNA
helicase HEL308; n=1; Danio rerio|Rep: Novel protein
similar to vertebrate DNA helicase HEL308 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 710
Score = 355 bits (874), Expect = 4e-96
Identities = 251/699 (35%), Positives = 381/699 (54%), Gaps = 58/699 (8%)
Query: 115 WQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREK 174
WQ CL + NL+YS PTS GKTLVAEIL K +L R+K ++ILP++S+V+EK
Sbjct: 1 WQKTCLSLDSIQ-QRRNLIYSLPTSGGKTLVAEILIFKELLCRKKDALLILPYISLVQEK 59
Query: 175 MFYLQNILSSSGIRVEGFMGSQS---PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDL 231
+ L + VE + GS+ P + I TIEK +S++N L++N ++++
Sbjct: 60 VRGLSSFGIELDFLVEEYAGSKGKFPPVKRRNKNSLYITTIEKGHSLVNSLIENDRLDNI 119
Query: 232 GAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE 291
G VVVDELH+LGD +RG ILE+ L+KI Y+ SKS QVIGMSATL N++ L ++L AE
Sbjct: 120 GLVVVDELHMLGDGSRGAILEMTLSKILYM-SKST---QVIGMSATLGNVKDLQSFLRAE 175
Query: 292 LFITTFRPIPLEEYCLVENKYYDKNGKY---ILEAKSSNYGVSCNDSVLKICLETIKEGC 348
+ FRP+ L+EY +++ Y+ + K ++ N+ D ++ + E I +
Sbjct: 176 NYTNNFRPVELKEYVKIKDSIYEVDPKEEACFTFSRLLNFKKMDPDHIIALATEVIPQQ- 234
Query: 349 SVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVG- 407
S LIFC TK CE+LA ++ CK EF ++ + + IL L +LK+S G
Sbjct: 235 SCLIFCATKKNCENLAGMI----CKY--LNKEF---IKHKEAEKAIL--LGELKSSGNGS 283
Query: 408 LDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR 467
L +LQKTI FG+ YHH+GLT DER ++E A+ SG + +L TSTL++G+NLPAR+VI+R
Sbjct: 284 LCPVLQKTIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILR 343
Query: 468 SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIE 527
SP + YKQM GRAGR G D GESILI + D++ + + +E
Sbjct: 344 SPYVAADFLKRSQYKQMVGRAGRAGIDAMGESILILQDK-----------DINTITTTVE 392
Query: 528 TKEKYMR-AILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELI 586
+ M+ L + + +S K D T+ S Q TLK+ E+
Sbjct: 393 QVKDLMKGTFLGVQEAQVSPEKS----LWDLTVESIQ------------TLKQKNLIEVS 436
Query: 587 RIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYS 646
+NN +N T LG+A S+ + L+ +L K + L+L + LHL+YLVTPY
Sbjct: 437 SDENN--QNILQITRLGRATYKGSVDLSYCDVLYRDLSKGLEGLLLNSFLHLVYLVTPYD 494
Query: 647 VSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKR 706
+ Q DW+ + +L+ A +K+ VGV ESF+ + G +++ S + + R
Sbjct: 495 MVHQC-KPDWMIYFRQFTNLSAAEQKMATTVGVPESFVARKAAGQSVR--KSVDVVVVNR 551
Query: 707 FYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQL-GWKSMEIL 765
Y AL L L+ E +L V+ +FQ RGF+Q L ++ F V F ++L + + + L
Sbjct: 552 LYLALVLFSLLKETNLWIVSERFQLTRGFVQTLLSSASAFGSSVLHFTEELEEFWAYKAL 611
Query: 766 ISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFE 804
+S+ RL + +Q RA+ L+ AG++
Sbjct: 612 LSELTRRLTYCVQAELIPLMEVSGVLEHRAKQLYSAGYK 650
>UniRef50_Q9N389 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Caenorhabditis elegans
Length = 923
Score = 330 bits (810), Expect = 2e-88
Identities = 228/737 (30%), Positives = 383/737 (51%), Gaps = 52/737 (7%)
Query: 96 LPIEISKKYEE-RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
LP + Y + + + + +DWQ CL + ++L D N + S PT AGKTL+AE+L ++
Sbjct: 151 LPERDMEMYRKIKKLDKFYDWQQECLSDKRLL-DGENCILSLPTGAGKTLIAEVLMLREA 209
Query: 155 LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGMQNVHVAICT 211
+ R++ I++LP+V+IV+EK+ L + GI +E + ++ P + V V + T
Sbjct: 210 IVRKRNAILVLPYVAIVQEKISALAPFEDAFGINIEEYASNKGRFPPIKRRKRVSVYVAT 269
Query: 212 IEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQV 271
IEKAN +IN L+ G ++ +G VVVDELH++GD RG ILE LL K Y + Q+
Sbjct: 270 IEKANMLINSLITQGQLDRVGMVVVDELHMIGDGGRGAILEQLLAKFLYKGTG-----QI 324
Query: 272 IGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYD--KNGKY--ILEAKSSN 327
+GMSATLPN++ L L A ++ T FRP+ L E+ + + +NG + ++N
Sbjct: 325 VGMSATLPNIDDLKFALRAFVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPTNN 384
Query: 328 YGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRS 387
+ D + ++ + I + S +IFC K CE++A L++ T + R+
Sbjct: 385 LKSTDPDGICQLLAKLIPKN-SAVIFCPNKKNCENVAVLIAKTL------PAHIRQAKRA 437
Query: 388 QLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVL 447
+ S+ L++ N +D +L++ I GV YHH+GLT DER +E AF G I V+
Sbjct: 438 E--SDAFLQSYLS-DNDDERMDAVLKQCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVV 494
Query: 448 VATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAE 507
ATSTL++GVNLP R+VII++P+ ++ + Y QM+GRAGR G DTKG+ I I E
Sbjct: 495 CATSTLAAGVNLPVRRVIIKAPMVGRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGE 554
Query: 508 KKIGFNLMM-GDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEI 566
++ F M+ D+ S + ++E IL+ + ++ + +E++ +L AQ+
Sbjct: 555 EERWFREMLKSDIPRCMSSLSSEESMGSFILDCVVLKLAENIEEIMTAVRYSLFYAQESP 614
Query: 567 LSQNLILEDTLKELENYELIRI----QNNHSENHYVATA------------LGKACLSSS 610
+ ++E ++K LE + I I Q+ SE A++ LG A ++
Sbjct: 615 ENIRKLVESSVKRLEEHYFITIEPLEQDVASEPSAQASSIPRVPGKISPSDLGNAVFNAG 674
Query: 611 MAPNDGLTLFCEL-QKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKA 669
P++ L +L Q ++ + HL++++TPY Q NI+W L ++ +L +
Sbjct: 675 FDPDEATRLHADLVSSLNQGVIFASHFHLLFIITPY---EQVCNINWDLFLLMYNALPSS 731
Query: 670 MKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKF 729
+K+ G++E FI++ + + +D R Y AL LQ + N + VA +F
Sbjct: 732 ERKLLAECGLEEKFILEAI----ITRVDLTAGTPRMRLYIALMLQKIWNHEPMYTVAERF 787
Query: 730 QCARGFLQGLQQASGTFAGMVTAFCKQLG--WKSMEILISQFQDRLHFGIQXXXXXXXXX 787
+G+LQ Q+S + A + F +++ W + L+ + RL Q
Sbjct: 788 GVEKGWLQATLQSSISQAASIAKFSEKITTMW-PLRKLLPELVQRLSEAAQPELLPLMTV 846
Query: 788 XXXNGMRARTLFDAGFE 804
RA LF AG++
Sbjct: 847 DGIKKARAAILFKAGYK 863
>UniRef50_A6R1R5 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 908
Score = 327 bits (803), Expect = 2e-87
Identities = 224/750 (29%), Positives = 382/750 (50%), Gaps = 86/750 (11%)
Query: 136 APTSAGKTLVAEILTIKTVLERQ-KKVIIILPFVSIVREKMFYLQNILSSSGIRVE---- 190
APT GK+L+A++L +K V+E K+ I++LP+V++V+EK+ +L+ ++ V+
Sbjct: 142 APTGGGKSLIADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVEGVDKNVDMPTT 201
Query: 191 GFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDL---GAVVVDELHLLGDQNR 247
S +P + + + D L G VV+DELH+L D++R
Sbjct: 202 ADEASSAPKWRQPQKSIRVTGFFGGSKTRATWTDTDIAVSLMTWGVVVLDELHMLDDEHR 261
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCL 307
GY++E+++TK+ + IQ++GMSATL N E LA WL+A +I+ +RPIP++E+ +
Sbjct: 262 GYLIEIMVTKLLLLQQD----IQIVGMSATLSNTEVLAKWLHANYYISKYRPIPIQEHLV 317
Query: 308 VENKYYDKNG--KYILEA-------KSSNYGVSC---------------NDSVLKICLET 343
N Y ++ A S NY ++C +++++ + LET
Sbjct: 318 YNNAIYPATSSKEFFRTAMQLNKPDSSPNYSLACRIIDRSMHKELGNPTSNAMVSLALET 377
Query: 344 IKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKN 403
G L+FC ++ C+S A L+S ++ E ++ + L++
Sbjct: 378 ALSGYGALVFCGSRQACQSNAVLVSHAMPDETALDNDL---------LERRMDLIAGLQS 428
Query: 404 SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK 463
P GLD +LQ T+ GV +HHAGLT +ERD+I A+ G +RVL+AT +L++G+NLPAR+
Sbjct: 429 LPCGLDPVLQMTVIKGVAFHHAGLTTEERDLIAEAYDKGTLRVLIATCSLAAGINLPARR 488
Query: 464 VIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVK 523
VI+ + + +QM GRAGR G+D GE+ L C + + + L+ ++ +
Sbjct: 489 VILCGARMGRDLVGPAMLRQMPGRAGRKGKDEVGETYLCCQKDDLEAVAELLEAEMPAIA 548
Query: 524 SCIETKEK---------------YM--------RAILEIIASNISCSKQELLLYTDCTLL 560
S + +++ Y+ RA+LE IA+ + S++ + Y CTLL
Sbjct: 549 SGLTPEKRGIKRFPESTVDHPFVYLLQLMSELTRALLEAIATRLVSSRESINEYVMCTLL 608
Query: 561 SAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLF 620
E +++ TL++L + L+ ++ S Y T LG+A +SSS++P DG+ +
Sbjct: 609 YQNMEAAELFSMVDKTLEDLVDNGLVDLEQAES---YEPTRLGQAVVSSSLSPEDGIFIH 665
Query: 621 CELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWL----HLLNLWESLTKAMKKVGEL 676
EL++A + V++ ++H+ Y+ P SS +IDW + NL ES +A++ VG +
Sbjct: 666 HELKRALKSFVMDGEMHIFYMFAPLQNSSPT-DIDWSIFRDQMNNLDESGIRALQFVG-V 723
Query: 677 VGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFL 736
V V +S G +K D I++R YTA L+DL NEV +S +A ++ RG +
Sbjct: 724 VPVAQS-------GTRIK--DETIARIYQRAYTAFQLRDLSNEVPISTIAQRYNIPRGNV 774
Query: 737 QGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRAR 796
Q L Q FA + FC+++GW + +++ +DRLH G + AR
Sbjct: 775 QTLAQTCHGFAAGIVKFCQRMGWDMLAVVLDHMRDRLHAGARADLLEMAQVAYVKSRTAR 834
Query: 797 TLFDAGFEXXXXXXXXXXXXXENVLLKSVP 826
L++ GF+ VL+ + P
Sbjct: 835 LLWENGFKSLRALAEADPKDLVPVLMMAQP 864
>UniRef50_UPI000023E817 Cluster: hypothetical protein FG06834.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG06834.1 - Gibberella zeae PH-1
Length = 873
Score = 317 bits (779), Expect = 1e-84
Identities = 223/778 (28%), Positives = 381/778 (48%), Gaps = 79/778 (10%)
Query: 112 MFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL-ERQKKVIIILPFVSI 170
++ WQ ACL +L NLVY APT GK+LVA++L +K +L E+ K +++LP+V++
Sbjct: 117 IYPWQKACLKGPGLLTGEKNLVYCAPTGGGKSLVADVLMLKRILQEKGTKALLVLPYVAL 176
Query: 171 VREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIE-----KANSM---INRL 222
V+EK+ +L++++ E + + A+ + K + +
Sbjct: 177 VQEKVRWLRSVVQGLRFAPETAIDDDKRIWRRRADENAVRVVGFFGGGKVRATWADFDIA 236
Query: 223 LDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLE 282
+D+ +I L AVV+DELH++ D +RGY+LEL+ TK+ + +Q++GMSATLPN++
Sbjct: 237 IDDCSISKLSAVVLDELHMIDDDHRGYLLELMATKLLSLEQS----VQIVGMSATLPNMD 292
Query: 283 TLATWLNAELFITTFRPIPLEEYCLVENKYYDKNG----------------------KYI 320
+A WL + T +RP+P+EE+ + + Y K I
Sbjct: 293 MMAKWLGGHCYETRYRPVPIEEHLVYDGNIYPAGSTSSLIKTAAQLNSRTTQTQAQTKPI 352
Query: 321 LEAKSSNYGVSCNDSVLK----ICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGC 376
+ SN+ D VL + ET G L+F ++ CES A+ ++
Sbjct: 353 RRIEPSNH-KELRDPVLNAVVTLACETAVAGFGALVFAGSRGMCESDARWIT-------- 403
Query: 377 EGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIE 436
LR + + ++ L +L++ GLD +L++T+ +GV +HHAGLT +ERD++
Sbjct: 404 RAMPAPHELRIDV-VDRRMDLLGELRSLNTGLDPVLEETVLYGVAFHHAGLTTEERDLVA 462
Query: 437 GAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTK 496
A PAR+VI+ + + + +QM GRAGR G+
Sbjct: 463 AA---------------------PARRVILHNCRMGRDFVGPSMLRQMRGRAGRQGKAPI 501
Query: 497 GESILICSEAEKKIGFNLMMGDLDPVKSCIETK-EKYMRAILEIIASNISCSKQELLLYT 555
GE+ L C E + + LM +L PV SC+ T+ + RA+LE+I+ ++ S + + Y
Sbjct: 502 GETYLCCRENDLEQVVELMNAELPPVASCLSTENRRIQRALLEVISIRLATSHEAISDYF 561
Query: 556 DCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPND 615
+LLS + + +L+E+E+ I S + + AT LGKA ++S++ P+D
Sbjct: 562 SKSLLSHTHDAQFVKKCITSSLEEIESMGFI---TQDSLSMFTATQLGKAIVASAIDPDD 618
Query: 616 GLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGE 675
G+ + EL +A Q V++ ++H++Y TP S ++W N E L ++ +V
Sbjct: 619 GVFVHDELSRALQAFVMDGEMHVLYTFTPVQESGVM--VNWQVFRNEMERLDESGLRVLR 676
Query: 676 LVGVQESFIIKCLRGLNMKHL---DSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCA 732
L+G++ + ++K +G ++ + +H+RFY AL L+DL NEV + VA K+
Sbjct: 677 LLGIKPTTVLKLAQGATLRETTQEEKQVARVHRRFYLALQLRDLCNEVPIHIVARKYDVP 736
Query: 733 RGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNG 792
RG +Q L Q FA + FC+Q+ W M + F DRL G +
Sbjct: 737 RGMVQNLSQTCQGFAAGMIKFCEQMSWGVMAAALDHFSDRLVAGARADLLALAKIPFIKS 796
Query: 793 MRARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERENDEKGDIKKRTKIKNI 850
AR ++ GF VL+++ P + + +++EK + K K K I
Sbjct: 797 RTARVFWENGFRTVATIANADPTELLPVLMQAQPNKIRLKGKDEEKYEEKLLIKAKVI 854
>UniRef50_UPI0000D55858 Cluster: PREDICTED: similar to CG7972-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG7972-PA - Tribolium castaneum
Length = 1079
Score = 291 bits (713), Expect = 1e-76
Identities = 197/561 (35%), Positives = 303/561 (54%), Gaps = 46/561 (8%)
Query: 38 VKEYLEKSENKQKHVNRRFVN----TASNNSLLNKTAEGKLTASKEVRNTQKIQSKKLKD 93
V++ L+K+ + + +N TA LL+ + + K T ++ +
Sbjct: 202 VEQELDKNNENENDITMSGINASFATALKQVLLSNITKDVIPVKKAKSETIGEENGTFTE 261
Query: 94 ----WGLPIEISKKYEE-RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEI 148
+GLP+ + + + +GI E++DWQ CL N + + NL+Y+ PTS GKTLVAEI
Sbjct: 262 VGPFYGLPLRVKELIKMYKGIDELYDWQDECL-NLPAIKEHRNLIYALPTSGGKTLVAEI 320
Query: 149 LTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGMQNV 205
L ++ ++ R+K I ILP+V+IV+EK++ L + VE + S+ P +
Sbjct: 321 LMLREIMCRKKNAIFILPYVAIVQEKVWALSPFAVALDFLVEEYAASKGTYPPRKRRRKN 380
Query: 206 HVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKS 265
+ I TIEKA ++N L++ I ++G +VVDELHL+G+ RG LE LLTKI Y +
Sbjct: 381 SIYIATIEKALGLLNSLIETDRINEIGLIVVDELHLVGEPGRGSTLEALLTKIMYTNAN- 439
Query: 266 DLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEY--C---LVENKYYDKNGKYI 320
IQV+GMSAT+ N+ L +LNA+++ FRP+ L EY C + + Y K+
Sbjct: 440 ---IQVVGMSATIGNVNDLCQFLNADIYSQNFRPVELVEYVKCGPEVAKINYSPKDELLT 496
Query: 321 LEAK------SSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKI 374
+ K SS D + + +E + EG S LIFC +K CE++A LL CK+
Sbjct: 497 VVRKIDHKYPSSGMNSLDPDKLGALVMEVVPEG-SCLIFCASKKNCENVASLL----CKV 551
Query: 375 GCEGSEFGMILRSQLN--SEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDER 432
+ +S L+ E + LK+ L +I +I G+ YHH+GLT +ER
Sbjct: 552 ---------VNKSLLDYKKEEKEQVKHSLKDEGGSLCKIFNVSIQLGIAYHHSGLTNEER 602
Query: 433 DIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMG 492
+IE AF++G I V+ TSTL++GVNLPA++VI+R P ++ I++ YKQM GRAGR G
Sbjct: 603 RVIEEAFRAGVISVICCTSTLAAGVNLPAKRVILRQPYVGREFISLSKYKQMVGRAGRAG 662
Query: 493 RDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKE-KYMR-AILEIIASNISCSKQE 550
GESILIC+ E L++ +D S + E K +R +L I+ ++ ++ +
Sbjct: 663 LGETGESILICNPPELPKVKKLLLSPMDEALSGMHQNEGKGLRHLLLSCISLGVANTRAQ 722
Query: 551 LLLYTDCTLLSAQKEILSQNL 571
L TLL Q E L NL
Sbjct: 723 LQEVAKKTLLHIQSERLEINL 743
Score = 87.0 bits (206), Expect = 3e-15
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 593 SENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWG 652
++ V + LG A + + L+ +L +A++ LVL LHL++LVTPY ++ Q
Sbjct: 804 NDTKLVISKLGCAAIKGNFELARAHQLYDDLHQAQKSLVLLDCLHLLFLVTPYDLAEQI- 862
Query: 653 NIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALA 712
D N++ +L + + ++G+ ++ ++ L ++++ LN RFY L
Sbjct: 863 KPDRNDYYNIFRTLGRNELQTARILGIDDAVALRMLANQPIRNVPERVLN---RFYLTLM 919
Query: 713 LQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLG--WKSMEILISQFQ 770
L DL NE + EV+ KFQ RG +Q L + TFA V FC+ L W +L Q
Sbjct: 920 LYDLWNETPVFEVSEKFQVNRGIVQHLMTGAATFASNVVHFCEGLEEFWTFAHLLNGMSQ 979
Query: 771 DRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFE 804
H ++ RAR L++AG++
Sbjct: 980 RLSHCCVKELLPLMQLPAVKQS-RARQLYNAGYK 1012
>UniRef50_Q16PG6 Cluster: DNA polymerase theta; n=1; Aedes
aegypti|Rep: DNA polymerase theta - Aedes aegypti
(Yellowfever mosquito)
Length = 1128
Score = 279 bits (685), Expect = 3e-73
Identities = 175/497 (35%), Positives = 276/497 (55%), Gaps = 37/497 (7%)
Query: 94 WGLPIEISKKYEE-RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK 152
+GLP +I E RGITEM+DWQ CL + + + NL+Y+ PTS GKTLVAEI+ +
Sbjct: 311 YGLPNKIRDLLREFRGITEMYDWQKECL-SLPAIVERKNLIYALPTSGGKTLVAEIIMFR 369
Query: 153 TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGMQNVHVAI 209
VL R + V+ I+P+VS+ +EK+ L ++ VE + G + P + + +
Sbjct: 370 EVLLRNRSVMFIVPYVSLAQEKLAALSPFAVATQFLVEEYSGGKGMIPPRKRRRKQSIFV 429
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLI 269
CTIEKA +++ L++ ++G + +DELH++G+ NRG LE+L+TK++ + + I
Sbjct: 430 CTIEKALVLLDSLIEADRANEIGLICIDELHMIGEPNRGVNLEVLITKVQAIQAG----I 485
Query: 270 QVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYD-KNGKYILE-----A 323
Q+IGMSAT+ NL +A +++A++F FRP+ L+E+ + + K+G LE
Sbjct: 486 QIIGMSATIGNLAEIAKFMSADIFSQDFRPVELKEFVKCGSDMLEIKHGARTLEEAFVNK 545
Query: 324 KSSNYGVSCNDS------VLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCE 377
++ NY S D+ ++ + +ETI LIFC TK RCE L L +
Sbjct: 546 RTVNYKYSDTDTRIDPDHIIGLVMETIPND-PCLIFCPTKRRCEQLCSFLIE---HLPDR 601
Query: 378 GSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEG 437
+++ R L ++ L+N +L G+ YHH+GLT DER +IE
Sbjct: 602 VADYRAPERKTL--------IDLLENDG-STATLLPAAFRLGIAYHHSGLTFDERKLIED 652
Query: 438 AFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTK- 496
AF++ + +++ TSTL++GVNLPA++VIIRSP + + + YKQM GRAGR G +
Sbjct: 653 AFRAKVLSLIICTSTLAAGVNLPAKRVIIRSPYIATEFLTLSRYKQMVGRAGRAGFGNEG 712
Query: 497 GESILICSEAEKKIGFNLMMGDLDPVKSCIETKE--KYMRAILEIIASNISCSKQELLLY 554
GESILIC++ + + NL+ +D S + IL I I ++ ++L +
Sbjct: 713 GESILICAQKDIALVCNLLCSPMDEANSSLHADNFIHLKNLILSAIGLGICSTRNDVLKF 772
Query: 555 TDCTLLSAQKEILSQNL 571
TLL+ Q E L NL
Sbjct: 773 VAKTLLAIQTERLGVNL 789
Score = 45.2 bits (102), Expect = 0.014
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 7/203 (3%)
Query: 602 LGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLN 661
LGKA + + + EL++ + L + +LHL++++ D ++
Sbjct: 874 LGKASIRAGFHMERATRAYDELKRVGERLYVNDELHLLWVIVMEDGGEIRPKED--DFIS 931
Query: 662 LWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVH 721
+ L+ ++ + + + I L + LD +N+ +RF+ L + +L N +
Sbjct: 932 FFNKLSPEETRIAKRFFISDYTISMILS----RRLDKIDMNLLRRFFRTLIVYNLWNLIP 987
Query: 722 LSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQL-GWKSMEILISQFQDRLHFGIQXX 780
EVA +F G +Q L + A + FC+QL + + + L+ + RL
Sbjct: 988 PQEVAVRFTVDAGSVQTLMTNAAATASSLQRFCEQLPEFWAFDSLLKRMVQRLAHCCTAE 1047
Query: 781 XXXXXXXXXXNGMRARTLFDAGF 803
RAR L+ AG+
Sbjct: 1048 LIPLMELPAVKIGRARQLYRAGY 1070
>UniRef50_Q5TN58 Cluster: ENSANGP00000029591; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000029591 - Anopheles gambiae
str. PEST
Length = 787
Score = 277 bits (679), Expect = 2e-72
Identities = 179/526 (34%), Positives = 295/526 (56%), Gaps = 49/526 (9%)
Query: 94 WGLPIEISKKYEE-RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK 152
+GLP + + + RGI +++DWQ CL + + NL+Y+ PTS GKTLVAEIL ++
Sbjct: 8 FGLPNTVRRILRDFRGIDDLYDWQRECLA-LPAIQERRNLIYALPTSGGKTLVAEILMLR 66
Query: 153 TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS---PAGGMQNVHVAI 209
++ R + VI I+P+VS+ +EKM L +E + G + P + + +
Sbjct: 67 EIICRLRNVIFIVPYVSLAQEKMIALSPFALELQFLLEEYSGGKGQCPPRKRRKKNTIFV 126
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLI 269
CTIEKA +++ L++ G ++G +V+DELH++G+Q RG LE+++TK++ + + I
Sbjct: 127 CTIEKALLLLDSLVEVGRANEIGLIVIDELHMIGEQRRGACLEMMITKVQVLRAG----I 182
Query: 270 QVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSN-- 327
Q++GMSAT+ NL +A ++ A+++ FRP+ L+E+ + Y K + S+
Sbjct: 183 QIVGMSATIGNLTEVARFMLADVYSRDFRPVELKEFVKCGDDLYAVRSKGQADGGSAENV 242
Query: 328 YG-------VSCN--------DSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFC 372
+G C+ D V+++ LE I E S L+FC TK++CESL LL++
Sbjct: 243 FGEKRALEFADCSEELRRLDTDHVVRLILEVIPES-SCLVFCPTKSKCESLCALLANH-- 299
Query: 373 KIGCEGSEFGMILRSQLNSEHILEALEQLKNS---PVGLDQILQKTISFGVGYHHAGLTL 429
L ++L +EH E EQ+ S + +L + GV YHHAGLT
Sbjct: 300 ------------LPARL-AEHRAEEKEQIIRSLKEDGSIAPVLPQAFRVGVAYHHAGLTQ 346
Query: 430 DERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAG 489
DER IE A+++G + ++V TSTL++GVNLPA++VIIRSP +++ YKQM GRAG
Sbjct: 347 DERRTIEDAYRAGILSLIVCTSTLAAGVNLPAKRVIIRSPYIGNSFLSLSRYKQMVGRAG 406
Query: 490 RMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEK-YMRA-ILEIIASNISCS 547
R G GESILIC++ + ++ +D +S + ++ Y ++ IL I ++ S
Sbjct: 407 RAGFGETGESILICAQRDIPQVCEMLCAPMDIAESALIADDRAYFKSLILSAIGLDLCES 466
Query: 548 KQELLLYTDCTLLSAQKEILSQNL--ILEDTLKELENYELIRIQNN 591
+ L CTLL+ Q E S +L + ++T+ +L I+ +++
Sbjct: 467 RDALQALVRCTLLAQQAERRSIDLAAVTDETIVQLYQGNAIKARHD 512
Score = 46.4 bits (105), Expect = 0.006
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 14/207 (6%)
Query: 602 LGKACLSSSMAPNDGLTLFCELQKA--RQCLVLETDL-HLIYLVTPYSVSSQWGNIDWLH 658
LGKA + + + + E++ R C++ E DL HLI L V Q D++
Sbjct: 551 LGKAAIRAGFNMEKAVRFYDEMKVLGERLCVLDEYDLLHLILLEDGREV--QLKPDDFIV 608
Query: 659 LLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVN 718
L+N LT K+ E G+ I K L + + ++ RF L + +L
Sbjct: 609 LVN---QLTNEQLKIAERYGINNGLIAKIL---TRRVASGDMVSKMMRFVRVLIVHELWK 662
Query: 719 EVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLG--WKSMEILISQFQDRLHFG 776
+ L+EVA+++ G LQ L ++ A + C+++ W +L + H+
Sbjct: 663 QTPLAEVASRYHVNAGSLQTLMTSTAGTAFSLLRMCEEIPELWAFKHLLTGMTERLTHYC 722
Query: 777 IQXXXXXXXXXXXXNGMRARTLFDAGF 803
G RAR LF AG+
Sbjct: 723 KLELLPLLTLPSVKLG-RARQLFRAGY 748
>UniRef50_Q9VSE2 Cluster: CG7972-PA; n=2; Sophophora|Rep: CG7972-PA
- Drosophila melanogaster (Fruit fly)
Length = 1051
Score = 275 bits (674), Expect = 7e-72
Identities = 184/549 (33%), Positives = 301/549 (54%), Gaps = 38/549 (6%)
Query: 62 NNSLLNKTAEGKLTASKEVRNTQKIQS--KKLKDWGLPIEISKKY-EERGITEMFDWQLA 118
N SLL+ + +N Q I K + +GLP ++ K E +GI +++WQ
Sbjct: 211 NQSLLDPVNWETQAFADFEKNNQDIDKFPSKGEFYGLPDKVKKMILEHKGINSLYEWQDE 270
Query: 119 CLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYL 178
CL N + NL+Y+ PTS GKTLVAEIL ++ +L R++ V+ ILP+VSIV+EK+ +
Sbjct: 271 CL-NLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAM 329
Query: 179 QNILSSSGIRVEGFM---GSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVV 235
VE + G P + + I +IEK +++ L+D ++G VV
Sbjct: 330 SPFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVV 389
Query: 236 VDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFIT 295
VDELHL+G++ RG LE LTK+ ++ + IQ++GMSAT+ NL ++++LNA+++
Sbjct: 390 VDELHLIGEKGRGATLEAFLTKVMFLNAN----IQIVGMSATIGNLSEISSFLNADVYTR 445
Query: 296 TFRPIPLEEY--CLVENKYYDKNGKYILE----AKSSNYGVS------CNDSVLKICLET 343
FRP+ L+EY C + + G+ + E ++S Y S D + + E
Sbjct: 446 GFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAGLISEC 505
Query: 344 IKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKN 403
E C L+FC ++ CE++A LLS K +F RS+ +++AL+++
Sbjct: 506 APEHCC-LVFCPSRKNCENVALLLSRIVPK-----HKFFEHRRSE--KLDLMDALDKMCG 557
Query: 404 SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK 463
L +L KT+ +G+ YHH+GLT DER IE A++ G + V+ TSTL++GVNLPA++
Sbjct: 558 I---LSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKR 614
Query: 464 VIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVK 523
VIIR+P ++ + + YKQM GRAGR G GESILI + + ++ +D
Sbjct: 615 VIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKAL 674
Query: 524 SCIETKEK--YMRAILEIIASNISCSKQELLLYTDCTLLSAQKEIL--SQNLILEDTLKE 579
S ++ E IL ++ N++ +++L + TLLS Q + L + N I+ L+E
Sbjct: 675 SSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLLSVQAKSLEVAVNEIVLRILRE 734
Query: 580 LENYELIRI 588
+ +++++
Sbjct: 735 MFKNKVLQL 743
Score = 57.2 bits (132), Expect = 3e-06
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 600 TALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNI---DW 656
T +G+A + + + EL++A+Q L+L LHL+YLV ++ + + + D
Sbjct: 786 TNIGRAAFKAGIDYKRANAIHKELKQAQQQLILTNYLHLLYLVVCFNSNERGDELFPADA 845
Query: 657 LHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDL 716
L ++ SL + + + +G E+ + + +++ S +LN R Y L L D+
Sbjct: 846 SILFGVYTSLPLDSQAMFKQLGFTEAHAARLFKTQSVQGPLSLQLN---RLYKVLILADI 902
Query: 717 VNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQL 757
+N + + VA+K+ RG LQ L S A + C++L
Sbjct: 903 LNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEEL 943
>UniRef50_Q57YX8 Cluster: DNA polymerase theta (Helicase domain
only), putative; n=2; Trypanosoma|Rep: DNA polymerase
theta (Helicase domain only), putative - Trypanosoma
brucei
Length = 1057
Score = 274 bits (673), Expect = 9e-72
Identities = 166/451 (36%), Positives = 256/451 (56%), Gaps = 19/451 (4%)
Query: 94 WGLPIEISKKYE-ERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK 152
+ LP+ + Y RGI ++++WQ L + +LVYS PTS GKTLVAEI ++
Sbjct: 248 YDLPVSVKDFYATRRGIKKLYNWQHEVLMRDDIRAG-GSLVYSLPTSGGKTLVAEISLLR 306
Query: 153 TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTI 212
++ R + + +LPFVS+ EK + + G V+G ++ + V +CTI
Sbjct: 307 CLINRGQSCLFVLPFVSLAEEKTDAMIPLGDVLGFTVDGHYSTRGRFPLPVSKAVFVCTI 366
Query: 213 EKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVI 272
EKANS++N +L+ I +G +VVDELH+LG+ +RG LELLLTK+ + K +Q+I
Sbjct: 367 EKANSLVNHMLEENTIGRIGTIVVDELHMLGETSRGATLELLLTKLLCLRHK----VQII 422
Query: 273 GMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSC 332
GMSAT+PNL +A WL A +I +RP+PL +Y +V + + +G+ + + + G +
Sbjct: 423 GMSATIPNLPDIARWLRASCYIGNYRPVPLRQYAVVGGEVLE-DGREVCRSLVAA-GHTS 480
Query: 333 NDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLS-STFCKIGCEGSEFGMILRSQLNS 391
S L + L T +G SVL+FC ++ + S A+L++ S ++ EG +R +S
Sbjct: 481 ESSQL-VFLTTEVKGASVLVFCASRQQTVSTARLIARSRKEEVDKEGG-----VRYNASS 534
Query: 392 EHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATS 451
++ L L + L L + + +GV +HH GL +ER +IE AF+ +I VL TS
Sbjct: 535 LALVADLRALDSEESSL---LSQLVPYGVAFHHGGLVAEERTLIETAFRRRSIGVLCCTS 591
Query: 452 TLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIG 511
TL++GVNLPAR+VI ++P + Y QM GRAGR G D GES L S ++ G
Sbjct: 592 TLAAGVNLPARRVIFKTPFVAVDFLTKSRYLQMCGRAGRAGLDEFGESFLFLSRKDRNRG 651
Query: 512 FNLMMGDLDP-VKSCIETKEKYMRAILEIIA 541
LM +++ V +E K RA+LE +A
Sbjct: 652 CELMQQEVEACVSQLLEEKSTVERALLEFVA 682
Score = 114 bits (275), Expect = 1e-23
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 5/208 (2%)
Query: 599 ATALGKACLSSSMAPNDGLTLFCELQKARQC-LVLETDLHLIYLVTPYSVSSQWGNIDWL 657
++ G + S D L + EL+K +Q L+L DLH+ Y VTP ++DW
Sbjct: 785 SSPFGSCSVRSCFGVEDALIVRLELEKLQQSGLILADDLHMCYFVTPLRDPI---DVDWS 841
Query: 658 HLLNLWESLTKAMKKVGELVGVQESFIIKCLRGL-NMKHLDSNKLNIHKRFYTALALQDL 716
++ L + +++ ++GV E ++ + GL + + +RFY ALAL DL
Sbjct: 842 IYRDILSQLNETRQRIASMIGVDEFYVNQRAMGLGDAGGNGGGRAFATRRFYAALALADL 901
Query: 717 VNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFG 776
+NEV + EV +++C RG LQ L +++ F+ +T+FC+ + W S+E +++ F RL FG
Sbjct: 902 LNEVPIGEVEQRYRCNRGQLQNLLRSASMFSSSITSFCRAMEWYSLEAVLASFVKRLGFG 961
Query: 777 IQXXXXXXXXXXXXNGMRARTLFDAGFE 804
++ RAR L+ AGF+
Sbjct: 962 VKPDIIPLMEIKGVQPGRARALWRAGFK 989
>UniRef50_A6SHS0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 762
Score = 264 bits (646), Expect = 2e-68
Identities = 152/459 (33%), Positives = 252/459 (54%), Gaps = 12/459 (2%)
Query: 396 EALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSS 455
+ L L+++ GLDQ+L+KT+ GV +HHAGLT +ERD++ A+ G ++V+VAT +L++
Sbjct: 289 DLLNDLRDTSSGLDQVLEKTVLMGVAFHHAGLTTEERDLVAAAYDEGVLKVMVATCSLAA 348
Query: 456 GVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLM 515
G+NLPAR+VI+ + +QM GRAGR G+D GE+ L C +++ + LM
Sbjct: 349 GINLPARRVILHGARMGSDLVGPSMLRQMRGRAGRKGKDEIGETYLCCQKSDLEAVAELM 408
Query: 516 MGDLDPVKSC-IETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILE 574
++ V+SC + K RA+LE+IA+ ++ S + + Y TLL + ++E
Sbjct: 409 EAEIPSVESCLVPGKRGIKRALLEVIATKLATSSESIDDYVKKTLLCHTIDQEELKSMVE 468
Query: 575 DTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLET 634
TLK+L EL+ ++S Y AT LG+A ++SS+AP DGL + EL+++ + VL+
Sbjct: 469 ITLKDLLESELVEQTESYS---YEATRLGQAVVASSLAPEDGLFVHKELRRSLEAFVLDC 525
Query: 635 DLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMK 694
++H++Y TP V + G+I+W + L ++ +V VG++ S I K +G +M+
Sbjct: 526 EMHVLYTFTP--VQAMQGSINWQIFRREVDMLDESNLRVLGFVGLKPSLINKMAQGGSMR 583
Query: 695 HLDSNKL---NIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVT 751
+++ I+KRFYTAL L+DL NE+ + VA K+ RG +Q L Q FA +
Sbjct: 584 ESTPDEIEITRIYKRFYTALQLRDLCNEMPVHAVARKYDLPRGTIQNLAQTCHGFAAGMI 643
Query: 752 AFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXX 811
FC+++ W ++ ++ F DRL G + AR +D G++
Sbjct: 644 KFCEKMDWGALAAVLDHFSDRLKAGAKSDLLALAEITFIKSRTARIFWDNGYKTVGAIAG 703
Query: 812 XXXXXXENVLLKSVPFESAKERENDEKGDIK---KRTKI 847
+LL + P + +++EK K K TKI
Sbjct: 704 ADLKELIPILLMAQPKKLRLASDDEEKYHAKLCAKATKI 742
Score = 141 bits (342), Expect = 1e-31
Identities = 76/212 (35%), Positives = 125/212 (58%), Gaps = 27/212 (12%)
Query: 96 LPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL 155
LP ++ + + GI ++ WQ CL + L NLVY+APT GK+LVA++L +K V+
Sbjct: 69 LPNQLVENFAALGIKSIYSWQSECLLRSGALARQRNLVYTAPTGGGKSLVADVLMLKNVI 128
Query: 156 ER-QKKVIIILPFVSIVREKMFYLQNILSS----------------------SGIRVEGF 192
+ +KK +++LP+V++V+EK+ +L+ I+ + IRV GF
Sbjct: 129 QNPEKKALLVLPYVALVQEKLRWLRRIVQGISKETSARESKWPSMWRNRGDENSIRVTGF 188
Query: 193 MGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILE 252
G + +A+CTIEKANS++N +D +I +LG V++DE+H + D++RGYILE
Sbjct: 189 YGGSKSNATWAEMDIAVCTIEKANSLVNAAIDECSIGNLGVVIMDEIHFINDESRGYILE 248
Query: 253 LLLTKIKYVTSKSDLLIQVIGMSATLPNLETL 284
L+ TK+ + +Q++GMSATL L ++
Sbjct: 249 LMATKLLSLEQG----VQIVGMSATLDVLPSM 276
>UniRef50_Q7S0U4 Cluster: Putative uncharacterized protein
NCU07411.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU07411.1 - Neurospora crassa
Length = 1131
Score = 249 bits (609), Expect = 5e-64
Identities = 159/532 (29%), Positives = 271/532 (50%), Gaps = 24/532 (4%)
Query: 334 DSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEH 393
++V+ + ET + G VL+F ++ CES A L+S E ++R E
Sbjct: 457 NAVVALANETARAGYGVLVFSSSRAGCESDAVLISRVLPSF----QEADPLIR-----ER 507
Query: 394 ILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTL 453
L+ L L++S GLD L++TI GV +HHAGLT +ER++I A+ +G ++V VAT++L
Sbjct: 508 RLDLLNDLRSSSTGLDPKLEQTIPCGVAFHHAGLTTEERELIANAYDAGTLKVCVATASL 567
Query: 454 SSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFN 513
++G+NLPAR+VI+ + +QM GRAGR G+D GE+ L C + + +
Sbjct: 568 AAGINLPARRVILHGARMGIDLVGPAMLRQMRGRAGRKGKDEVGETYLCCRRNDLEAVVD 627
Query: 514 LMMGDLDPVKSCIETKEKYM-RAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNL- 571
LM DL + SC+ + E+ + RA+LE+IA ++ S++ L Y T+L+ ++ + +
Sbjct: 628 LMHADLPQITSCLVSDERRIRRALLEVIAIKLATSREALDEYVGRTMLACEQRLAEKETD 687
Query: 572 --------ILEDTLKELE--NYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFC 621
+E L++L+ + + + Y T LG A ++SS+ P DG+ +
Sbjct: 688 EWEDQIRGYIEIGLEKLKEMGFITVTVDERFETASYSTTKLGGAIVASSLDPEDGVFIHK 747
Query: 622 ELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQE 681
EL++A + V++ ++H++Y TP S +++W N E L ++ +V +G++
Sbjct: 748 ELERALKGFVMDGEMHVLYNFTPVSGLGNGTSVNWKVFWNEMEKLDESGLRVMSFLGLKP 807
Query: 682 SFIIKCLRGLNMKHL---DSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQG 738
+ + L+G +K + + + RFY AL L+DL NEV + VA K+ RG +Q
Sbjct: 808 VVLNRMLQGGILKETTDEEKDTARRYHRFYLALQLRDLCNEVPIHRVAQKYDVPRGTVQT 867
Query: 739 LQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTL 798
L Q FA + FC+ +GW +M + F DRL G + AR
Sbjct: 868 LAQTCQGFAAGMIKFCEAMGWGAMAAALDHFADRLKAGARADLLSLSKITFVKSRTARVF 927
Query: 799 FDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERENDEKGDIKKRTKIKNI 850
+D GF+ VL+++ P + E ++++K K K K I
Sbjct: 928 WDNGFKTVAVIANADPKELVPVLMQAQPNKVRLEVKDEQKYLDKLLAKAKII 979
Score = 160 bits (388), Expect = 3e-37
Identities = 98/287 (34%), Positives = 155/287 (54%), Gaps = 34/287 (11%)
Query: 57 VNTASNNSLLNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQ 116
V TA+ + ++ ++ + S + + S + LP ++ + GI ++ WQ
Sbjct: 113 VATAAKGGIPSEYSQRRALPSTPTSTSDPLLSLSHPVYKLPKQLVANFASLGIKTIYPWQ 172
Query: 117 LACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLER---QKKVIIILPFVSIVRE 173
CL +L NLVYSAPT GK+LVA++L +K VL+ + K I++LP+V++V+E
Sbjct: 173 KQCLLGPGLLSGDKNLVYSAPTGGGKSLVADLLMLKRVLDDPAGEAKAILVLPYVALVQE 232
Query: 174 KMFYLQNILSS---SG------------------------IRVEGFMGSQSPAGGMQNVH 206
K+ +L+N++S SG IRV GF G +
Sbjct: 233 KVRWLRNVVSGISRSGDLGQKQPHLEGKQQLWARRPDKDTIRVVGFFGGSKMRATWADFD 292
Query: 207 VAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSD 266
VA+CT+EKANS+IN + + +I L AVV+DE H++ D RGY+LEL+ TK+ + D
Sbjct: 293 VAVCTMEKANSLINAAITDCSISKLRAVVLDECHMIDDGYRGYLLELMTTKLLCL----D 348
Query: 267 LLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYY 313
+Q+I MSATL N+ L WL + T +RP+P+EE+ + + K Y
Sbjct: 349 QQVQIIAMSATLTNIRLLKDWLGGHSYETHYRPVPIEEHLVYDGKIY 395
>UniRef50_A2DLF9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 857
Score = 232 bits (568), Expect = 5e-59
Identities = 209/725 (28%), Positives = 349/725 (48%), Gaps = 80/725 (11%)
Query: 109 ITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPF 167
ITE+ WQ L + + +V S PTS GKTL+AEI + + + +VI LPF
Sbjct: 64 ITELRPWQKGLLATDDWKQNKSCIVVS-PTSGGKTLIAEIAIAQLIDDDPNARVIYALPF 122
Query: 168 VSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGN 227
V++ EK + S +R F Q+ G ++ +AICT EKA+S+ N+ + G
Sbjct: 123 VALAMEKYIEFKQRFSMFDVRP--FF--QNLGGDFKSGSIAICTYEKAHSLFNQAVKFGY 178
Query: 228 IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATW 287
+ + +++DE+H++GD NRG ++E LL K++ + K ++I +SAT+ ++ +
Sbjct: 179 FDQIKLIIIDEIHMIGDDNRGIVVESLLMKLRMLPKKP----RIICLSATVNKIDAIKIS 234
Query: 288 LNAELFITTF--RPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETI- 344
+ + + T R L Y E K + + ++N S ND +L + I
Sbjct: 235 MVIDGYFTICEQRTQELRYYISFEGKLFRIKDSEASKIITNNSIKSDNDKILPLIKPLIA 294
Query: 345 -KEGCSVLIFCMTKNRCESLAQLLSSTFCKI--GCEGSEFGMILRSQLNSEHILEALE-- 399
K G S LIF T+N +A +S K GCE ++E I+E E
Sbjct: 295 RKNGQSCLIFVNTRNESNRIALFISQNIDKEIPGCE--------EISKDNEKIIEGREKL 346
Query: 400 --QLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGV 457
+L GLD+ L I G+GYHHAGL L+ER I+E KSG I ++VAT+TLS+G+
Sbjct: 347 ISELAKCSTGLDKCLGGCIMKGIGYHHAGLLLEERKIVEKGIKSGLINIIVATTTLSAGI 406
Query: 458 NLPA-RKVIIRSPV----FQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGF 512
N+ + +VI+ +P +K I+ +QM+GR+GR T G+ I+I A F
Sbjct: 407 NISSVSRVIVYNPYRKSDNKKTIISPSLLQQMAGRSGRTD-TTSGDVIVI---ARSSYEF 462
Query: 513 NLMMGDLDPVKSCIETK-------EKYMRAILEIIASNISCSKQELLLYTDC-TLLSAQK 564
N ++ + CI + Y+ L + SN + E L + ++S +
Sbjct: 463 NEIIKLYNTPIPCITSNIVKGGDMNSYLLQTLALRLSNGPFTMNEFLKNSFAFQIVSTNE 522
Query: 565 EILSQNLILEDTLKELENYELIRI--QNNHSE---NHYVATALGKACL------------ 607
LS+ L +D+ K+ + I + +NN E N + A+ CL
Sbjct: 523 YNLSKILNQKDSKKKNPKSDKIDVLNENNSDEEKNNVERSKAIVNDCLKYLVDNNLVEDK 582
Query: 608 ------------SSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNID 655
SS+++ ++GL L ++K + L L LHL+YL P +Q G
Sbjct: 583 TYEATKLGKAITSSNLSISEGLRLNEAVKKIMKMLCLSDSLHLLYLCIP----NQTGIYL 638
Query: 656 WLHLLNLWESLTKAMKKVGELV--GVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALAL 713
N WE++ V L+ QE ++ N K L +++++ +R Y L
Sbjct: 639 PPFTDNTWETIFLKHSHVINLITDKTQEDLRRMIIQSFNGKKLSQSEMSLFERIYAGCVL 698
Query: 714 QDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRL 773
+ L++E + E+ + F+ RG +Q LQ +SG++AG T FC+++ + + + +F+ RL
Sbjct: 699 EKLIDEHSIVEIESMFKIDRGTIQILQTSSGSYAGQATKFCEEMDYSILAAALVRFRKRL 758
Query: 774 HFGIQ 778
FG++
Sbjct: 759 EFGVK 763
>UniRef50_A5X572 Cluster: DNA polymerase nu; n=2; Clupeocephala|Rep:
DNA polymerase nu - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 1146
Score = 225 bits (550), Expect = 7e-57
Identities = 146/436 (33%), Positives = 235/436 (53%), Gaps = 31/436 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E K++ +L+ E + + VDKE + + + L+++A + G F +SS +
Sbjct: 707 IEQKMIPVLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQKFLVSSSAQLRL 766
Query: 1137 VLG--------IYNGRKTSTRKSVLSSHNT---------PISSIVMYWRKLNAILTKILY 1179
+L N + T K S+ T P+ I++ +R+++ I T +
Sbjct: 767 ILFEKLRLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQIHKIKTTFVD 826
Query: 1180 PLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEV 1238
+ +C + I S+++ T T +GR++ PN Q +P+ + + + + + ++
Sbjct: 827 GIL--SC--TRKTFISSTWNQTSTVSGRLSAKHPNFQALPK-LPLQISKKQYIHGKASDI 881
Query: 1239 IEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKS-DVDVFKSIAASWSD 1297
+ + R +F G +SAD+CQ+E+RLL H S D L RI +S + D F +AA W
Sbjct: 882 VTVHPRAMFIPREGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKG 941
Query: 1298 VPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTK 1357
V E V + R++AK++ Y ++YG G + LS L VS EAS F DSF +TY + F +
Sbjct: 942 VSEDRVSLEDREQAKRIVYSVVYGAGRERLSGILGVSAEEASRFQDSFLKTYREVPAFIQ 1001
Query: 1358 SVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSI 1417
I+ C+ GFV ++ GRRR+LP I S S RN AERQAVN ++QGSAAD+AK AM I
Sbjct: 1002 HTIQHCQSHGFVRSIMGRRRFLPHIHSADWSLRNQAERQAVNFVLQGSAADLAKLAMIRI 1061
Query: 1418 EDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED-------TVELKVPLPV 1470
++S + RL+ Q+HDEL++EV + +F +L+K ME V L VPL V
Sbjct: 1062 CSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAALVKKTMESLQHIEYLNVNLSVPLKV 1121
Query: 1471 KLKCGYTWGALDEVAL 1486
L G +WG++ E+ L
Sbjct: 1122 LLSTGRSWGSMYEMNL 1137
>UniRef50_A2D9Y6 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Trichomonas vaginalis G3|Rep: Type
III restriction enzyme, res subunit family protein -
Trichomonas vaginalis G3
Length = 787
Score = 224 bits (548), Expect = 1e-56
Identities = 200/704 (28%), Positives = 353/704 (50%), Gaps = 63/704 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRV 189
N+V PT+ GKT+ AE+ + + + K++ +PFVS+ EK Y Q +V
Sbjct: 61 NIVVKVPTAGGKTVAAEVAIAQQLEADITSKILYCVPFVSLAAEK--YTQFSQRFPKYQV 118
Query: 190 EGFMGSQSPAGGMQNV-HVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
+ F Q+ G V +A+CT E+A+S+IN + + ++ +++DE+H++ + RG
Sbjct: 119 KAFY--QNVGGSEFQVGSIAVCTFERAHSLINAAIRSDYLDSFKLIIIDEIHMISYEGRG 176
Query: 249 YILELLLTKIKYVTSKSDLLIQVIGMSATLPN--LETLATWLNAELFITTFRPIPLEEYC 306
+E ++ K+ T ++IG+SAT+ N E W++A +F + R L +Y
Sbjct: 177 SNVEAIIAKLLLATKPP----RIIGLSATISNEDCEIYKKWMDAFIFRSENRSSTLNQYL 232
Query: 307 L-VENKYYD-KNGKYILEAK--SSNYGVSCN-DSVLKICLETIK--EGCSVLIFCMTKNR 359
L V+ + NGK+ K G + N L + + I E +VL F T+
Sbjct: 233 LSVQGELIPIVNGKFQKAQKVYPLKEGSTSNVKRALPLIEDVINFAENANVLYFVNTRRE 292
Query: 360 CESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFG 419
S A+ L+ KI + +++ + +R ++ A Q +S L + G
Sbjct: 293 AASAAKFLAKHI-KIETK-NDYIIKMREEIAVNLTRFAQGQTDSSD------LAPLVLKG 344
Query: 420 VGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQK---QPI 476
V YHHAGL ++ER ++E F++GAI ++VAT+TLS+G+N ++I ++++ +P
Sbjct: 345 VSYHHAGLLVEERKLVEEGFRNGAISIVVATTTLSAGINFINVALVIIDTIYRRNYQKPP 404
Query: 477 NILS---YKQMSGRAGRMGRDTKGESILICSEA---EKKIGFNLMMGDLDPVKSCIETKE 530
I++ Y QM+GRAGR + G ++ I S + E++I L ++ ++S +
Sbjct: 405 TIMTPSLYTQMAGRAGRT-EENPGMAVTIESGSFANEREIIQELANRKIESIQSHLLEAS 463
Query: 531 KYMRAILEIIASNISCSKQELLLYTDCTLLS---AQK---EILSQNLILEDTLKELENYE 584
++ R L++I SK + LY + L S A+K E SQN I+++++K L+N
Sbjct: 464 EFDRYFLQVIC----FSKLDKNLYKNFPLFSFYAAKKGMTEEESQN-IIDESIKRLKNLS 518
Query: 585 LIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTP 644
L+ N +E+ T LG+ ++M+ ++GL ++ LQ+A L L +HL++L TP
Sbjct: 519 LL----NENED---PTDLGRGIALANMSIDEGLEVYKFLQRANTSLDLIDKIHLMFLCTP 571
Query: 645 ----YSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNK 700
+SV ++ N W + ++ + K+G E II +RG N+ +LD N
Sbjct: 572 AQNDFSV-PEYSNQVWEDIFKRHSTVIET--KLGVRKDEFEKKIIMSIRGNNVMNLD-NI 627
Query: 701 LNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWK 760
I +R + + L DL +E+ + ++ K+ ARG Q LQ+ + FA V C G
Sbjct: 628 DTIFQRLFASSILLDLTDEIGIKQIEEKYGVARGHCQSLQRNAHAFAVQVMKICNSCGMP 687
Query: 761 SMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFE 804
+E I+QF+ + +G + AR LF++G E
Sbjct: 688 MLEAAINQFRKTILYGAKSELLSLMRIPGIPRFEARLLFNSGME 731
>UniRef50_Q6X9R1 Cluster: DNA polymerase I; n=1; Dictyoglomus
thermophilum|Rep: DNA polymerase I - Dictyoglomus
thermophilum
Length = 856
Score = 223 bits (546), Expect = 2e-56
Identities = 148/412 (35%), Positives = 229/412 (55%), Gaps = 31/412 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
N+EI ++ +L + E GI VDKE + +L + + L+++ +++ G FN NS K ++
Sbjct: 457 NIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRFNLNSPKQLS 516
Query: 1136 KVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+VL + +G+K ST SVL + + PI ++ +R+L + K Y
Sbjct: 517 EVLFERLKLPSGKKGKTGYSTSSSVLQNLINAHPIVRKILQYRELYKL--KSTYVDAIPN 574
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ + R+ + ++ T T TGRI+ EPNLQN+P S+E + R
Sbjct: 575 LVNPQTGRVHTKFNPTGTATGRISSSEPNLQNIP--------------IKSEEGRKI--R 618
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F + G +VS DY Q+E+R++ H S++ L + D+ + A+ VPE EVD
Sbjct: 619 RAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVD 678
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D LR +AK + +GIIYG+ + LS+ + ++ EA F+DS+ + YP +++F I E +
Sbjct: 679 DLLRSRAKAVNFGIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAR 738
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+ +V+TL GR+RY+P+I S RN ER A+N IQG+AADI K AM I I +
Sbjct: 739 EKLYVKTLFGRKRYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEIENK 798
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLM-KSVMEDTVELKVPLPVKLKCG 1475
N K R++LQ+HDELI EV E + F LM K ME VEL VPL V++ G
Sbjct: 799 NLKSRILLQIHDELILEVPE-EEMEFTPLMAKEKMEKVVELSVPLVVEISVG 849
>UniRef50_A3DL12 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Staphylothermus marinus F1|Rep: DEAD/DEAH box
helicase domain protein - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 716
Score = 223 bits (546), Expect = 2e-56
Identities = 171/564 (30%), Positives = 295/564 (52%), Gaps = 46/564 (8%)
Query: 89 KKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEI 148
+KL ++G P + + RGIT + Q + + K LF+ NL+ SAPT++GKTL+ E+
Sbjct: 4 EKLLEYGFPRTYIELLKNRGITRLNPVQKSAV--KKGLFNSMNLLVSAPTASGKTLIGEM 61
Query: 149 LTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHV 207
+ + + + ++P ++ EK + L G+R+ G +SPA + ++
Sbjct: 62 ALVHNTINKDMIGLYLVPLRALASEKYDEFKE-LEKLGLRIGITTGDYESPAEYLGRYNI 120
Query: 208 AICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDL 267
I T E+ +S++ L + +G VV+DE H++GD RG ILE+++ K+ ++S++
Sbjct: 121 VIATYERFDSLLR--LKPKWLNRIGVVVIDEFHMIGDPERGPILEMIIAKM--LSSQA-- 174
Query: 268 LIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYIL-EAKSS 326
Q+IG+SAT+ N + LA W+NAEL +RP+ L VE Y KN + + +
Sbjct: 175 --QIIGLSATIGNPDVLAGWINAELVDDPYRPVEL-----VEGVYDKKNHVIVFRDGRRE 227
Query: 327 NYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILR 386
+ L I L++I G VL+F + + E A LS E + +
Sbjct: 228 KIIHRIGGAALNISLQSISSGIQVLVFVHNRRKAEEWAFKLS-----------EHMGLFK 276
Query: 387 SQLNSEHILEALEQLKNSPVGLD-QILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIR 445
++ + E LE+LK SP L+ + L+ IS GV +HHAGL+ R ++E F+ IR
Sbjct: 277 HLIDKNKLSEILEELKESPSRLEREKLEYLISRGVAFHHAGLSSVARRVVEKGFRERIIR 336
Query: 446 VLVATSTLSSGVNLPARKVII---RSPVFQKQPINI--LSYKQMSGRAGRMGRDTKGESI 500
+ AT TL++GVNLPAR+V++ R ++Q +NI YKQM+GRAGR D GE+I
Sbjct: 337 AVFATPTLAAGVNLPARRVLVSIKRYSPMRRQTVNIAVYEYKQMAGRAGRPTYDPYGEAI 396
Query: 501 LICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLL 560
+ + + + G + G L+P+ S + + +L +IAS + + +E++ TL
Sbjct: 397 IYDASSLSE-GLKFIHGKLEPITSKLNNERSLRIHVLALIASKDANTLEEIINVFKNTLF 455
Query: 561 SAQ-KEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTL 619
A+ +++ ++ L +L + +I N N ++AT LG L +S+ D L++
Sbjct: 456 VAEYRDLAYLKSTIDIVLDDLLEWGMIESIGN---NKFIATKLG---LITSITYLDPLSV 509
Query: 620 FCELQKARQCLVLETDLHLIYLVT 643
L+ + + DL+ + L+T
Sbjct: 510 NRYLENIKDNV---GDLYYLMLIT 530
>UniRef50_Q2RHE8 Cluster: DNA polymerase I; n=3; Clostridia|Rep: DNA
polymerase I - Moorella thermoacetica (strain ATCC 39073)
Length = 885
Score = 218 bits (532), Expect = 1e-54
Identities = 142/438 (32%), Positives = 234/438 (53%), Gaps = 33/438 (7%)
Query: 1057 EMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQK 1116
E+ S+ Q + Y+ VE+ + ++L E +G+ V+ E + + ++ L +
Sbjct: 465 ELASKLQVAGMENLYRR---VELPLTRVLGAMESYGVAVNMETLDLMGIELEGGLAALTE 521
Query: 1117 KAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLS--SHNTPISSIVMY 1166
+++ G FN NS K +A +L G+ ++T ST +VL + PI++ ++
Sbjct: 522 AIYELAGEEFNLNSPKQLAVILFEKLGLPPVKRTKTGFSTDAAVLEELACRHPIAAKLVE 581
Query: 1167 WRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPL 1225
+R+L + K Y K + + +S++ T T TGR++ EPNLQN+P +
Sbjct: 582 YRQLAKL--KSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGR 639
Query: 1226 RYLTFDNTTSDEVIEFNCRNVFRA-APGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSD 1284
R R F PG ++++ADY Q+E+R+L H S D A+ +
Sbjct: 640 RL----------------RKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRG 683
Query: 1285 VDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDS 1344
D+ AA VP GEV +R+ AK + +GI+YG+ + LS+ L +S EA +++
Sbjct: 684 EDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIER 743
Query: 1345 FERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQG 1404
+ R Y ++ + + ++ +++G+V TL GRRRYLPD+ S + R+ ER A+NT IQG
Sbjct: 744 YFRRYRGVKAYLEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQG 803
Query: 1405 SAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVEL 1464
+AADI K AM I + + P R+ILQ+HDELI++V + + L+K ME T+EL
Sbjct: 804 TAADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGLVKDTMEHTLEL 863
Query: 1465 KVPLPVKLKCGYTWGALD 1482
+VPL V LK G W L+
Sbjct: 864 QVPLQVDLKAGPNWYDLE 881
>UniRef50_A0FLQ6 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1540
Score = 218 bits (532), Expect = 1e-54
Identities = 140/443 (31%), Positives = 238/443 (53%), Gaps = 21/443 (4%)
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLI 269
CTIEKA S+ NR L E++G +VVDE+H++ D +RG +E +L+K+ + +
Sbjct: 1 CTIEKAASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKV 60
Query: 270 QVIGMSATLPNLETLATWLN-AELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNY 328
++IGMSAT+P L + WL+ A++F FRPI L+ + ++ ++ +L S
Sbjct: 61 RIIGMSATIPELYRIGKWLDGAKVFEARFRPIVLQNHIVIGSELRKSGDNKVLREFSE-- 118
Query: 329 GVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ 388
D ++ + E+ + L+ +K E A ++S F +I S IL+ +
Sbjct: 119 -----DPLILLTEESFRRNSQTLVMISSKLDAEKTALNIASRFHEINKTDSSLLEILKER 173
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
N +L L+ + D+ + T+++GV YHHAGLT++ER+ IE F+ I +LV
Sbjct: 174 ANG--LLFIKHGLERNGCK-DRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILV 230
Query: 449 ATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEK 508
ATSTL+SGVNLPA +V+I++ + L+Y+QM GRAGR G T+GE+ L+ + ++
Sbjct: 231 ATSTLASGVNLPAERVLIKAQPRGPSALTSLNYRQMVGRAGRTGHATRGETYLLIKKCDR 290
Query: 509 KIGFNLMMGDLDP---VKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKE 565
++ +D + + R ILE I + ++ ++ + ++ C LL
Sbjct: 291 DAVLKIIETPIDQGVLTRKRDAERTNLSRFILEGICTGLTTTRSQ--IHDLCKLLLFN-- 346
Query: 566 ILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQK 625
S+NL L D E+ I + +++ T LG+A ++SS+ P L +F +L
Sbjct: 347 --SENLQLSDIAIEMLLRNSF-ISQDENDDQLSPTQLGRAAIASSLPPEASLAIFEDLNS 403
Query: 626 ARQCLVLETDLHLIYLVTPYSVS 648
A + + L+T+LH++YLV Y S
Sbjct: 404 ASRAIALDTELHMLYLVYFYKNS 426
Score = 175 bits (425), Expect = 1e-41
Identities = 131/425 (30%), Positives = 214/425 (50%), Gaps = 51/425 (12%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
++ +E++ + + N GIV D+ L + + +R + L++ +++ FN +SS +
Sbjct: 1149 SLQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNE 1208
Query: 1134 VAKVLGIYNG-------------RKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKIL 1178
VA VL G R T K +L NT PI ++ +R++ LT+ L
Sbjct: 1209 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL 1268
Query: 1179 YPLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEV 1238
PL + RI + T TGRI PNLQNVP+ S SD +
Sbjct: 1269 MPLAKFI------GRIHCWFEMCTSTGRILTSVPNLQNVPKRIS------------SDGM 1310
Query: 1239 IEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDV 1298
+ R +F A ++++ ADY QLE+R+L H S DS L ++ SD D+F+ ++ W+
Sbjct: 1311 ---SARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEELSIQWN-F 1366
Query: 1299 PEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKS 1358
P R KQLCYG+IYGMG K+LS+ +S +A + +F +P +R +
Sbjct: 1367 P--------RDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINE 1418
Query: 1359 VIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIE 1418
E+ ++ + T+ GRR + S I R ER AVN IQGSA++I K+A+ IE
Sbjct: 1419 TKEKVCKEEPISTIIGRRTIIK--ASGIGEERARIERVAVNYTIQGSASEIFKTAIVDIE 1476
Query: 1419 DGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE--LKVPLPVKLKCGY 1476
I F +++L +HDE++ E E + + +++ M++ + L+VP+ V +K G
Sbjct: 1477 SKIKEFG--AQIVLTIHDEVLVECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGR 1534
Query: 1477 TWGAL 1481
+W L
Sbjct: 1535 SWADL 1539
Score = 128 bits (308), Expect = 2e-27
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 642 VTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKL 701
VTP +VS W DW HL +++ L K++ +LVGV E FI+ L+G L L
Sbjct: 478 VTPINVSV-WQECDWHHLFSIFSKLPSDHKRIAKLVGVSEKFILDQLQGRRNDKL----L 532
Query: 702 NIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKS 761
IH RF++ALAL DL++E+ + EV++K++ RG LQ LQ S T+A M+ AFC +LGW
Sbjct: 533 QIHIRFFSALALFDLISEMSIYEVSHKYRIPRGCLQTLQSQSATYAAMIVAFCLRLGWTY 592
Query: 762 MEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGFEXXXXXXXXXXXXXENVL 821
++ L+ F RL FG++ +G RAR L + G + L
Sbjct: 593 LKALLDGFATRLLFGVRSELSELVAIEGIDGQRARILHERGVTCLSHLSACDSSKLAHFL 652
Query: 822 LKSVPFESAKERENDEKGD 840
+VP+ S+ ND G+
Sbjct: 653 TLAVPYSSS--NSNDGLGE 669
>UniRef50_A1VG95 Cluster: DNA polymerase I; n=2; Desulfovibrio
vulgaris subsp. vulgaris|Rep: DNA polymerase I -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 1015
Score = 217 bits (531), Expect = 1e-54
Identities = 142/420 (33%), Positives = 217/420 (51%), Gaps = 35/420 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L++ E GI VD+ + L +V+ D + ++ +K G FN S++ + +
Sbjct: 613 LELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQLGE 672
Query: 1137 VL---------GIYNGRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L G G + +T + L S P+ +++ +RKL + + L PL +
Sbjct: 673 LLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPK-- 730
Query: 1186 CIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ + RI S+++ T TGR++ PNLQN+P + R R
Sbjct: 731 -LVDDAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRM----------------R 773
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
+ F AA G+++VSADY Q+E+R+L H S+D L + D+ + A D +V
Sbjct: 774 SCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVT 833
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D R+ AK + +G+IYGMG + L Q L ++ EA F++ + +R F +V +
Sbjct: 834 PDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAR 893
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
QG V TL+GRRR LP++ S T R+ A RQA+NT+IQGSAADI K AM + D
Sbjct: 894 EQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLH 953
Query: 1425 NPKPRLILQMHDELIYEVHETNK----SRFISLMKSVMEDTVELKVPLPVKLKCGYTWGA 1480
K RLILQ+HDEL+ EV E N R LM V V L VPL V G WG+
Sbjct: 954 GLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWGS 1013
>UniRef50_UPI00015BB23F Cluster: DEAD/DEAH box helicase domain
protein; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DEAD/DEAH box helicase domain protein - Ignicoccus
hospitalis KIN4/I
Length = 698
Score = 217 bits (530), Expect = 2e-54
Identities = 202/715 (28%), Positives = 337/715 (47%), Gaps = 73/715 (10%)
Query: 95 GLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
G + + + EERGI +F Q L K L + NL+ SAPT +GKTLVAE + IK
Sbjct: 8 GARLGLKEWLEERGIRRLFPVQELAL--QKGLTEFKNLLVSAPTGSGKTLVAE-MAIKNA 64
Query: 155 LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIE 213
L+ K + + P S+ EK L+ I S + + +G +P G +V VA T E
Sbjct: 65 LDNGYKAVYLTPLRSLAFEKYASLKKIFKDSKVALS--VGDYHAPEVGEADVLVA--TYE 120
Query: 214 KANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIG 273
+ +S++ ++ ++++G VVVDE+H +GD+ RG LE+++T++K + Q++
Sbjct: 121 RMDSLLRH--NSPWLKEVGTVVVDEVHYVGDEERGPTLEVVVTRLKLMGK------QIVA 172
Query: 274 MSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCN 333
+SAT+ N E LA+WL+AEL +RP+ LEE + + Y + + E + +
Sbjct: 173 LSATVGNPEDLASWLDAELVTHDWRPVKLEEGVMDPSSY-----EVLFEDRVEEVKEVLS 227
Query: 334 DSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEH 393
D L L ++EG L F T+ R E+ A+ +S K E+ +R ++ E
Sbjct: 228 DPGLDAALHYMREG-QALYFASTRKRAENAAKKISK-LLKPDKVTKEWAERVRIEVEGE- 284
Query: 394 ILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTL 453
L ++L K + G +HHAGLT + R ++E AF+SGAI+ + AT TL
Sbjct: 285 --------------LGEVLAKMVERGAAFHHAGLTNEARLLVEEAFRSGAIKFVAATPTL 330
Query: 454 SSGVNLPARKVII----RSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC--SEAE 507
++GVNLPAR V+I R + PI++ YKQM+GRAGR G D KG S+L+
Sbjct: 331 AAGVNLPARAVVIERYTRYTDEGEAPISVSEYKQMAGRAGRPGLDVKGTSVLVARPKAPP 390
Query: 508 KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEIL 567
+++ ++G + V+S + + R++L +IAS S+ EL+ + + TL +
Sbjct: 391 EEVYERYVLGQPEDVRSALTSARALRRSLLGLIASKAVNSEAELVEFIEETLFGVTEGAA 450
Query: 568 SQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR 627
+ ++D + LE ++ AT LG + P + L++ +
Sbjct: 451 N---AIDDARRSLE-----FLKGAGLVEGVKATPLGTVVAKQYVDPLGAKVVLGALKRRK 502
Query: 628 QCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKC 687
LHL+ VTP + + LW A ++ EL+ + ++
Sbjct: 503 GKTTALGYLHLV-AVTP---DMPKRGLRSSEVRELWR---VAEERFDELLIRDDEYV--- 552
Query: 688 LRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFA 747
+S L+ K ALAL+ V E +A K+ G L+ L +
Sbjct: 553 --------SESTALSALK---VALALESWVKEEPEEVIAKKYGFYPGDLRVLSDTAAWLV 601
Query: 748 GMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAG 802
+ K +G +++ + RL +G+ +RAR L++AG
Sbjct: 602 HAYSEIAKFVGLYKHSEALAELELRLKYGVSEELVELVQIPYIGRVRARALWNAG 656
>UniRef50_Q8TL39 Cluster: Putative ski2-type helicase; n=4;
Euryarchaeota|Rep: Putative ski2-type helicase -
Methanosarcina acetivorans
Length = 730
Score = 215 bits (525), Expect = 8e-54
Identities = 157/558 (28%), Positives = 281/558 (50%), Gaps = 40/558 (7%)
Query: 90 KLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEIL 149
K++ LP E+ + YE GI E++ Q + K L + NL+ + PT++GKTL+AE+
Sbjct: 2 KIESLDLPDEVKRFYENSGIPELYPPQAEAV--EKGLLEGKNLLAAIPTASGKTLLAELA 59
Query: 150 TIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAG-GMQNVHVA 208
+K+VL K + I+ P ++ EK Q+ S GIRV G G+ +
Sbjct: 60 MLKSVLAGGKALYIV-PLRALASEKFRRFQDF-SELGIRVGISTGDYDRRDEGLGINDII 117
Query: 209 ICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL 268
+ T EK +S++ + ++++ VVVDE+HL+ +RG LE+ L K++ K +
Sbjct: 118 VATSEKTDSLLRN--ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAKLR----KMNPF 171
Query: 269 IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNY 328
Q++ +SAT+ N + LA WL+AEL ++ +RP L E + ++ K+ + ++E +
Sbjct: 172 CQILALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQPT--- 228
Query: 329 GVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ 388
D + + L+T++EG L+F ++ C A+ +S K L ++
Sbjct: 229 ----KDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKATSAVKK----------TLSAE 274
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
+ A E L+NS +L + G +HHAGLT R+++E F+ G ++++
Sbjct: 275 DKEKLAGIADEILENSETDTASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLIS 334
Query: 449 ATSTLSSGVNLPARKVIIR-----SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC 503
+T TL++G+NLPAR+VIIR S QPI +L YKQM+GRAGR D GE++L+
Sbjct: 335 STPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
Query: 504 SEAEKKIGF--NLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLS 561
E+ + + + + S + T+ +L I++ + +K+EL+ + + T +
Sbjct: 395 KSYEELLFLFEKYIEAGAEDIWSKLGTENALRTHVLSTISNGFARTKEELMDFLEATFFA 454
Query: 562 AQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFC 621
Q ++++++ L L ++ + ++T GK + P +
Sbjct: 455 YQYSNFGLSVVVDECLNFLRQEGML----EQDSDALISTMFGKLVSRLYIDPLSAALIAK 510
Query: 622 ELQKARQCLVLETDLHLI 639
L++A L T LHL+
Sbjct: 511 GLREAGTLTEL-TLLHLV 527
>UniRef50_A5CXW1 Cluster: DNA polymerase I; n=2; sulfur-oxidizing
symbionts|Rep: DNA polymerase I - Vesicomyosocius
okutanii subsp. Calyptogena okutanii (strain HA)
Length = 909
Score = 215 bits (524), Expect = 1e-53
Identities = 136/462 (29%), Positives = 238/462 (51%), Gaps = 35/462 (7%)
Query: 1031 IKVNNRQTKLKNLTLAQESCVKAWAIEMISEK--QQNALYESYQNAINVEIKVLKILSNC 1088
+ N ++ L + + + + M+ E+ Q L + YQN +E+ ++K+L
Sbjct: 465 VTFNQVNVEIALLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQN---LELPLIKVLLCM 521
Query: 1089 ELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL------GIYN 1142
E +G+ +D ++S D+ + ++ + F++ FN S K + ++L G+
Sbjct: 522 ERNGVELDVNILSTQQLDITQQMEDIKNQVFELADNVFNLESPKQIQRILFESKGLGLIP 581
Query: 1143 GRKT-----STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSS 1197
RKT ST + L + P+ +++ +R L + + L L K + + R+ +S
Sbjct: 582 LRKTPKGVPSTNEEALKLLDHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTH--RLHTS 639
Query: 1198 YS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMV 1256
Y+ T TGR++ PNLQN+P F S R F G+V++
Sbjct: 640 YNQVVTATGRLSSSNPNLQNIP----------IFSEQGSC------IRGAFITGKGNVII 683
Query: 1257 SADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCY 1316
SADY Q+E+R++T S+D L +D DV A++ ++P EV + R++AK + +
Sbjct: 684 SADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRAKAINF 743
Query: 1317 GIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRR 1376
G+IYGM L++ + VS +A +MD++ YP++ + ++ E K QG+VET+ GRR
Sbjct: 744 GLIYGMSAYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAKVQGYVETIMGRR 803
Query: 1377 RYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHD 1436
YLP I + + A R A+N +QGS+ADI K +M + I NP R+I+Q+HD
Sbjct: 804 LYLPQINAKNKMLQQHALRTAINAPMQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHD 863
Query: 1437 ELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
EL++EV + F ++++M +T L +PL V + G +W
Sbjct: 864 ELVFEVSASKADEFSRKIQALMSNTYLLDIPLKVDVGIGNSW 905
>UniRef50_Q8GDN6 Cluster: DNA polymerase I; n=1; Heliobacillus
mobilis|Rep: DNA polymerase I - Heliobacillus mobilis
Length = 932
Score = 214 bits (523), Expect = 1e-53
Identities = 146/418 (34%), Positives = 225/418 (53%), Gaps = 36/418 (8%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
+VE+ + IL + E GI V+ +++ + ++ LQ + ++ G FN NS++
Sbjct: 526 DVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETFNINSTQQFG 585
Query: 1136 KVL------GIYNGRKT--STRKSVLS--SHNTPISSIVMYWR---KLNAILTKILYPLT 1182
K+L + KT ST VL S PI V+ +R KL + + L PL
Sbjct: 586 KILFEKLGLPVIKRTKTGYSTDVEVLEELSDRHPIVPKVLEFRQLMKLKSTYVEGLLPLI 645
Query: 1183 EKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
+ EG RI +S++ + T TGR++ EPNLQN+P R++
Sbjct: 646 DGP----EG-RIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQG-RHI------------- 686
Query: 1242 NCRNVFRAA-PGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPE 1300
R F A PG +++ADY Q+E+R+L H S+D + + D+ A+ DVP
Sbjct: 687 --RKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPM 744
Query: 1301 GEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVI 1360
G V ++R++AK + +GI+YG+ + LS+ L V+ EA +++ + R Y +R + +I
Sbjct: 745 GNVTREMRRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRRYHGVRGYIDRII 804
Query: 1361 EECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDG 1420
E ++QGFV TL GRRR LPD+ R+N ER A+NT IQG+AADI K+AM I
Sbjct: 805 AEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAADIIKAAMVKIPKA 864
Query: 1421 INSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ K R++LQ+HDELI+EV E + L+K +ME T+E+ VPL V +K G W
Sbjct: 865 LKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIEISVPLTVDVKKGANW 922
>UniRef50_Q6X9R3 Cluster: DNA polymerase I; n=2; Clostridium|Rep: DNA
polymerase I - Clostridium stercorarium
Length = 898
Score = 214 bits (523), Expect = 1e-53
Identities = 150/452 (33%), Positives = 233/452 (51%), Gaps = 40/452 (8%)
Query: 1045 LAQESCVKAWAIEMISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDK----E 1098
L S AI I Q+ L E+ Q + ++E+ ++ +L++ E HG VD E
Sbjct: 465 LKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVDAAKLHE 524
Query: 1099 LVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNT 1158
LL+ ++D L+K + + G FN NS+K + +L + K KS + ++T
Sbjct: 525 YGEVLLSRIKD----LEKVIYMLAGEEFNINSTKQLGTIL--FEKLKLPVVKSTKTGYST 578
Query: 1159 PISSIVMYWRKLNAILTKILY-PLTEKACIYSEG---------DRIMSSYS-TFTCTGRI 1207
+ + + K + I I Y LT+ Y+EG +I SS++ T T TGRI
Sbjct: 579 DVEVLEELYYKHDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQTVTATGRI 638
Query: 1208 TMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVF-RAAPGSVMVSADYCQLEMR 1266
+ EPNLQN IP+R+ E+ R F ++ +V V ADY Q+E+R
Sbjct: 639 SSTEPNLQN------IPVRH-----EMGREI-----RKAFIPSSENAVFVDADYSQIELR 682
Query: 1267 LLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKT 1326
+L H + D AL D+ + A+ DV +V +LR+KAK + +GI+YG+ +
Sbjct: 683 VLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISDYG 742
Query: 1327 LSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHI 1386
L++ L ++ EA ++D + YP ++ + ++ + QG+VETL RRRYLP++ S
Sbjct: 743 LARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFHRRRYLPELASKN 802
Query: 1387 TSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETN 1446
+R+ +R A+NT IQG+AADI K AM + + K RLILQ+HDEL+ E E
Sbjct: 803 FHQRSFGKRVAMNTPIQGTAADIIKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDE 862
Query: 1447 KSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
L+K ME+ VEL VPL V + G W
Sbjct: 863 LETVKELVKKCMEEAVELSVPLVVDVSIGKNW 894
>UniRef50_P43741 Cluster: DNA polymerase I; n=140; Bacteria|Rep: DNA
polymerase I - Haemophilus influenzae
Length = 930
Score = 214 bits (523), Expect = 1e-53
Identities = 143/429 (33%), Positives = 226/429 (52%), Gaps = 34/429 (7%)
Query: 1062 KQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKI 1121
+++ L E Y+ +E+ +L +LS E G+++D + + ++ L+K+A+ +
Sbjct: 520 QEEPTLVELYKT---MELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576
Query: 1122 CGYHFNFNSSKDVAKVL----GIYNGRKT-----STRKSVLS--SHNTPISSIVMYWRKL 1170
G FN S+K + ++L + +KT ST + VL S++ + I++ R L
Sbjct: 577 AGQPFNLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHELPKILVKHRGL 636
Query: 1171 NAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLT 1229
+ + K Y + S+ R+ +SY T TGR++ +PNLQN IP+R
Sbjct: 637 SKL--KSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQN------IPIR--- 685
Query: 1230 FDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFK 1289
N + R F A G +V+ADY Q+E+R++ H S D L D+ +
Sbjct: 686 --NEEGRHI-----RQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHR 738
Query: 1290 SIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTY 1349
S AA V EV + R+ AK + +G+IYGM LS+ L +S +A +MD + + Y
Sbjct: 739 STAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMDLYFQRY 798
Query: 1350 PAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADI 1409
P+++ F + E+ K QG+VETL GRR YLPDI S RR AER A+N +QG+AADI
Sbjct: 799 PSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADI 858
Query: 1410 AKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLP 1469
K AM +++ I +P +I+Q+HDEL++EV + F +K ME EL VPL
Sbjct: 859 IKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAELVVPLI 917
Query: 1470 VKLKCGYTW 1478
V++ G W
Sbjct: 918 VEVGVGQNW 926
>UniRef50_Q6F883 Cluster: DNA polymerase I, 3'--> 5' polymerase, 5'-->
3' and 3'--> 5' exonuclease; n=6; Bacteria|Rep: DNA
polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease - Acinetobacter sp. (strain ADP1)
Length = 920
Score = 214 bits (522), Expect = 2e-53
Identities = 138/444 (31%), Positives = 233/444 (52%), Gaps = 33/444 (7%)
Query: 1046 AQESCVKAWAIEMISEKQQNALYESYQNAI-NVEIKVLKILSNCELHGIVVDKELVSRLL 1104
A+++ V E++++K ++A +N + N+E+ V +IL+ E GI +D + +L
Sbjct: 495 AEDAHVTYRLYEVLAQKLKSA--PELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLS 552
Query: 1105 TDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT-----STRKSVLSS 1155
+ ++ L+ +A ++ G FN +S K V ++L G+ G+KT ST +S+L
Sbjct: 553 VEFTETILGLENQAIELAGESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEK 612
Query: 1156 HNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNL 1214
PI+ +++ R L+ + L E++ ++E R+ +SY T TGR++ +PNL
Sbjct: 613 VEHPIAEVILEHRTLSKLKNTYTDRLVEQS--HNETHRVHTSYHQALTATGRLSSSDPNL 670
Query: 1215 QNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSED 1274
QN+P I + R F A G ++++ADY Q+E+RL+ HFS+D
Sbjct: 671 QNIPIRGEIGRQI----------------RKAFIAPEGRILLAADYSQIELRLMAHFSQD 714
Query: 1275 SALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVS 1334
AL + DV + AA ++P EV +D R++AK + +G++YGM L + L +
Sbjct: 715 EALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFT 774
Query: 1335 EMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAE 1394
E+ ++ + YP I + + + QGFVET+ GRR Y PDI + R AE
Sbjct: 775 REESQNYIKQYFHRYPGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAE 834
Query: 1395 RQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLM 1454
R A+N +QGSAADI K AM ++ + + +L+LQ+HDEL++EV +
Sbjct: 835 RAAINAPLQGSAADIIKLAMIEVDKMLP--KDQAKLLLQVHDELVFEVDADLADELAPKL 892
Query: 1455 KSVMEDTVELKVPLPVKLKCGYTW 1478
M+ V + VPL V++ G W
Sbjct: 893 AETMQSVVNISVPLLVEVGQGLNW 916
>UniRef50_A0LIP7 Cluster: DNA polymerase I; n=1; Syntrophobacter
fumaroxidans MPOB|Rep: DNA polymerase I - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 902
Score = 214 bits (522), Expect = 2e-53
Identities = 150/446 (33%), Positives = 227/446 (50%), Gaps = 31/446 (6%)
Query: 1046 AQESCVKAWAIEMISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDKELVSRL 1103
A SC A A + + L ES + +E+ ++ +L+ E GI D E + L
Sbjct: 470 AAYSCAAADAARRMHPVLKRKLDESRLTELFEKIELPLITVLARMEFRGITADAEKLESL 529
Query: 1104 LTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLS- 1154
D + + D + + FN S K +A +L G+ +KT ST +VL
Sbjct: 530 SIDFQKALDRTADTIYDLAKEKFNIQSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEE 589
Query: 1155 -SHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEP 1212
+ PI+ V+ +R L + K Y I RI +SY+ T TGR++ +P
Sbjct: 590 LALEHPIADHVLVFRTLAKL--KGTYADALGKLINPRTGRIHTSYNQTVAATGRLSSSDP 647
Query: 1213 NLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFS 1272
NLQN IP+R T I R+ F APG +++SADY Q+E+R+L H S
Sbjct: 648 NLQN------IPIR------TEEGRKI----RSAFIPAPGWLLLSADYSQIELRILAHCS 691
Query: 1273 EDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLD 1332
+D L + D D+ + AA V EV ++R++AK + +GIIYGMG L+Q L
Sbjct: 692 KDEHLLEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQRLR 751
Query: 1333 VSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNT 1392
+S A +D + + Y +R F + IE +R G+ ETL GRRR++P++ S + R
Sbjct: 752 ISTKTARTAIDKYFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQL 811
Query: 1393 AERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFIS 1452
ER A+NT +QG+AAD+ K AM ED +N + ++LQ+HDEL++E +
Sbjct: 812 GERLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQE 871
Query: 1453 LMKSVMEDTVELKVPLPVKLKCGYTW 1478
L++ VMED +L VPL V+L G W
Sbjct: 872 LVRRVMEDVWKLDVPLKVELGWGDNW 897
>UniRef50_Q6HSF9 Cluster: DNA polymerase I; n=28; Bacillales|Rep: DNA
polymerase I - Bacillus anthracis
Length = 891
Score = 213 bits (519), Expect = 4e-53
Identities = 132/432 (30%), Positives = 233/432 (53%), Gaps = 33/432 (7%)
Query: 1059 ISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKA 1118
+ E ++N YE + +E+ + ++L++ E+ G+ VD E + + ++ ++++
Sbjct: 477 VEELEKNEQYELFTE---LELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533
Query: 1119 FKICGYHFNFNSSKDVAKVL------GIYNGRKT--STRKSVLSS---HNTPISSIVMYW 1167
+K+ G FN NS K + +L + KT ST VL H+ I +I+ Y
Sbjct: 534 YKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY- 592
Query: 1168 RKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLR 1226
R+L + + + L + ++ + +I + ++ T TGR++ +PNLQN+P R
Sbjct: 593 RQLGKLNSTYIEGLLK--VVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEG-R 649
Query: 1227 YLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVD 1286
+ S+E G +M +ADY Q+E+R+L H + D L + D+D
Sbjct: 650 KIRQAFVPSEE--------------GWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMD 695
Query: 1287 VFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFE 1346
+ A V + EV ++R++AK + +GI+YG+ + LSQ+L ++ A+ F++ +
Sbjct: 696 IHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYL 755
Query: 1347 RTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSA 1406
++P ++ + ++++ K++G+V TL RRRY+P+ITS + R+ AER A+NT IQG+A
Sbjct: 756 ESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQGTA 815
Query: 1407 ADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKV 1466
ADI K AM + D + + RL+LQ+HDELI+E + + L+ VME +EL V
Sbjct: 816 ADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELAV 875
Query: 1467 PLPVKLKCGYTW 1478
PL V G TW
Sbjct: 876 PLKVDYSYGPTW 887
>UniRef50_Q7MTY3 Cluster: DNA polymerase type I; n=2;
Porphyromonadaceae|Rep: DNA polymerase type I -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 926
Score = 212 bits (518), Expect = 5e-53
Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 42/466 (9%)
Query: 1032 KVNNRQTKLKNLT-LAQESCVKAWAI-----EMISEKQQNALYESYQNAINVEIKVLKIL 1085
+V+ RQ L+NL A E W + M+SE +L+ES +E+ ++ +L
Sbjct: 480 EVHIRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFES------IEMPLVPVL 533
Query: 1086 SNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLG-----I 1140
+N E G+ +D E++ R + + + ++ + +++ G+ FN NS V VL
Sbjct: 534 ANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQIT 593
Query: 1141 YNGRKT-----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDR 1193
+KT ST + +L PI +++ +R + +L+ + L E Y +G
Sbjct: 594 EKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYRGIKKLLSTYVEALPEMR--YPDGKL 651
Query: 1194 IMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGS 1253
S T TGR++ PNLQN+P + +DE I
Sbjct: 652 HTSFNQTVATTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECI-------------- 697
Query: 1254 VMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQ 1313
+SADY Q+E+RL+ H SED +L + D+ ++ A+ +P EV DD+R++AK
Sbjct: 698 -FMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKT 756
Query: 1314 LCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLS 1373
+GIIYG+ LS+ L++S EA ++ + +YP ++ + I E KRQG+V TL
Sbjct: 757 ANFGIIYGISAFGLSERLNISRTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLF 816
Query: 1374 GRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQ 1433
GR+R+L DI S R AER A+N IQGSAAD+ K AM I + I + R+ILQ
Sbjct: 817 GRKRFLRDINSANAVVRGYAERNAINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQ 876
Query: 1434 MHDELIYEVHETNKSRFISLMKSVMEDTV-ELKVPLPVKLKCGYTW 1478
+HDEL + V + L++S ME + L+VPL ++ G W
Sbjct: 877 VHDELNFNVLRPEAAEVRELVRSCMEGVMPSLRVPLIAEIGEGANW 922
>UniRef50_Q1FMB9 Cluster: DNA polymerase I; n=1; Clostridium
phytofermentans ISDg|Rep: DNA polymerase I - Clostridium
phytofermentans ISDg
Length = 994
Score = 212 bits (518), Expect = 5e-53
Identities = 136/414 (32%), Positives = 213/414 (51%), Gaps = 32/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ L + E GI VD + + S L+K+ F++ G FN NS K + +
Sbjct: 597 IEMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGVEFNINSPKQLGE 656
Query: 1137 VL----GIYNGRKT----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
+L G+ G+KT ST VL S P+ +++ +R+L TK+ +
Sbjct: 657 ILFQRLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQL----TKLKSTYADGLV 712
Query: 1187 IYSEGD-RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
Y EGD RI +++ T TGR++ EPNLQN+P + + R
Sbjct: 713 SYVEGDGRIHGTFNQTIAATGRLSSTEPNLQNIPIRMELGRKI----------------R 756
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
VF G + + ADY Q+E+RLL H S D+ L + D+ + A+ P EV
Sbjct: 757 KVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFDEVT 816
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
R AK + +GI+YG+ + +L Q LD++ EA +++ + TYP ++ + +IEE K
Sbjct: 817 SAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYINKYFMTYPGVKTYLDGLIEEGK 876
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
G V+TL GR R +P++T+ +R+ ER A+N+ IQG+AADI K AM + +
Sbjct: 877 ETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPIQGTAADIMKLAMIHVNQVLKER 936
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
K RL+LQ+HDEL+ E HE+ +MK M+ L VPL V++ G W
Sbjct: 937 KLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAASLSVPLEVEVANGNNW 990
>UniRef50_Q8RBE6 Cluster: DNA polymerase I-3'-5' exonuclease and
polymerase domains; n=5; Thermoanaerobacteriaceae|Rep:
DNA polymerase I-3'-5' exonuclease and polymerase domains
- Thermoanaerobacter tengcongensis
Length = 871
Score = 212 bits (517), Expect = 7e-53
Identities = 138/420 (32%), Positives = 219/420 (52%), Gaps = 39/420 (9%)
Query: 1075 INVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDV 1134
+ +E+ ++++L + E+ G +D+ ++ L + + + K +K GY FN NS K +
Sbjct: 471 LEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQFNVNSPKQL 530
Query: 1135 AKVL------GIYNGRKT--STRKSVL---SSHNTPISSIVMYWR--KLNAILTKILYPL 1181
+ L + KT ST VL +++N +S I+ Y + KL + + PL
Sbjct: 531 GEFLFEKLNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPL 590
Query: 1182 TEKACIYSEGDRIMSSYSTFTC-TGRITMHEPNLQNVP--RTFSIPLRYLTFDNTTSDEV 1238
+ E DR+ S++ TGRI+ EPNLQN+P F +R F T D
Sbjct: 591 MD------ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRR-AFIPRTKDGY 643
Query: 1239 IEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDV 1298
I VSADY Q+E+R+L H SED L ++ D+ A+ V
Sbjct: 644 I----------------VSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKV 687
Query: 1299 PEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKS 1358
P V ++R+ AK + +GIIYG+ + L++ L +S EA ++D++ Y ++ + +
Sbjct: 688 PPQNVTPEMRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEK 747
Query: 1359 VIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIE 1418
VI K G+V T+ RRRY+P+I S ++R+ AER A+NT IQGSAADI K AM +
Sbjct: 748 VIRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVY 807
Query: 1419 DGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
N K RLILQ+HDEL+ + ++ ++K ME+ ++LKVPL V++ G W
Sbjct: 808 QEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIKLKVPLVVEIGVGPNW 867
>UniRef50_Q73M72 Cluster: DNA polymerase I; n=1; Treponema
denticola|Rep: DNA polymerase I - Treponema denticola
Length = 936
Score = 212 bits (517), Expect = 7e-53
Identities = 139/418 (33%), Positives = 225/418 (53%), Gaps = 36/418 (8%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ + K+L+ E+ GI + E ++ ++ + +K +++ G+ FN S K +
Sbjct: 538 DLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQ 597
Query: 1136 KVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWR---KLNAILTKILYPLT 1182
+VL + G+KT ST SVL + P+ + ++ +R KL + T L +T
Sbjct: 598 EVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKILDYRALAKLKSTYTDTLPKMT 657
Query: 1183 EKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
+K RI +S+ T T TGR++ +PNLQN IP+R +E +
Sbjct: 658 DK------NGRIHTSFIQTGTATGRLSSRDPNLQN------IPIR--------GNEGRKI 697
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
R F+A G V++SADY Q+E+ +L H S+D L + +DV A+ V
Sbjct: 698 --REAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIFAVDIK 755
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
+V D+R+ AK + +G++YGM L+ L + A F+ ++ TY + F +V +
Sbjct: 756 DVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMANVCQ 815
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
E +++G+VETL GRRRYLP I S + AER AVNT IQG+AADI K AM ++ +
Sbjct: 816 EAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKAL 875
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
++LQ+HDELI E E+ + + +SL+K ME ++L VPL V ++ G +WG
Sbjct: 876 KKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKMEGVIKLSVPLRVSIESGMSWG 933
>UniRef50_Q2LQV1 Cluster: DNA polymerase I; n=1; Syntrophus
aciditrophicus SB|Rep: DNA polymerase I - Syntrophus
aciditrophicus (strain SB)
Length = 901
Score = 212 bits (517), Expect = 7e-53
Identities = 136/451 (30%), Positives = 234/451 (51%), Gaps = 32/451 (7%)
Query: 1039 KLKNLTLAQESCVKAWAIEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKE 1098
+L++ + + A +I + ++ L E + + VE+ ++ +L+ E G+++D
Sbjct: 467 RLRDFACRRVEAIGELASTLIEKMEETGLRELFDS---VEMPLVAVLAAMEEKGVLLDLH 523
Query: 1099 LVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRK 1150
L+ + ++ + + K + + G FN S K + +L + G+KT ST
Sbjct: 524 LLKEMSQELGHLLSLSEAKIYALAGERFNIASPKQLQTILFEKLNLPKGKKTKGGYSTDV 583
Query: 1151 SVLSSH--NTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRI 1207
VLS+ N + + ++ +R + + + + L + I RI +SY+ T TGR+
Sbjct: 584 EVLSNLALNHELPAEILAYRSMAKLKSTYIDALP--SLINIRTGRIHTSYNQTVAATGRL 641
Query: 1208 TMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRL 1267
+ PNLQN IP+R L R F A PG +VSADY Q+E+R+
Sbjct: 642 SSSNPNLQN------IPIRTLEGKRI----------RQAFIAPPGWAIVSADYSQIELRV 685
Query: 1268 LTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTL 1327
L H SED L + D+ AA V ++ ++R++AK + +G++YGM L
Sbjct: 686 LAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGL 745
Query: 1328 SQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHIT 1387
S+ L + + +A ++D + + Y +++ + ++++ + +G+V TL RRRYLP+I S
Sbjct: 746 SRELGIPQKQAQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNP 805
Query: 1388 SRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNK 1447
+ R AER A+N IQG+AAD+ K AM I D I K + +Q+HDEL++EV + K
Sbjct: 806 AVRQLAERMAINAPIQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEK 865
Query: 1448 SRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
++L++ ME VELKVPL V + G W
Sbjct: 866 IALMNLVRQEMEGVVELKVPLKVDIASGRNW 896
>UniRef50_Q30VQ3 Cluster: DNA polymerase I; n=2;
Desulfovibrionaceae|Rep: DNA polymerase I - Desulfovibrio
desulfuricans (strain G20)
Length = 931
Score = 211 bits (516), Expect = 9e-53
Identities = 143/421 (33%), Positives = 219/421 (52%), Gaps = 39/421 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L++ EL GI +++ S L +V+ D L ++ + + G FN SS+ + +
Sbjct: 529 LEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQFNIRSSQQLGE 588
Query: 1137 VL----GIYNGRKT-----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L G+ G KT ST ++VL + P+ ++ +RKL + + L PL A
Sbjct: 589 LLFGTLGLKAGSKTKGGQASTSQAVLEKLAGKHPVIDTILEYRKLEKLRSTYLEPLPRLA 648
Query: 1186 CIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
E DRI ++++ T TGR++ +PNLQN+P + R R
Sbjct: 649 ---QENDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRM----------------R 689
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F AAPG+ +V+ADY Q+E+R+L H S D L + D+ A DV +V
Sbjct: 690 RCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVT 749
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D R+ AK + +G+IYGMG + L+Q L V+ EA F++ + ++ F +V + +
Sbjct: 750 PDQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAR 809
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAM--CSIEDGIN 1422
GFV TL+GRRR LP+I S R+ A RQA+NT++QGSAADI K AM + ++ +
Sbjct: 810 EHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIAMLKAAADETLQ 869
Query: 1423 SFNPKPRLILQMHDELIYE----VHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
N LILQ+HDEL+ E E R +M SV L VPL V G W
Sbjct: 870 QLN--AALILQVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNW 927
Query: 1479 G 1479
G
Sbjct: 928 G 928
>UniRef50_A0B7B5 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Methanosaeta thermophila PT|Rep: DEAD/DEAH box
helicase domain protein - Methanosaeta thermophila
(strain DSM 6194 / PT) (Methanothrixthermophila (strain
DSM 6194 / PT))
Length = 693
Score = 211 bits (516), Expect = 9e-53
Identities = 191/716 (26%), Positives = 339/716 (47%), Gaps = 78/716 (10%)
Query: 96 LPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL 155
LP + + YE GI E++ Q + + L D N++ S PT+AGKTL+AE+ ++ L
Sbjct: 11 LPESVIELYEALGIDELYPPQAEAI--ERGLLDGRNMIISVPTAAGKTLLAELAMLRGAL 68
Query: 156 ERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEK 214
K+ + I+P ++ EK F + S G+RV G + + + I T EK
Sbjct: 69 SG-KRSLYIVPLRALASEK-FESFSRFSKLGLRVGISTGDFEKRDERLGRNDIIIATSEK 126
Query: 215 ANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGM 274
A+S+I + +G +VVDE+HLL NRG LE+ +TK+ ++ + +QVIG+
Sbjct: 127 ADSLIRN--GASWVRRIGVLVVDEIHLLDSANRGPTLEMTMTKLMHLNPE----MQVIGL 180
Query: 275 SATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCND 334
SAT+ N +A W+ E+ + +RP+ L E L+E++ +G+ LE ++ D
Sbjct: 181 SATIANGREIADWIKGEIVSSDWRPVRLREGVLLEDRLVFPDGEIQLENRN-------RD 233
Query: 335 SVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHI 394
VL + L+T+ +G +LIF T+ ES+A+ +S + G
Sbjct: 234 PVLNLVLDTVDQGGQMLIFESTRRNAESMAKKVSGALQESG-----------------ET 276
Query: 395 LEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLS 454
+E E+L + L + G +HHAGL ++R +IE F+ ++V+ T TL+
Sbjct: 277 IELAERLSGEGKTAKK-LAMCLRHGAAFHHAGLLPEQRRLIELGFRQNVVKVIACTPTLA 335
Query: 455 SGVNLPARKVIIRS-----PVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC-SEAE- 507
+G+NLPAR+V+IRS +PI ++ Y+QM+GRAGR G D GES+++ SE+E
Sbjct: 336 AGLNLPARRVLIRSYKRYEAGLGTRPIPVMEYRQMAGRAGRPGLDPYGESLIMARSESEL 395
Query: 508 KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEIL 567
+K+ + +MG+ + + S + ++ +L IAS + S L T + Q++
Sbjct: 396 QKLMDHYVMGEPEDIWSKLASERALRTHVLATIASRFADSVDSLSRLMASTFYARQQD-- 453
Query: 568 SQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR 627
L +T+ + + L+R ++ + T LG + P + + E++ R
Sbjct: 454 --PSYLGETIASVLEF-LVR--SDMIDKDLTPTPLGALVSRLYIDPLSAMVMIQEIRGIR 508
Query: 628 QCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKC 687
+ VL T LH+I + + + +WL + +++ ++G
Sbjct: 509 RPTVL-TLLHVITMTPDMELLFVQQSDNWLE-----DFISEHSSELG------------- 549
Query: 688 LRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFA 747
N K+ D + + TA L D +NEVH + +++ + G L + + +
Sbjct: 550 ----NEKNFDW----LLREVKTASMLMDWINEVHEDRIEDRYSISPGDLVRIAETAEWLM 601
Query: 748 GMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGF 803
+ K + + L + R+H+G +RAR L+ AG+
Sbjct: 602 SALHRISKHMD-LGVTYLAERLALRIHYGAGDELLQLLELKGIGRVRARKLYQAGY 656
>UniRef50_Q892J4 Cluster: DNA polymerase I; n=14; Clostridia|Rep: DNA
polymerase I - Clostridium tetani
Length = 882
Score = 211 bits (515), Expect = 1e-52
Identities = 158/531 (29%), Positives = 264/531 (49%), Gaps = 49/531 (9%)
Query: 973 EDQADKTNEVKNSIKDKPLQLFKSPIKRCCETDSIQTVIKKIKVDMKKYSGMDLAQLTIK 1032
E+ DKT E+ +I +K S + + +KK+ V+ K + DL
Sbjct: 372 EENKDKTIEILKTIFEKEAVRVVSH-----DVKVLSMALKKLDVEFTK-ALFDLKIAAYL 425
Query: 1033 VNNRQTKLKNLTLAQESCVKAWAIEMISEKQQNALYESY-----QNAINVEIKVLK---- 1083
+++ ++ TL QE K + E ++ +L E + IN+E++ L
Sbjct: 426 IDSSKSDYDLSTLIQECLSKIVKDDEEREIRETSLLEKLCANLKEQIINLEMEKLYYEVE 485
Query: 1084 -----ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL 1138
+L+N EL G VD E++ + ++ + +QK+ +++ FN NS K + K+L
Sbjct: 486 LPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEFNVNSPKQLGKIL 545
Query: 1139 ------GIYNGRKT--STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKACIY 1188
+ KT ST VL PI S + Y+R+L + + + L +
Sbjct: 546 FEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYRQLTKLYSTYVEGLKN---VI 602
Query: 1189 SEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVF 1247
E RI SS++ T T TGR++ EPNLQN+P + + +V N N
Sbjct: 603 DEDGRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEM--------GREVRKVFVPNYEN-- 652
Query: 1248 RAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDL 1307
S+++SADY Q+E+R+L H ++D L K D+ A+ VP EV ++
Sbjct: 653 -----SIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNM 707
Query: 1308 RQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQG 1367
R AK + +GI+YG+G+ +L++ L +S EA ++D++ YP ++ + I++ KR
Sbjct: 708 RGNAKAVNFGIVYGIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDM 767
Query: 1368 FVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPK 1427
+V T+ RRR++P+I + + ER A+NT IQGSAADI K AM + + + + K
Sbjct: 768 YVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKERDLK 827
Query: 1428 PRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
++ILQ+HDELI V++ S++K ME+ + L VPL V + G W
Sbjct: 828 SKIILQVHDELILNVYKDELEEIKSIVKDSMENVLPLSVPLEVDINEGENW 878
>UniRef50_Q83AT5 Cluster: DNA polymerase I; n=4; Coxiella
burnetii|Rep: DNA polymerase I - Coxiella burnetii
Length = 895
Score = 210 bits (514), Expect = 2e-52
Identities = 134/414 (32%), Positives = 222/414 (53%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ IL E+ G++VD ++ ++ +L+++A+K+ G FN +S K +
Sbjct: 496 IEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQT 555
Query: 1137 VL------GIYN---GRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L I+ G + ST ++VL + + P+ +++ R L + T L +
Sbjct: 556 ILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQ- 614
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
++ RI +SY+ T T TGR++ + PNLQN IP+R T I R
Sbjct: 615 -VHPASRRIHTSYNQTVTSTGRLSSNNPNLQN------IPIR------TEEGRKI----R 657
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A PG MV+ADY Q+E+R++ H S+D +L + + D+ ++ AA V +V
Sbjct: 658 RAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVT 717
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+ R++AK + +G++YGM + L + L + A ++D + + YP + + + +
Sbjct: 718 PEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKEYIDIYFKRYPKVHEYMQKIRIVAF 777
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
QG+VETL GRR YLPDI + RR AER A+N +QG+AADI K AM + D +
Sbjct: 778 TQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAADIIKIAMIKVSDWLQKN 837
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ LI+Q+HDEL++EV E + + I +K ME+ V L VPL V + G W
Sbjct: 838 PVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAVALSVPLVVDVGVGGNW 891
>UniRef50_A2DKN3 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 848
Score = 210 bits (514), Expect = 2e-52
Identities = 192/741 (25%), Positives = 349/741 (47%), Gaps = 48/741 (6%)
Query: 90 KLKDWGLPIEISKKY----EERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLV 145
K+ + G+P + Y E IT++ DWQ L T N + PTS GKT+
Sbjct: 60 KMNELGIPAFLQHAYLTGKPEPKITQLRDWQ-ENLWKTPSWQAQMNTIVLVPTSGGKTVA 118
Query: 146 AEILTIKTVLERQK--KVIIILPFVSIVREKMFYLQNILSSSGIR--VEGFMGSQSPAGG 201
A+ L + VLE+ K+I LPFV++ EK + + +R + GS G
Sbjct: 119 AD-LAMAQVLEKDPTAKIIYALPFVALANEKYSEYEQRFFNFQVRPFYQNIGGSDFRRG- 176
Query: 202 MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYV 261
++A+CT EKA+ ++N + G + VV+DE+H++GD++RG +E L+ K+ +
Sbjct: 177 ----NIAVCTFEKAHFLLNSAITCGYANKIKLVVIDEIHMIGDESRGAAIEALIIKLNLL 232
Query: 262 TSKSDLLIQVIGMSATL--PNLETLATWLNAELFITTFRPIPLEEYCL-VENKYYDKNGK 318
+K +++ ++AT+ + +A W+N +I RP P+++ ++ + N
Sbjct: 233 EAKP----RIVTLTATVNEEDANRIAKWINGFAYIWKSRPAPIKQMVKKLDGRLCTINST 288
Query: 319 -YILEAKSSNYGVSCNDSVLKICLETIKEGC--SVLIFCMTKNRCESLAQLLSSTFCKIG 375
I+ D ++ + + + C ++L+F ++ ++ L+++
Sbjct: 289 GQIVPFTKLQSSPDDKDHLMPLIRTLLSKKCQSTILVFVNSRMDTIKISSLIANHMYDDT 348
Query: 376 CEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDII 435
+ S L L+ ++++ + +D I GV +HH G+ L++R +I
Sbjct: 349 IPLPKVPPPSDSLLKKR--LDLIKKMAANSGFIDDTTVTCIKNGVLFHHGGILLEDRKLI 406
Query: 436 EGAFKSGAIRVLVATSTLSSGVNL-PARKVIIRSPVFQ-----KQPINILSYKQMSGRAG 489
E A +S I VLVAT+TLS+GVN+ +VII + Q K+ I Y QM GRAG
Sbjct: 407 EEAARSKIINVLVATTTLSAGVNIHGVTRVIIHNIYRQTQDNRKKLIAPTQYTQMIGRAG 466
Query: 490 RMGRDTKGESILIC---SEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISC 546
R G+ GES +I S E L + +KS I E+ R L+ + +
Sbjct: 467 RSGQ--AGESFIIARSESPVEMNNILELSKNIIPDLKSSILEGEEADRYFLQCLTIRLLP 524
Query: 547 SKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHS-ENHYVATALGKA 605
S++ +++S N +E + + + R+QNN+ ++++ T G A
Sbjct: 525 PDGVRSFIEKSFSFSSRNDLISDNKTIESYCQPIYS----RLQNNNMIDSNHRTTKFGMA 580
Query: 606 CLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNI--DWLHLLNLW 663
SS++ +GL ++ L +A++ L +E ++HL+YL +S I D ++
Sbjct: 581 VAGSSLSIEEGLNIYSILNRAQKSLCIEDEVHLLYLCISSKTASSIRPISYDSPQWRKIF 640
Query: 664 ESLTKAMKKVGELVGVQESFI--IKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVH 721
E+ ++ V +L VQ + + + G N + D + K A+ LQDL+NE
Sbjct: 641 ENHLHVIQLVTQLSNVQIDHLPDLAHIYGGNGRVNDEIDHCLDK-VMVAVILQDLINERP 699
Query: 722 LSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXX 781
L +++ +++ G +Q +Q S ++AG + FC+ LG + +++F+ RL+F +
Sbjct: 700 LKDISYEYKVDLGTIQKVQMESASYAGQINRFCEILGNGVLAAALNKFRQRLNFAARTDI 759
Query: 782 XXXXXXXXXNGMRARTLFDAG 802
ARTL D G
Sbjct: 760 LSLMTIPSCPRDIARTLADRG 780
>UniRef50_Q7VRJ4 Cluster: DNA polymerase I; n=3;
Enterobacteriaceae|Rep: DNA polymerase I - Blochmannia
floridanus
Length = 943
Score = 209 bits (510), Expect = 5e-52
Identities = 136/414 (32%), Positives = 220/414 (53%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+EI ++ IL++ E +G+++DK L+ ++ + LQ +A+++ G FN +S K + +
Sbjct: 544 IEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAGTSFNLDSIKQLQE 603
Query: 1137 VLGIYNG----RKT-----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L +KT ST + VL SH PI I++ +R L+ + K Y +
Sbjct: 604 ILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYRSLSKL--KSTYTNKLIS 661
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ +E +RI +SY+ T T TGR++ PNLQN+P N ++ R
Sbjct: 662 MVNTESNRIHTSYNQTRTATGRLSSANPNLQNIPNR-----------NHDGRKI-----R 705
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A SV+VSADY Q+E+R++ H S D L S D+ + A+ V
Sbjct: 706 QAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTASEIFVTSLNLVT 765
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++ R +AK + +G+IYGM LS+ L V+ EA ++D + + YP + + + + +
Sbjct: 766 NEQRHQAKTINFGLIYGMSAFGLSKQLSVTCYEAQKYVDRYFQRYPGVMQYIQHIKDNVY 825
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+ G+V TL GR+ YLP+I S S++ AER A+N +QGSAADI K AM SI +
Sbjct: 826 KYGYVSTLEGRKLYLPNIYSKNLSKKKGAERAAINAPMQGSAADIIKKAMISINYWLKQD 885
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ ++I+Q+HDEL++EV I +K +ME+ L VPL V + G W
Sbjct: 886 DIPVQMIMQVHDELVFEVQNNFIDTAIKQIKKLMEECFILDVPLKVDIGVGKNW 939
>UniRef50_Q3ZYR5 Cluster: DNA-directed DNA polymerase I; n=3;
Dehalococcoides|Rep: DNA-directed DNA polymerase I -
Dehalococcoides sp. (strain CBDB1)
Length = 903
Score = 208 bits (508), Expect = 9e-52
Identities = 134/419 (31%), Positives = 218/419 (52%), Gaps = 29/419 (6%)
Query: 1075 INVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDV 1134
+NVE+ ++ IL E GI++D +L+ + V L++ + G+ FN S + +
Sbjct: 503 VNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQL 562
Query: 1135 AKVL------GIYNGRKT--STRKSVLSSHNTP--ISSIVMYWRKLNAILTKILYPLTEK 1184
++L + KT ST VL I +++ +R L + K Y T
Sbjct: 563 GRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRML--VKLKSTYLDTLP 620
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ R+ +S++ T T TGR++ EPNLQN IP+R E+
Sbjct: 621 RMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQN------IPVR-----GEMGREI----- 664
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F A G+VM++ DY Q+++R+L H S D AL D D+ + AA ++ EV
Sbjct: 665 RRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEV 724
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R+ AK + +G+IYGM + L Q ++S EA F+ ++ YP + ++ + +
Sbjct: 725 TKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQA 784
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ G+VETL GRRRY+P+I S R +AER A+N +QG++ADI K AM +++ +
Sbjct: 785 RTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKE 844
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALD 1482
+ RL+LQ+HDELI+EV + R +L+ M V ++PL V+LK G WG ++
Sbjct: 845 EKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWGDME 903
>UniRef50_Q41E45 Cluster: DNA polymerase A; n=1; Exiguobacterium
sibiricum 255-15|Rep: DNA polymerase A - Exiguobacterium
sibiricum 255-15
Length = 865
Score = 208 bits (508), Expect = 9e-52
Identities = 143/441 (32%), Positives = 223/441 (50%), Gaps = 33/441 (7%)
Query: 1052 KAWAIEMISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRD 1109
KA IE++ K + L + Q + +E + +L+ E GI VD + + D+
Sbjct: 440 KARMIELLFPKVKEELKANQQFELYETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAG 499
Query: 1110 SQDVLQKKAFKICGYHFNFNSSKDVAKVL------GIYNGRKT--STRKSVLSSHNT--P 1159
L++ + G FN NS K + +L + KT ST VL P
Sbjct: 500 RLHDLEQLIYGEVGEEFNINSPKQLGVILFEKMELPAFKKTKTGYSTAADVLEKLRPLHP 559
Query: 1160 ISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVP 1218
+ +M +R+L + + + L + + E +I + ++ T TGR++ PNLQN+P
Sbjct: 560 VIDHIMLYRELQKLQSTYVEGLQK---VIKEDGKIHTRFAQTIAQTGRLSSVNPNLQNIP 616
Query: 1219 RTFSIPLRYLTFDNTTSDEVIEFNCRNVF-RAAPGSVMVSADYCQLEMRLLTHFSEDSAL 1277
+ R F + PG + +ADY Q+E+R++ H SED L
Sbjct: 617 VRIEEGRKI----------------RKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTL 660
Query: 1278 TRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEME 1337
+ D D+ A+S V +V ++R++AK + +GIIYG+ + LSQ+L++S E
Sbjct: 661 VQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQNLNISRKE 720
Query: 1338 ASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQA 1397
A F+D + +P I++F + IE+ + GFVETL RRR +PDI S + R AER A
Sbjct: 721 AQDFIDRYFELFPQIKLFMDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTA 780
Query: 1398 VNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSV 1457
+NT IQGSAADI K AM + + + RL+LQ+HDELI+E + +L+K
Sbjct: 781 INTPIQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQA 840
Query: 1458 MEDTVELKVPLPVKLKCGYTW 1478
ME TV+L VPL V G++W
Sbjct: 841 MEQTVQLSVPLRVDGDAGHSW 861
>UniRef50_Q9F191 Cluster: DNA polymerase I; n=1; Brachyspira
hyodysenteriae|Rep: DNA polymerase I - Treponema
hyodysenteriae (Serpulina hyodysenteriae)
Length = 920
Score = 208 bits (507), Expect = 1e-51
Identities = 136/416 (32%), Positives = 216/416 (51%), Gaps = 30/416 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
N+E+ ++ +L++ E G+ + E + L + + ++K + G FN S K +
Sbjct: 520 NIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLE 579
Query: 1136 KVL----GIYNGRKT----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L GI +KT ST + VL+ S I+ ++ +RK + K Y
Sbjct: 580 YILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKL--KNTYLDVFPT 637
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I + RI +S++ T T TGR++ EPNLQN+P +E E R
Sbjct: 638 LINEKTGRIHASFNQTVTATGRLSSSEPNLQNIP--------------VRGEEGREI--R 681
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
N F G+++++ADY Q+E+RLL HFS D AL K++ D+ + A V + V
Sbjct: 682 NTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSKEHVT 741
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+R AK + + IIYG LS+ L + + EA F+ + TY ++ F V+EE +
Sbjct: 742 ASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFIKGYSSTYSRVKPFCDEVVEEVR 801
Query: 1365 RQGFVETLSGRRRYL-PDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+GFV T+ GR R L I S RN AER A+NT+IQGSAAD+ K AM +I +
Sbjct: 802 NKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSAADMIKVAMVAIHKEFKN 861
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
++++Q+HDEL+ EV E + +++MK +ME +V+ VP+ V + G +WG
Sbjct: 862 HLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEHSVKANVPIIVDIHKGNSWG 917
>UniRef50_Q6X9Q9 Cluster: DNA polymerase I; n=1; Spirochaeta
thermophila|Rep: DNA polymerase I - Spirochaeta
thermophila
Length = 897
Score = 208 bits (507), Expect = 1e-51
Identities = 142/414 (34%), Positives = 214/414 (51%), Gaps = 29/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ +L IL+ E GI +D E +S ++ + ++K+ F++ G+ FN S+K + +
Sbjct: 499 MEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIFELVGHEFNVGSTKQLQE 558
Query: 1137 VLGIYNG----RKT----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
VL + G +KT ST SVL + P+++ V+ +R L + K Y
Sbjct: 559 VLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYRSLTKL--KNTYVDVLPGL 616
Query: 1187 IYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
+ R+ + +S T TGR++ +PNLQN+P T I R
Sbjct: 617 VNPGTGRLHTWFSQVGTATGRLSSKDPNLQNIPI------------KTEEGRRI----RE 660
Query: 1246 VFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDD 1305
F G +SADY Q+E+ +L H SED AL R + DV ++ + VP V
Sbjct: 661 AFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEAVTP 720
Query: 1306 DLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKR 1365
+ R+ AK + +G+IYGM LS+ L + EA F+D++ TY +R F + I E +
Sbjct: 721 EQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAYFTTYAGVRAFIERTIAEAEE 780
Query: 1366 QGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFN 1425
+G+V TL GR+R LP ITS +++ AER AVNT IQGS ADI K AM ++ +
Sbjct: 781 KGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADIIKLAMIDLDAQMRRMG 840
Query: 1426 PKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
R+ILQ+HDELI+EV L++ ME V L VPL V++ G WG
Sbjct: 841 LASRMILQVHDELIFEVPPEELEVMKRLVRERMEGVVRLSVPLRVEMGVGRNWG 894
>UniRef50_Q2ACZ4 Cluster: DNA polymerase A; n=1; Halothermothrix
orenii H 168|Rep: DNA polymerase A - Halothermothrix
orenii H 168
Length = 754
Score = 207 bits (506), Expect = 2e-51
Identities = 135/414 (32%), Positives = 216/414 (52%), Gaps = 28/414 (6%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++EI ++ +L+ E +GI VD E + L + + L+ K ++ G FN NS K +
Sbjct: 349 DIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNGLESKIHELAGEKFNINSPKQLG 408
Query: 1136 KVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L G+ +KT ST VL PI ++ +R+L + K Y
Sbjct: 409 GILFEKLGLPVIKKTKTGYSTGAKVLEKLEDKHPIIPLISEYRQLMKL--KSTYVDALPP 466
Query: 1186 CIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I + R+ +S++ T TGR++ EPNLQN+P +DE E R
Sbjct: 467 MINPDTGRLHTSFNQMVTATGRLSSTEPNLQNIP--------------VRTDEGREIR-R 511
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
V+++ADY Q+E+R+L H S+D L + D+ A+ +V EV
Sbjct: 512 AFITENEDWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVT 571
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R+ AK + +GI YGM L++ L +S EAS +++ + + ++ + + V+ E K
Sbjct: 572 PNMRRHAKVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAK 631
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+G+V T+ RRRY+P+I S RR+ AER A+NT IQG+AADI K AM + + +
Sbjct: 632 TKGYVTTIFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYNRLKEN 691
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R++LQ+HDELI EV + + ++KS ME V++KVPL V L+ G W
Sbjct: 692 GSPARILLQVHDELILEVPREDLTEMARIVKSEMEKAVDMKVPLVVNLESGPNW 745
>UniRef50_Q1PUU8 Cluster: Stongly similair to DNA polymerase I; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Stongly similair
to DNA polymerase I - Candidatus Kuenenia stuttgartiensis
Length = 887
Score = 207 bits (506), Expect = 2e-51
Identities = 132/427 (30%), Positives = 230/427 (53%), Gaps = 31/427 (7%)
Query: 1063 QQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKIC 1122
++ L++ +Q +EI ++ +L+ E +GI ++ + + ++ D+ L+K+ +++
Sbjct: 478 KKEGLWQLFQE---IEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKEIYRVA 534
Query: 1123 GYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNA 1172
FN +S K + +L + R+T ST +VL+S P+ + + +R+L
Sbjct: 535 EQEFNISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLALEYRQLAK 594
Query: 1173 ILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFD 1231
+ K Y + + +I ++++ T T TGR++ PNLQN+P I +
Sbjct: 595 L--KSTYADALPNLLNQDTGKIHTTFNQTVTSTGRLSSSNPNLQNIPVKTDIGKQIR--- 649
Query: 1232 NTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSI 1291
R + +V +SADY Q+E+R+L HFSED+AL + D+D+ ++
Sbjct: 650 ------------RAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAFREDLDIHAAV 697
Query: 1292 AASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPA 1351
A+S VP V ++R+ AK + +GIIYG+ LS+ +S +A F+D++ Y
Sbjct: 698 ASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSLNDAKDFIDAYFTLYQG 757
Query: 1352 IRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAK 1411
+R F V+EE K G+V+TL R+R +PDI + RN AER A+NT+IQGSAAD+ K
Sbjct: 758 VREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAERIAINTIIQGSAADLIK 817
Query: 1412 SAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVK 1471
AM +I + + + R++LQ+HDEL++EV + +++ M V L+VP+ V
Sbjct: 818 VAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQEEMGHAVTLRVPVKVN 877
Query: 1472 LKCGYTW 1478
+K G W
Sbjct: 878 IKTGKNW 884
>UniRef50_Q9X1V4 Cluster: DNA-directed DNA polymerase I; n=4;
Thermotogaceae|Rep: DNA-directed DNA polymerase I -
Thermotoga maritima
Length = 893
Score = 206 bits (504), Expect = 3e-51
Identities = 134/415 (32%), Positives = 221/415 (53%), Gaps = 30/415 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L+ EL+G+ VD E + +L + + L ++ ++I G FN NS K V++
Sbjct: 495 IEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSR 554
Query: 1137 VL----GIYNGRKT------STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L GI KT STR VL + I +++ +RK+ + + + L +
Sbjct: 555 ILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQKLKSTYIDALPKM 614
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ + RI +S++ T T TGR++ +PNLQN+P T S+E E
Sbjct: 615 --VNPKTGRIHASFNQTGTATGRLSSSDPNLQNLP--------------TKSEEGKEIR- 657
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
+ + P +VSADY Q+E+R+L H S D L R + +DV A+ +V EV
Sbjct: 658 KAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKPEEV 717
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+++R+ K + + IIYG+ LS L V EA + ++ YP +R + + V+ E
Sbjct: 718 TEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEA 777
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
K +G+V TL GR+R +P + + + + ER A+NT IQG+AADI K AM I+ +
Sbjct: 778 KEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAADIIKLAMIEIDRELKE 837
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ ++I+Q+HDEL++EV K + L+K M + V+L VPL V + G TW
Sbjct: 838 RKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNVVKLSVPLEVDVTIGKTW 892
>UniRef50_A6DEW9 Cluster: DNA polymerase I; n=1; Caminibacter
mediatlanticus TB-2|Rep: DNA polymerase I - Caminibacter
mediatlanticus TB-2
Length = 873
Score = 206 bits (504), Expect = 3e-51
Identities = 149/420 (35%), Positives = 222/420 (52%), Gaps = 49/420 (11%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
N+E+ ++ IL + E GI VD E + +L ++ + L K+ + + G FN S K ++
Sbjct: 488 NIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLAGSEFNIKSPKQLS 547
Query: 1136 ----KVLGIYNGRKT----STRKSVLSS-HNT-PISSIVMYWRKLNAILTKILYPLTEKA 1185
KVL + +KT ST + VL+S NT PI ++ +RK + +LT + PL E
Sbjct: 548 HILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYRKFDKLLTTYIIPLKE-- 605
Query: 1186 CIYSEGDRIMSSYSTF----TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
Y++ D+ Y+ F T TGR++ PNLQN+P TS E+
Sbjct: 606 --YAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIP---------------TSTEI--- 645
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
N RN F + +S DY Q+E+RLL HFS+D L +D D+ AA +
Sbjct: 646 NIRNAF--ITDKLFISLDYSQIELRLLAHFSKDPHLIEAFLNDKDIHLETAAKIFGEDKA 703
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
+ + R AK + +G+IYGMG K LS+ ++VS EA F++ + + ++ F +
Sbjct: 704 K---EYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIEKYFENFSTVKDFIEKTKV 760
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
E K +G+VETL RRR+ D S ER+AVNT+ QGSAADI K AM I+
Sbjct: 761 ETKEKGYVETLFKRRRFF-DFNSANARTLAAYEREAVNTIFQGSAADIIKKAMIDIK--- 816
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGAL 1481
N F P ++ILQ+HDELI+E+ NK K +ME+ ++L+VPL V + WG L
Sbjct: 817 NKF-PSSKMILQIHDELIFEI--DNKDEAYE-YKEIMENAIKLEVPLKVGISFAKRWGEL 872
>UniRef50_A5CDT3 Cluster: DNA polymerase I; n=1; Orientia
tsutsugamushi Boryong|Rep: DNA polymerase I - Orientia
tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)
Length = 910
Score = 206 bits (504), Expect = 3e-51
Identities = 139/441 (31%), Positives = 230/441 (52%), Gaps = 35/441 (7%)
Query: 1058 MISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKK 1117
++SE +N L Y +++ + IL N E +GI ++ L+ L ++ ++L+++
Sbjct: 489 LMSELFKNKLLHCYYE---IDLPICYILRNIENNGIKINVPLLKELSAQLKHKIELLEQQ 545
Query: 1118 AFKICGYHFNFNSSK-------DVAKVLGIYNGRKT---STRKSVL---SSHNTPISSIV 1164
+KICG FN S K DV K+ +KT ST VL S I+ ++
Sbjct: 546 IYKICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVLENLSRAGIKIADLL 605
Query: 1165 MYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSI 1223
+ WR+L +LT + L + I + RI ++ T T T R++ H PNLQN+P
Sbjct: 606 LKWRQLTKLLTTYIDTLPTQ--INNNTFRIHTTLLQTSTTTSRLSSHSPNLQNIPIRSEY 663
Query: 1224 PLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKS 1283
L+ R+ F A GS ++SADY Q+E+R+L++F+ L +
Sbjct: 664 GLKV----------------RSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIM 707
Query: 1284 DVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMD 1343
D+ S AA + +V ++ R+KAK + +G+IYG+ +++ L++S EA+ +++
Sbjct: 708 GEDIHSSTAAQIFKINADQVTEEHRRKAKAINFGVIYGISAFGVAKQLNISNTEAAQYIN 767
Query: 1344 SFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQ 1403
+ + YP+IR + + G+V+ + GRR Y+P I S + RN A+R A+N IQ
Sbjct: 768 HYFQEYPSIRQYMDETKKFAVENGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQ 827
Query: 1404 GSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE 1463
+A+DIAK AM E I S P +L+LQ+HDEL++E+ +L+K ME+
Sbjct: 828 STASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMENIPY 887
Query: 1464 LKVPLPVKLKCGYTWGALDEV 1484
PL V+LK G WG + +V
Sbjct: 888 FSFPLKVELKIGDNWGEMQKV 908
>UniRef50_Q010Y2 Cluster: Helicase and polymerase containing protein
TEBICHI; n=2; Ostreococcus|Rep: Helicase and polymerase
containing protein TEBICHI - Ostreococcus tauri
Length = 1489
Score = 206 bits (504), Expect = 3e-51
Identities = 170/537 (31%), Positives = 255/537 (47%), Gaps = 54/537 (10%)
Query: 270 QVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYG 329
Q++GMSA++PNL +LA WL+A LF+T FRP+ LE + KS N
Sbjct: 230 QILGMSASIPNLTSLAEWLSARLFVTDFRPVRLERVIRT------------MTNKSPNSD 277
Query: 330 VSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTF-CKIGCEGSEFGMILRSQ 388
V+ + ++ ET+ E SVL+FC ++ C+ LA L S C C G+ + +
Sbjct: 278 VA---HIAELAQETVDEQGSVLVFCSSRRACKILADDLQSMMRCDPSCNGAN--VTSSGE 332
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
L + + E K+ +G I G+ YHHAGL+ +E + + GA+K G IRVL
Sbjct: 333 LLTSFVAFLGE--KSEVLGY-------IKSGIAYHHAGLSREENEAVAGAYKRGLIRVLC 383
Query: 449 ATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEK 508
TSTL++GVNLPAR+VI+R + + +QM GRAGR G D G +I+ C +
Sbjct: 384 CTSTLATGVNLPARRVILRDTNMGWKKLTARDVQQMCGRAGRAGLDASGSAIVFCQKR-- 441
Query: 509 KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILS 568
DL+ + + R +LE +AS + + +++L Y CTLLSA +
Sbjct: 442 --------ADLEKRLTSAVAEIGMRRIMLEAVASGLVKTPEDVLAYVKCTLLSALNDFND 493
Query: 569 Q-NLILEDTLKELE-NYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLT-LFCELQK 625
I D L+ + N L+ + N ++ LG A ++ M P D + + +++
Sbjct: 494 AVKQIAIDALQWCQRNALLVWSTTTYLWN---SSPLGTA-VAGGMMPLDQIQPIVRDIRI 549
Query: 626 ARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFII 685
AR+ LVL T LHL++L+T V G L++ W L + L QE
Sbjct: 550 AREDLVLSTPLHLLFLLTSPPVLDSDGAP--LNVRETWP-LDRFAAVWSNLSSEQERIAR 606
Query: 686 KCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGT 745
K +D + +RF+ ALAL DL+ EV + VA K+ + Q+A
Sbjct: 607 KV-------EIDEGYIQRLRRFHLALALTDLIQEVPIDVVAQKYGLRTFDIAEEQKACAR 659
Query: 746 FAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAG 802
FA V C LG ME LI++ DR+ G Q RAR L+ G
Sbjct: 660 FASYVATICGTLGMGDMEFLINKISDRITAGAQEEILELTKIPHIGIHRARALYAGG 716
Score = 145 bits (352), Expect = 7e-33
Identities = 93/289 (32%), Positives = 148/289 (51%), Gaps = 20/289 (6%)
Query: 1205 GRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLE 1264
GR+T EPN ++ FD + + + R+ F V + DY LE
Sbjct: 1176 GRLTHIEPNFHSMAHDMKC---VDAFDGLDAPVI---SVRSAFTPPADRVFLRVDYSHLE 1229
Query: 1265 MRLLTHFSEDSALTRIMKSDV------DVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGI 1318
+R++ HFS D L ++++ D F +A W VP V D RQ+ K L YGI
Sbjct: 1230 LRVMAHFSGDQTLIALLQNPEPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGI 1289
Query: 1319 IYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE---ECKRQGFVETLSGR 1375
+YG G K L++ L +S+ +A + +D + P + + V+ E K V T+S R
Sbjct: 1290 LYGSGVKRLARELRLSDEKAKILVDELKSMLPTLMNWRDDVVARAIEEKPIPRVTTISSR 1349
Query: 1376 RRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFN--PKPRLILQ 1433
RY P++ S R+ AERQAVNT+ QGSAADI K+A+ + + + + + + +L+L
Sbjct: 1350 HRYFPELLSRSGDERSAAERQAVNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLT 1409
Query: 1434 MHDELIYEVHETNKSRFISLMKSVMEDTV---ELKVPLPVKLKCGYTWG 1479
+HDE ++EV+ + ++++ ME L VPLPVK + G + G
Sbjct: 1410 VHDEAVFEVNASVAKAAARIVRNTMESVAGVFNLSVPLPVKAQIGPSLG 1458
Score = 128 bits (309), Expect = 1e-27
Identities = 65/174 (37%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
L+ WG+P + +G+ E++ WQ CL VL +NL+YSAPTS GK+LVA++L
Sbjct: 15 LEFWGVPETAREALARKGVRELYPWQAECLALPGVLDGSSNLLYSAPTSGGKSLVADVLL 74
Query: 151 IKTVLERQKKV-IIILPFVSIVREKMFYLQNILSSSGIRVE---GFMGSQSPAGGMQNVH 206
I+ E+ + +++LPFV++ E+ L+N+L+ S +RV G G P+ +
Sbjct: 75 IRRFREKPGSIAMMVLPFVALCEERADSLENLLAGSEVRVRRMYGGRGGTIPSDSSAST- 133
Query: 207 VAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKY 260
+ + T E+AN + +RLL++ + +L V+VDELHL+ D +RG +EL LTK+ +
Sbjct: 134 LLVLTPERANQVTSRLLEDNRLRELSVVIVDELHLIQDNDRGATMELFLTKLVF 187
>UniRef50_P74933 Cluster: DNA polymerase I; n=1; Treponema
pallidum|Rep: DNA polymerase I - Treponema pallidum
Length = 997
Score = 206 bits (504), Expect = 3e-51
Identities = 134/414 (32%), Positives = 213/414 (51%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ +L IL+ E GI + K++V +L D + F + G+ FN S K +
Sbjct: 600 IEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQT 659
Query: 1137 VL--------GIYNGRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
VL G N + ST SVL + PI+ ++ +R L+ + + L + A
Sbjct: 660 VLFQELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLA- 718
Query: 1187 IYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
+ R+ +S+ T TGR++ PNLQN+P +T ++ R
Sbjct: 719 --DQTGRVHTSFVQIGTATGRLSSRNPNLQNIP-----------IKSTEGRKI-----RQ 760
Query: 1246 VFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDD 1305
F+A G ++SADY Q+E+ +L H S+D L + +D+ AA +V +V
Sbjct: 761 AFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQP 820
Query: 1306 DLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKR 1365
+R+ AK + +GI+YGM LS L +S+ EA F+ + TYP + F+ V E+ ++
Sbjct: 821 AMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRK 880
Query: 1366 QGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFN 1425
G+V +L+GRRRY+ I S T R AER A+NT IQ SAADI K AM +I+
Sbjct: 881 TGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRP 940
Query: 1426 PKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
+ +L+LQ+HDELI+E + ++ + ME VEL +PL + ++ G +WG
Sbjct: 941 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHVESGNSWG 994
>UniRef50_A6TSU6 Cluster: DNA polymerase I; n=5; Clostridiaceae|Rep:
DNA polymerase I - Alkaliphilus metalliredigens QYMF
Length = 897
Score = 206 bits (503), Expect = 4e-51
Identities = 134/414 (32%), Positives = 218/414 (52%), Gaps = 31/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ ++++L+ E GI VD+ ++ L + + D+L K ++ +FN NS K + +
Sbjct: 499 VELPLVEVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELAETNFNINSPKQLGE 558
Query: 1137 VLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILY--PLTEKACIYSEG--- 1191
VL + + K + ++T + ++ + + I+ KIL +T+ Y +G
Sbjct: 559 VL--FEKLELPPIKKTKTGYSTN-AEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLN 615
Query: 1192 ------DRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
RI S+++ T T TGRI+ EPNLQN+P + R R
Sbjct: 616 IINPETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKLEMGRRL----------------R 659
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
VF A + ADY Q+E+R+L H ED L + D+ AA DVP EV
Sbjct: 660 KVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVT 719
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D +R AK + +GI+YG+ + LSQ+L+++ ++A ++D++ YP+++ + ++E+
Sbjct: 720 DSMRSSAKAVNFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAH 779
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+QG+V TL RRRYLP++ S + R+ ER A+NT IQGSAADI K AM ++ +
Sbjct: 780 QQGYVVTLFNRRRYLPELKSRNFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQ 839
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+LILQ+HDELI E + I +++ ME+ + LKV L V L W
Sbjct: 840 GLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAMNLKVQLKVDLAYANNW 893
>UniRef50_A7DR62 Cluster: DEAD/DEAH box helicase domain protein
precursor; n=1; Candidatus Nitrosopumilus maritimus
SCM1|Rep: DEAD/DEAH box helicase domain protein
precursor - Candidatus Nitrosopumilus maritimus SCM1
Length = 709
Score = 206 bits (503), Expect = 4e-51
Identities = 157/507 (30%), Positives = 269/507 (53%), Gaps = 46/507 (9%)
Query: 126 LFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSS 185
L D N++ SAPT++GKTL+A + + + + + KVI + P ++ EK + L
Sbjct: 36 LLDGKNILVSAPTASGKTLIAMLAMMSYISKNKGKVIYLSPLRALAAEKFSEFKK-LEKV 94
Query: 186 GIRVEGFMGSQSPAGGMQNVH-------VAICTIEKANSMINRLLDNGNIEDLGAVVVDE 238
G+ + +G + G +N+ + I T EK +S+I + I+++G V+ DE
Sbjct: 95 GLGNKTKVGIST--GDFENIEKNLEKNSILILTNEKMDSIIRHGAEW--IDEIGLVIADE 150
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFR 298
+HL+GD++RG LE++LT++K + +K Q++G+SAT+ N + +A WL L ++R
Sbjct: 151 VHLIGDESRGPTLEMILTQLKLLETKP----QIVGLSATITNSDEIADWLECVLVENSWR 206
Query: 299 PIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKN 358
P+PL E + +G + E + S G + + ++++K+G L+F T+
Sbjct: 207 PVPLSEGVCDAGEVTMADGT-VFEVERSIRGTP-----IDLGVQSVKDGGQSLVFAETRT 260
Query: 359 RCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISF 418
R +SLA + +I E E + ++ S+ IL +N L + L +
Sbjct: 261 RSKSLATKAADAISQI-LEKKEISQLEKT---SKKILS-----ENEHTELVKTLALLVKK 311
Query: 419 GVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVII------RSPVFQ 472
GV +HHAGL + R+IIE F++G I++L +T TL++GVNLPAR+V+I + V
Sbjct: 312 GVAFHHAGLNQNCREIIETEFRNGTIKLLSSTPTLAAGVNLPARRVVISNVNRYNAKVGA 371
Query: 473 KQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKY 532
+PI+IL YKQ+ GRAGR D GESI++ + + + G+ +P++S I T +K
Sbjct: 372 NRPISILEYKQLCGRAGRPQYDNHGESIIVGNGNTDDLIDYYIHGEPEPIESKI-TDDKS 430
Query: 533 MRA-ILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNN 591
+R +L +I +N K+++L + TL Q + ++ +L+ L + LI +
Sbjct: 431 LRTHLLSVIVTNPGIKKEDILEFFLQTLGGMQSRKATVKFAIDISLRFLSSQYLIVKKG- 489
Query: 592 HSENHYVATALGKACLSSSMAPNDGLT 618
Y AT GK +SM D LT
Sbjct: 490 ---ERYAATEFGK---KTSMLYIDPLT 510
>UniRef50_P30313 Cluster: DNA polymerase I, thermostable; n=8;
Thermus|Rep: DNA polymerase I, thermostable - Thermus
thermophilus
Length = 831
Score = 206 bits (502), Expect = 5e-51
Identities = 136/416 (32%), Positives = 217/416 (52%), Gaps = 35/416 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE + ++L+ E G+ +D + L +V L+++ F++ G+ FN NS + +
Sbjct: 432 VEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHPFNLNSRDQLER 491
Query: 1137 VL-------GIYNGRKT---STRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEK 1184
VL I KT ST +VL + PI ++ +R+L + + PL
Sbjct: 492 VLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-- 549
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
A ++ + R+ + ++ T T TGR++ +PNLQN+P + R
Sbjct: 550 ALVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRI---------------- 593
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDV-PEGE 1302
R F A G V+V DY Q+E+R+L H S D L R+ + D+ A+ V PEG
Sbjct: 594 RRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEG- 652
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
VD +R+ AK + +G++YGM LS L + EA F++ + ++YP +R + + +EE
Sbjct: 653 VDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEE 712
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
+R+G+VETL GRRRY+PD+ + + S R AER A N +QG+AAD+ K AM + +
Sbjct: 713 GRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFPRLQ 772
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R++LQ+HDEL+ E + R +L K VME L+VPL V++ G W
Sbjct: 773 ELG--ARMLLQVHDELVLEAPKDRAERVAALAKEVMEGVWPLQVPLEVEVGLGEDW 826
>UniRef50_Q9RHA4 Cluster: DNA polymerase I; n=2; Thermomicrobium
roseum|Rep: DNA polymerase I - Thermomicrobium roseum
Length = 917
Score = 205 bits (501), Expect = 6e-51
Identities = 129/420 (30%), Positives = 220/420 (52%), Gaps = 22/420 (5%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L + E GI +D + +L + L+++ +++ G+ N NS + ++
Sbjct: 502 IELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGHPLNINSPQQLST 561
Query: 1137 VL----GIYNGRKTSTRKSVLSS------HNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
+L G+ G++T T SV PI ++ +R+L + + + L +
Sbjct: 562 LLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKLKSTYVDALPRQ-- 619
Query: 1187 IYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
++ + R+ + + T TGR++ +PNLQN+P + L I N R
Sbjct: 620 VHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGL-------AVRRAFIADN-RP 671
Query: 1246 VFRAAPGSVMV-SADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
+R A +++ S DY Q+E+RL+ HFS+D AL R D+ + A+ VP V
Sbjct: 672 GYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVT 731
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R+ AK + +GI+YGM L++ +S +A F++++ + +P + + +
Sbjct: 732 PEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAA 791
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
G+VETL GRRRYLP+ITS +RR AER AVN +QG+AADI K AM ++ +
Sbjct: 792 ELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGTAADIMKLAMIAVHRPLAER 851
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEV 1484
+ R++LQ+HDEL+ EV E+ + L+ + M VEL VPL V K G W L+ V
Sbjct: 852 GLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVELSVPLEVDAKAGPNWADLEPV 911
>UniRef50_A5Z4J5 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Eubacterium ventriosum ATCC 27560
Length = 877
Score = 205 bits (500), Expect = 8e-51
Identities = 137/415 (33%), Positives = 214/415 (51%), Gaps = 32/415 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
NVEI + L + E GI+V + + ++ D L+K F G+ FN NS K +
Sbjct: 479 NVEIPLTYALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEFNINSPKQLG 538
Query: 1136 KVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
++L + G+KT ST SVL + P S ++ +R+L K+ +
Sbjct: 539 EILFGEMQLPGGKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQL----AKLKSTYADGL 594
Query: 1186 CIY-SEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+Y E +RI ++ T T TGRI+ EPNLQN+P +PL E+
Sbjct: 595 AVYIGEDNRIHGKFNQTITATGRISSTEPNLQNIP--VRMPL---------GREI----- 638
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R VF G V + ADY Q+E+R+L H S+D L D+ + A+ VP EV
Sbjct: 639 RKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEV 698
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R AK + +GI+YG+ + LS L +S EA ++ + +YP I+ + + ++E
Sbjct: 699 TKEQRSNAKAVNFGIVYGISSFGLSNDLSISRKEAEQYIKDYFISYPGIKNYLDNSVKEA 758
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
K +G+ T+ GRRR +P++TS +R ER A+N+ IQGSAADI K AM ++ +
Sbjct: 759 KEKGYSVTMFGRRRPIPELTSGNFMQRQFGERVAMNSPIQGSAADIMKIAMINVAKELKE 818
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ K +++LQ+HDEL+ E +E + ++K ME L VPL V ++ G W
Sbjct: 819 KDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAAHLNVPLDVDVQVGNNW 873
>UniRef50_Q0AVE2 Cluster: DNA polymerase I; n=1; Syntrophomonas wolfei
subsp. wolfei str. Goettingen|Rep: DNA polymerase I -
Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
Length = 866
Score = 204 bits (499), Expect = 1e-50
Identities = 133/414 (32%), Positives = 216/414 (52%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ + ++L+ E G+ V++ ++R+ ++ +++ F++ G FN NS K + K
Sbjct: 467 VEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELAGSSFNINSPKQLGK 526
Query: 1137 VL------GIYNGRKT--STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
VL + KT ST VL I + ++ +R+L+ I K Y +
Sbjct: 527 VLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAHILNYRQLSKI--KSTYADALQEL 584
Query: 1187 IYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
I+ E R+ + + T TGR++ EPNLQN+P R R
Sbjct: 585 IHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEEGRRI----------------RQ 628
Query: 1246 VFRA-APGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A P ++++ADY Q+++R L H S D L KS VD+ A VP VD
Sbjct: 629 AFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIHTRTAVEIFHVPVEWVD 688
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+LR++AK + +GIIYG+ + L++ VS EA ++D++ +YP ++ + + ++E +
Sbjct: 689 SELRRRAKAVNFGIIYGISDFGLARDTGVSRKEARKYIDNYLNSYPGVKKYMEDIVEFGR 748
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
R G+VETL RRRYLP++ + + R A+NT +QG++ADI K AM +++ I
Sbjct: 749 RHGYVETLLKRRRYLPELNARNKMVQAFGRRMALNTPVQGTSADIIKLAMIKVDEEIRKR 808
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ RL+LQ+HDEL+ E+ T L++ ME+ LKVPL V LK G W
Sbjct: 809 RLQARLLLQVHDELLLELPRTELEEVSGLLRDCMENACSLKVPLEVSLKTGPNW 862
>UniRef50_Q6MPP6 Cluster: DNA polymerase I; n=1; Bdellovibrio
bacteriovorus|Rep: DNA polymerase I - Bdellovibrio
bacteriovorus
Length = 863
Score = 204 bits (497), Expect = 2e-50
Identities = 128/411 (31%), Positives = 220/411 (53%), Gaps = 32/411 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+++ + ++L + E G+ +DK+L+++ ++ ++K+ + G FN S K +
Sbjct: 472 LDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIAEIEKQIHEAAGESFNVGSPKQLGV 531
Query: 1137 VL----GIYNGRKT----STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIY 1188
+L G+ G+KT ST + VL PI+ +V+ WR+++ + K Y I
Sbjct: 532 ILFEKLGLPAGKKTKTGYSTDEEVLLGLEHPIAKLVLQWREMSKL--KSTYVDALPTMID 589
Query: 1189 SEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVF 1247
+ +R+ +S++ T TGR++ +PNLQN IP+R T + + R F
Sbjct: 590 PKDERVHTSFNQALTTTGRLSSTQPNLQN------IPIR------TARGQQV----RKAF 633
Query: 1248 RAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDL 1307
AAP ++S DY Q+E+R+L H SED L + D+D+ + AA VP +V +
Sbjct: 634 IAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEH 693
Query: 1308 RQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQG 1367
R+ AK + +GI YG G L+++L +S EA ++ + + +R + I+ +G
Sbjct: 694 RRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVREYIDGTIKMAHEKG 753
Query: 1368 FVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPK 1427
+VETL GRRRY+ ++ S + + ER A+N IQG+A+D+ K AM + + +
Sbjct: 754 YVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKAMIEVFEKV-----P 808
Query: 1428 PRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R++LQ+HDELI+E E N + + S+ME+ ++LKVPL V G W
Sbjct: 809 VRMLLQVHDELIFEDFEENLQKHSPQLVSIMENVMKLKVPLKVNYAIGNNW 859
>UniRef50_A4GJ55 Cluster: Putative DNA polymerase I; n=1; uncultured
Nitrospinaceae bacterium|Rep: Putative DNA polymerase I -
uncultured Nitrospinaceae bacterium
Length = 894
Score = 203 bits (496), Expect = 2e-50
Identities = 131/415 (31%), Positives = 214/415 (51%), Gaps = 33/415 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++++L+ ELHG+ +DK + +L ++ + QK+ + + G FN NS K ++
Sbjct: 496 LELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQLSV 555
Query: 1137 VL----------GIYNGRKT--STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L NG T S + + + H P +V+ +R+L + K Y +
Sbjct: 556 ILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELP--DVVLTYRQL--VKLKSTYADALQ 611
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
I++ R+ +S++ T TGR++ PNLQN IP+R T I
Sbjct: 612 EDIFNNTGRVHTSFNQTVAATGRLSSSNPNLQN------IPIR------TEMGREI---- 655
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F A + ++SADY Q+E+R+L H SED AL + D+ A +
Sbjct: 656 RKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERL 715
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D + R+ AK + +GI+YG+ LS+ L + +A F+D + Y ++V+ + +
Sbjct: 716 DAEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDAKKFIDQYFALYKKVKVYMVETVAQA 775
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
K G+ TL RRRYLPD+ S R +AER A+N+ +QGSAAD+ K AM + + I +
Sbjct: 776 KEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAINSPVQGSAADLIKLAMIRLAEQIRT 835
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
K R+ILQ+HDEL++E E + +L+ ME+ + LKVPL V + G W
Sbjct: 836 KKLKSRMILQVHDELVFECPEDEEQEMRALVTKEMEEVMPLKVPLIVDIGWGENW 890
>UniRef50_A3H7W4 Cluster: DEAD/DEAH box helicase-like; n=1;
Caldivirga maquilingensis IC-167|Rep: DEAD/DEAH box
helicase-like - Caldivirga maquilingensis IC-167
Length = 756
Score = 203 bits (496), Expect = 2e-50
Identities = 186/698 (26%), Positives = 321/698 (45%), Gaps = 63/698 (9%)
Query: 126 LFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSS 185
L + N++ + T++GKTL+AE+ + VL KK ++ +P ++ EK+ N S
Sbjct: 37 LLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALAFEKLNDF-NTYSEL 95
Query: 186 GIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGD 244
GIRV G S + + V I T EK +S++ L I ++G +++DE+H + D
Sbjct: 96 GIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLR--LKPSWIWNVGQLIIDEIHFIND 153
Query: 245 QNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEE 304
RG I+E ++ K++ + +L Q+IG+SAT+ N E LA WLNA+L + +RP+ L E
Sbjct: 154 DERGPIIESIVAKLRML----NLNPQIIGLSATIGNPEELANWLNAKLVKSDWRPVSLRE 209
Query: 305 YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLA 364
Y+ Y+ + + G DS++ + ++T+ +G VL+F ++ +A
Sbjct: 210 -----GVYHKGVVTYVNDGEKRISGQG--DSLINLTVDTLNDGGQVLVFSSSRQGAVRIA 262
Query: 365 QLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHH 424
+ L+ C + G + + E + + +S + L + L I GV +HH
Sbjct: 263 RKLAEYICSSPVRYIDPG-------EAGKLAEEVRETSSSRI-LAEELTGLIKCGVSFHH 314
Query: 425 AGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-----SPVFQKQPINIL 479
AGL L+ R +IE F+ G +RVL +T+TL++GVNLPAR+VI+ P + I ++
Sbjct: 315 AGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVM 374
Query: 480 SYKQMSGRAGRMGRDTKGESILICSEAEK--KIGFNLMMGDLDPVKSCIETKEKYMRAIL 537
YKQM+GRAGR G D GE+I+I S ++ + + + VKS L
Sbjct: 375 EYKQMAGRAGRPGLDPYGEAIIIVSSKDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTL 434
Query: 538 EIIASNISCSKQELLLYTDCTL------LSAQKEILSQNLILEDTLKELENYELIRIQNN 591
+AS + + EL+ +T T LSA + S ++ + EL +Y I I+N
Sbjct: 435 SAVASQYAETIDELVKFTSNTFAGFQGKLSAMIQANSVRRMISRIIDELVDYGFI-IRNG 493
Query: 592 HSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVTPY--SVSS 649
+ AT +G + P+ L+ L ++ + +P V
Sbjct: 494 ---DKLEATEVGAVVNRMYLDPDTAHVFIMGLRNLNSDADLNAYSLMLVVKSPKIPKVKV 550
Query: 650 QWGNIDWL--HLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRF 707
+ +D L ++W S+ V ELV E + + F
Sbjct: 551 RRNELDELAQQAASMWSSIPLKPSDVDELVNYPEDY-----------------EDFLSEF 593
Query: 708 YTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEIL-I 766
TA+AL + +NE + ++ + G L+ L + G + + LG + +
Sbjct: 594 KTAMALLEWINESNEDQIMKTYDVQPGDLRVLSDQAEWLIGALQELARTLGLSGNVVNGL 653
Query: 767 SQFQDRLHFGIQXXXXXXXXXXXXNG-MRARTLFDAGF 803
+ R+ +G+ G +RAR L+ AG+
Sbjct: 654 RALRYRVKYGVNDELLELVVNLEGVGRVRARALYAAGY 691
>UniRef50_Q67R60 Cluster: DNA polymerase I; n=2; Firmicutes|Rep: DNA
polymerase I - Symbiobacterium thermophilum
Length = 874
Score = 202 bits (492), Expect = 8e-50
Identities = 129/414 (31%), Positives = 217/414 (52%), Gaps = 31/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ ++ IL+ E G+ +D + + ++ + ++ +++ G FN +S K +
Sbjct: 468 VELPLMPILAEMEAVGVGIDPAALHEMSVELERRILQVSQEIYELAGMQFNISSPKQLGD 527
Query: 1137 VL----GIYNGRKT-----STRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKA 1185
VL G+ +G+KT ST VL PI++ V+ +R L + + L +
Sbjct: 528 VLFGKLGLPSGKKTKSGGYSTDAEVLEELAAAYPIAARVLDYRTLTKLKGTYVDALGQ-- 585
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ + RI ++++ T TGR++ +PNLQN+P R R
Sbjct: 586 -LIARDGRIHTTFAQTVAETGRLSSKDPNLQNIPIRIEEGRRI----------------R 628
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A PG V++SADY Q+E+R++ HFS D AL D D+ AA VP +V
Sbjct: 629 KAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVT 688
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R++AK + +G+IYG + L++ + +S EA F++++ + +R + + E +
Sbjct: 689 PEMRRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAR 748
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+G+V TL GRRR LP+I + + R AER A+NT IQG+AAD+ K AM ++ +
Sbjct: 749 EKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREE 808
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R+ILQ+HDEL++E R L++ ME ++L VPL V++K G W
Sbjct: 809 GLSARMILQVHDELVFECPVGEVDRLARLVRREMEGAMKLDVPLKVEVKVGPDW 862
>UniRef50_Q6X9S0 Cluster: DNA polymerase I; n=1; Caldibacillus
cellulovorans|Rep: DNA polymerase I - Caldibacillus
cellulovorans
Length = 903
Score = 201 bits (491), Expect = 1e-49
Identities = 131/416 (31%), Positives = 226/416 (54%), Gaps = 28/416 (6%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ + L+ E G+ VD ++ ++R++ ++++ +++ G FN S+K +
Sbjct: 503 DLELPLSSELAVMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTTFNIGSTKQLG 562
Query: 1136 KVL----GIYNGRKT----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
++L G+ +KT ST VL + PI ++++R+L + + + L ++
Sbjct: 563 EILFDKLGLPVVKKTKTGYSTDADVLEELAPYHPIVEKILHYRQLTKLQSTYIEGLLKE- 621
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I + +I + Y T TGR++ PNLQN IP+R +E + +
Sbjct: 622 -IRPQTGKIHTYYQQTIAATGRLSSQFPNLQN------IPIRL--------EEGRKIR-K 665
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
+ PG +M++ADY Q+E+R+L H S D L ++ +D+ A V E VD
Sbjct: 666 AFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRVD 725
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+R++AK + +GIIYG+ + L+Q+L++S EA+ F+ + + ++ + + ++E+ +
Sbjct: 726 ARMRRQAKAVNFGIIYGISDFGLAQNLNISRKEAAEFIRQYFAVFSGVKAYRERIVEQAR 785
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
R G+V TL GRRRYLPDI + + R+ AER A+NT IQG+AADI K+AM + +
Sbjct: 786 RDGYVTTLLGRRRYLPDINASNYNLRSFAERTAMNTPIQGTAADIIKTAMVRLTRRMRDV 845
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGA 1480
K R++LQ+HDEL++EV L+ VME V L VPL V + G W A
Sbjct: 846 GLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESAVPLDVPLKVDVSWGADWYA 901
>UniRef50_Q1NVM3 Cluster: DNA polymerase A; n=3;
Deltaproteobacteria|Rep: DNA polymerase A - delta
proteobacterium MLMS-1
Length = 910
Score = 201 bits (491), Expect = 1e-49
Identities = 139/411 (33%), Positives = 215/411 (52%), Gaps = 29/411 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ +L IL+ E GI+VD ++ L + L+ K ++ G FN NS + + +
Sbjct: 509 VEMALLPILARMERLGILVDPAVLDELEREFGRELARLESKIAELAGESFNINSPRQLGE 568
Query: 1137 VL----GIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAI-----LTKILYPLTEK-AC 1186
VL + +GRKT K+ S+ + + Y A+ L+K+ +K A
Sbjct: 569 VLYERLKLPHGRKTKG-KTGYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDKLAT 627
Query: 1187 IYSEGD-RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ D R+ ++++ T T TGR++ PNLQN IP+R T + R
Sbjct: 628 LIDPADGRVHTTFNQTVTATGRLSSSNPNLQN------IPIR------TPEGRRL----R 671
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F AA G + ++ADY Q+++R+L H+S D L D D+ AA V +G V
Sbjct: 672 AAFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVS 731
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D+R+ AK + +GI+YGM L++ L S EA F+D + Y + F + ++E+ +
Sbjct: 732 ADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQAR 791
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
R G+V TL RRR LP+I S RR AER A+NT IQG+AADI K A + + +
Sbjct: 792 RDGWVGTLLNRRRPLPEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREA 851
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCG 1475
+ +LQ+HDELI+EV + ++ L++ ME+ +EL VPL V LK G
Sbjct: 852 GCRSEALLQIHDELIFEVPQDELAQVGPLIRQAMEEVMELAVPLTVNLKSG 902
>UniRef50_Q0F0N6 Cluster: DNA polymerase I; n=1; Mariprofundus
ferrooxydans PV-1|Rep: DNA polymerase I - Mariprofundus
ferrooxydans PV-1
Length = 917
Score = 201 bits (491), Expect = 1e-49
Identities = 135/414 (32%), Positives = 217/414 (52%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA- 1135
+E+ + ++L++ E G VD E+++ L T L+ + G FN S K +
Sbjct: 516 IELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIAELESQIHAAAGEKFNIQSPKQLGV 575
Query: 1136 ---KVLGIYNGRKT-----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+ L I G+KT +T + VL + + +++ R+L + K Y
Sbjct: 576 LLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEVPRLILQVRQLAKL--KSTYTDALPK 633
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I+ R+ +S++ T TGR++ +PNLQN IP+R S E E R
Sbjct: 634 LIHRTTGRVHTSFNQAITTTGRLSSSDPNLQN------IPIR--------SAEGREI--R 677
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A G +++ADY Q+E+RL+ HFS D+AL + D+ + AA+ + + +V
Sbjct: 678 KAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDIHAATAAAVNGIALEDVS 737
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R++AK + +GI+YGM L++ L++S EA F+D++ YP++R F + +
Sbjct: 738 GEMRRRAKAINFGILYGMSAFGLAKQLNISRGEAQTFIDTYFERYPSVRGFMDDTLVLAR 797
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
QG+VETL G R Y+P+I+S RR AER A+N +QGSAADI K AM + +
Sbjct: 798 EQGYVETLLGHRVYVPEISSSNGMRRAYAERTAINAPLQGSAADIIKVAMIHLHRRLRQE 857
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
P +ILQ+HDELI E ++M+ ME V L+VPL V + G++W
Sbjct: 858 APAAAIILQVHDELIVEAPVDQIDAVSAIMRQTMEQAVTLEVPLTVDIGSGHSW 911
>UniRef50_Q9HT80 Cluster: DNA polymerase I; n=76; Proteobacteria|Rep:
DNA polymerase I - Pseudomonas aeruginosa
Length = 913
Score = 200 bits (489), Expect = 2e-49
Identities = 130/416 (31%), Positives = 215/416 (51%), Gaps = 31/416 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ ++ +L+ E +G +VD L+ ++ + L+++A+ + G FN S K +
Sbjct: 512 DIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLG 571
Query: 1136 KVL----GIYNGRKT-----STRKSVLSS---HNTPISSIVMYWRKLNAILTKILYPLTE 1183
+L G+ KT ST ++VL+ + + ++M +R ++ + + L E
Sbjct: 572 AILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPE 631
Query: 1184 KACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
+ I RI +SY TGR++ +PNLQN IP+R T I
Sbjct: 632 Q--INPRTGRIHTSYHQAVAATGRLSSSDPNLQN------IPIR------TAEGRRI--- 674
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F A G +++ADY Q+E+R++ H ++D L + D+DV ++ AA VP +
Sbjct: 675 -RQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
V D R+ AK + +G+IYGM L++ + V EA ++D + YP + + + +
Sbjct: 734 VSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQ 793
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
QGFVETL GRR YLP+I S + R AER A+N +QG+AADI K AM ++++ +
Sbjct: 794 AAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQ 853
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R+ILQ+HDEL+ EV E + ++ +M L VPL V+ G W
Sbjct: 854 ESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNW 909
>UniRef50_Q59156 Cluster: DNA polymerase I; n=6; Clostridiales|Rep:
DNA polymerase I - Anaerocellum thermophilum
Length = 850
Score = 200 bits (488), Expect = 2e-49
Identities = 132/414 (31%), Positives = 215/414 (51%), Gaps = 29/414 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E ++ +L E G VD++ + + ++ + L+ + ++I G FN NS K ++
Sbjct: 451 SIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLS 510
Query: 1136 KVL------GIYNGRKT--STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L + KT ST VL I +++ +R ILT L +
Sbjct: 511 YILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQ-- 568
Query: 1186 CIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I R+ +++ T T TGR+ +PNLQN IP++Y ++I R
Sbjct: 569 AINPSSGRVHTTFIQTGTATGRLASSDPNLQN------IPVKY------DEGKLI----R 612
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
VF G V++ ADY Q+E+R+L H SED L K++VD+ AA V +V
Sbjct: 613 KVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVT 672
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R +AK + +GI+YG+ + L++ + +S EA+ F++ + YP ++ + + ++ +
Sbjct: 673 PEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFAR 732
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
GFV TL R+RY+ DI S + R AER A+N+ IQGS ADI K AM + +
Sbjct: 733 DNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSPADIMKLAMIKVYQKLKEN 792
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
N K ++ILQ+HDEL+ E K ++K ME+ V LKVPL V++K G W
Sbjct: 793 NLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAVRLKVPLVVEVKEGLNW 846
>UniRef50_A7SCG9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 425
Score = 200 bits (487), Expect = 3e-49
Identities = 112/327 (34%), Positives = 185/327 (56%), Gaps = 31/327 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ V++ L EL+G + RL ++ L+++A+++ + F+ S DVA+
Sbjct: 107 VEMPVMQCLVRMELNGFGFSEAECDRLKAILQAKLRTLEQEAYRLANHSFSLTSPDDVAR 166
Query: 1137 VLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSE--GDRI 1194
+ + S H P+ I++ WR++N LTK+++P+ + + RI
Sbjct: 167 ----------EVLERLKSLH--PLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRI 214
Query: 1195 MSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDN----TTSDEVIE---------F 1241
+ T T TGR++ +EPNLQNVPR F I L + ++ T E I+
Sbjct: 215 YPTSQTHTTTGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSGM 274
Query: 1242 NC----RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSD 1297
+C R F G V+++ADY QLE+RL+ H ++DS L +++ DVF+ IA S +
Sbjct: 275 SCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLAG 334
Query: 1298 VPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTK 1357
+ G VDD RQ+AKQ+CYGIIYG+G K L + L++ E +AS++++ F+ + IR + K
Sbjct: 335 LEPGSVDDKQRQRAKQICYGIIYGIGAKALGEQLELGEEDASMYIEKFKSRFSGIRRYLK 394
Query: 1358 SVIEECKRQGFVETLSGRRRYLPDITS 1384
S +E+C++ G+V T++ RRRYLP + S
Sbjct: 395 STVEQCRKTGYVTTITKRRRYLPAVNS 421
>UniRef50_Q3ABL3 Cluster: DNA polymerase I; n=1; Carboxydothermus
hydrogenoformans Z-2901|Rep: DNA polymerase I -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 831
Score = 199 bits (486), Expect = 4e-49
Identities = 133/436 (30%), Positives = 219/436 (50%), Gaps = 36/436 (8%)
Query: 1059 ISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQK 1116
+ ++ ++E Q + +E+ + +L+ E GI VD+E + + ++ + + L +
Sbjct: 412 LKKEMMKKIFEQEQERLFYEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIR 471
Query: 1117 KAFKICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSV-------LSSHNTPISSIVM 1165
+ + + G FN NS + + +L G+ +KT T S L + I I+
Sbjct: 472 EIYVLAGEEFNLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELLPFHEIIGKILN 531
Query: 1166 YWR--KLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSI 1223
Y + KL + T L PL + G + T T TGR+ EPNLQN+P +
Sbjct: 532 YRQLMKLKSTYTDGLMPLINERT----GKLHTTFNQTGTLTGRLASSEPNLQNIPIRLEL 587
Query: 1224 PLRYLTFDNTTSDEVIEFNCRNVFRAAPG-SVMVSADYCQLEMRLLTHFSEDSALTRIMK 1282
+ R +F +PG +VSADY Q+E+RLL HFSE+ L +
Sbjct: 588 GRKL----------------RKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQ 631
Query: 1283 SDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFM 1342
D+ + A+ V EV ++R AK + +GI+YG+ + L + L + A ++
Sbjct: 632 KGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDFGLGRDLKIPREVAGKYI 691
Query: 1343 DSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMI 1402
++ YP +R + ++ + +G+V TL GRRRY+P+++S + + ER A+NT +
Sbjct: 692 KNYFANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERTAMNTPL 751
Query: 1403 QGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTV 1462
QGSAADI K AM ++E + + K RL+L +HDEL+ EV +L+K VME V
Sbjct: 752 QGSAADIIKLAMINVEKELKARKLKSRLLLSVHDELVLEVPAEELEEVKALVKGVMESVV 811
Query: 1463 ELKVPLPVKLKCGYTW 1478
ELKVPL ++ G W
Sbjct: 812 ELKVPLIAEVGAGKNW 827
>UniRef50_Q12WZ6 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Methanococcoides burtonii DSM 6242|Rep: DEAD/DEAH box
helicase-like protein - Methanococcoides burtonii
(strain DSM 6242)
Length = 760
Score = 199 bits (486), Expect = 4e-49
Identities = 152/502 (30%), Positives = 255/502 (50%), Gaps = 43/502 (8%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
+++ +P +I YE+ GI E++ Q + L + NL+ + PT++GKTL+AE+
Sbjct: 3 IRELDIPRDIIGFYEDSGIKELYPPQAEAI--EMGLLEKKNLLAAIPTASGKTLLAELAM 60
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRV---EGFMGSQSPAGGMQNVHV 207
IK + E K + I+ P ++ EK + L+ GI+V G + S++ G+ ++ V
Sbjct: 61 IKAIREGGKALYIV-PLRALASEKFERFKE-LAPFGIKVGISTGDLDSRADWLGVNDIIV 118
Query: 208 AICTIEKANSMINRLLDNGN--IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKS 265
A T EK +S LL NG ++++ VVVDE+HLL +NRG LE+ +TK+ +
Sbjct: 119 A--TSEKTDS----LLRNGTSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPD- 171
Query: 266 DLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKS 325
+QV+ +SAT+ N +A WL A L ++ +RP L E L + + ++
Sbjct: 172 ---VQVVALSATVGNAREMADWLGAALVLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLE 228
Query: 326 SNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMIL 385
D + + L+TIK L+F ++ C A+ SS KI +
Sbjct: 229 K-------DDAVNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKI--------LDN 273
Query: 386 RSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIR 445
+ I E +E + + +L I GV +HHAGL + R ++E F+ I+
Sbjct: 274 DIMIKLAGIAEEVESTGETDTAI--VLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIK 331
Query: 446 VLVATSTLSSGVNLPARKVIIRS-----PVFQKQPINILSYKQMSGRAGRMGRDTKGESI 500
V+ +T TL++G+NLPAR+VIIRS F QPI +L YKQM+GRAGR D GES+
Sbjct: 332 VISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGESV 391
Query: 501 LICSEAEK--KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCT 558
L+ ++ ++ N + D + + S + T+ +L I + + ++QEL + T
Sbjct: 392 LLAKTYDEFAQLMENYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGAT 451
Query: 559 LLSAQKEILSQNLILEDTLKEL 580
+ Q++ ++ D L+ L
Sbjct: 452 FFAYQQDKWMLEEVINDCLEFL 473
>UniRef50_A0JWM3 Cluster: DNA polymerase I; n=3; Micrococcineae|Rep:
DNA polymerase I - Arthrobacter sp. (strain FB24)
Length = 955
Score = 198 bits (484), Expect = 7e-49
Identities = 147/490 (30%), Positives = 244/490 (49%), Gaps = 43/490 (8%)
Query: 1014 IKVDMKKYSGMDLAQ--LTIKVNNRQTKLKNLTLAQESCVKAWAIEMI-SEKQQNALYES 1070
I+ D + Y +LAQ L I+++ K L L+ + A A E++ + +AL
Sbjct: 479 IQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDGDDSAAAGELVHAAAVVHALSRY 538
Query: 1071 YQNAIN----------VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFK 1120
++ + +E+ V ++L++ EL GI +D + + L D+ D Q+ AF
Sbjct: 539 FEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDEQLADLAKVIDNAQELAFA 598
Query: 1121 ICGYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRK-----LNAIL- 1174
G+ N S K + VL ++ + K + S + T +S+ K L ++
Sbjct: 599 AIGHEVNLGSPKQLQTVL--FDELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMA 656
Query: 1175 ----TKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLT 1229
+K+ L +E RI ++Y+ TGRI+ + PNLQN IP+R
Sbjct: 657 HRESSKLRQMLESLKKSVAEDGRIHTTYAQNVAATGRISSNNPNLQN------IPIR--- 707
Query: 1230 FDNTTSDEVIEFNCRNVFRAAPG-SVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVF 1288
S+E R +F + G ++SADY Q+EMR++ H S D+ L + + D+
Sbjct: 708 -----SEE--GRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLH 760
Query: 1289 KSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERT 1348
+ + ++ VP +V +R K K + YG+ YG+ + LS+ L++S EA M +
Sbjct: 761 RFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDR 820
Query: 1349 YPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAAD 1408
+ A+R + + V+++ + GF T+ GRRRYLPD+TS R AER A+N+ IQGSAAD
Sbjct: 821 FGAVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAAD 880
Query: 1409 IAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPL 1468
I K AM + + + K R++LQ+HDEL+ EV + L+ M +L VPL
Sbjct: 881 IIKRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAADLSVPL 940
Query: 1469 PVKLKCGYTW 1478
V++ G +W
Sbjct: 941 DVQIGVGPSW 950
>UniRef50_A4FZE4 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Methanococcus maripaludis|Rep: DEAD/DEAH box
helicase domain protein - Methanococcus maripaludis
Length = 707
Score = 198 bits (484), Expect = 7e-49
Identities = 158/516 (30%), Positives = 256/516 (49%), Gaps = 37/516 (7%)
Query: 108 GITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK-----KVI 162
GITE+ Q L N +L N + PT++GKTL+ E+ I +L K K I
Sbjct: 11 GITELRPPQKKVLDNG-LLDKTKNFLVCIPTASGKTLIGEMAFINNLLNENKEPTGKKAI 69
Query: 163 IILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRL 222
I+P ++ EK + G+++ +G + + I T EK +S+I
Sbjct: 70 FIVPLKALATEKFEEFKEKYEKYGLKIGISIGDFDSKEDLNKYDLIITTSEKLDSLIRHK 129
Query: 223 LDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLE 282
+D ++D+ VVVDE+HL+GD RG LE++LT +K L +Q+IG+SAT+ N
Sbjct: 130 IDW--LKDVSCVVVDEIHLIGDGERGATLEVVLTILK------TLNLQIIGLSATVGNPG 181
Query: 283 TLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLE 342
LA WLNA+L I T+RPI L + EN N + E K N + + + ++
Sbjct: 182 ELADWLNAKLIIDTWRPIELRKATFFENVIEYTNSE---EKKVEN---EHKNPLNNLVID 235
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK 402
T KE S LIFC +K A+ E + + +E +LE+ + K
Sbjct: 236 TAKEEGSCLIFCSSKRNAVGEAKKHDVRKYLHPLEIEKLNEV------AEDLLESDSEGK 289
Query: 403 NSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPAR 462
+ L + G+ +HHAGLT +R I+E A+K+ ++V+ T TLS+G+NLP R
Sbjct: 290 TV-----KTLSDCVRKGIAFHHAGLTTKQRKIVETAYKNRIVKVICCTPTLSAGLNLPCR 344
Query: 463 KVIIRS-PVFQKQP---INILSYKQMSGRAGRMGRDTKGESILIC-SEAEKKIGFNLMMG 517
+ IIR F ++ I ++ +Q GRAGR G D GE I++ + + NL+ G
Sbjct: 345 RAIIRDVKRFSEKGMKFIPVMEIQQCIGRAGRPGLDPYGEGIIVLKKKGDITEALNLLNG 404
Query: 518 DLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQ-NLILEDT 576
D + + S I + + +L +IAS+I+ +K EL + T + Q + + +E+
Sbjct: 405 DPEHIYSGIANYKSLEKHVLGLIASDITRTKTELFKFLKNTFYAYQYDDFQKIKRTVEEI 464
Query: 577 LKELENYELIRIQNNHSENHYVATALGKACLSSSMA 612
L + +N +L+R +N E + + + +S S A
Sbjct: 465 LFDFKNAKLLRPENEILEVTALGCRVSELYISPSSA 500
>UniRef50_Q7TQ07 Cluster: DNA polymerase nu; n=8; Amniota|Rep: DNA
polymerase nu - Mus musculus (Mouse)
Length = 864
Score = 198 bits (482), Expect = 1e-48
Identities = 135/446 (30%), Positives = 234/446 (52%), Gaps = 40/446 (8%)
Query: 1068 YESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFN 1127
Y +Q +E+ ++ IL+ E H I VDKE + R + L+++A + G F
Sbjct: 417 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFL 476
Query: 1128 FNSSKDVAKVL------GIYNGRK----------TSTRKSVLSSHNT--PISSIVMYWRK 1169
S+ + ++L + + RK ST +++L+S P+ +++ +R+
Sbjct: 477 IMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ 536
Query: 1170 LNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNV---PRTFSIPL 1225
++ I + + L Y + I S+++ T T TGR++ PN+Q + P S P
Sbjct: 537 VHKIKSTFIDGLLA----YMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPW 592
Query: 1226 RYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDV 1285
+ +E + + R +F ++ G ++AD+ Q+E+R+L H S D L ++ +
Sbjct: 593 NF----KGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESE 648
Query: 1286 --DVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMD 1343
DVF ++ + W D+P V R++ K++ Y ++YG G + L+ L V+ +EA+ F++
Sbjct: 649 RDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLE 708
Query: 1344 SFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQ 1403
F + Y I+ F ++VI +C G+V ++ GRRR LP I + R AERQAVN ++Q
Sbjct: 709 RFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQ 768
Query: 1404 GSAADIAKSAMCSIEDGI-NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED-- 1460
GSAAD+ K AM I + S RL+ Q+HDEL++EV +T F +L++ +ME
Sbjct: 769 GSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQ 828
Query: 1461 -----TVELKVPLPVKLKCGYTWGAL 1481
++L+VPL V L G +WG L
Sbjct: 829 QVQTLELQLQVPLKVNLSVGRSWGHL 854
>UniRef50_Q5HCC8 Cluster: DNA polymerase I; n=12; Rickettsiales|Rep:
DNA polymerase I - Ehrlichia ruminantium (strain
Welgevonden)
Length = 865
Score = 197 bits (481), Expect = 2e-48
Identities = 133/418 (31%), Positives = 219/418 (52%), Gaps = 37/418 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E ++ +L N E GI++D ++ +L + D VL++K +K+ G FN SS+ ++
Sbjct: 469 IEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSRQLST 528
Query: 1137 VL----GIYNGRKTS-----TRKSVLSS---HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L GI G+K S T VL + I+ ++ WR + L ++
Sbjct: 529 ILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQ 588
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
I + R+ + YS T T TGR++ PNLQN IP+R S+E
Sbjct: 589 --IDNNTSRVHTFYSMTSTVTGRLSSSNPNLQN------IPIR--------SEEGNAI-- 630
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
RN F A G ++SADY Q+E+R++ H + A D D+ A + +
Sbjct: 631 RNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNTQN--I 688
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D LR+KAK + +GIIYG+ L++ L ++ EAS ++++ ++YP I+ + + +
Sbjct: 689 DKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYA 748
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ G+ T+ GR+ ++ DI S+ + RN +ER AVN +QG++ADI K +M + D + +
Sbjct: 749 RTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHLFDRLKT 808
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGAL 1481
+ILQ+HDEL++EV E + + L+K VME V+L VPL V + G WG L
Sbjct: 809 ----GYMILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVKLSVPLKVDITIGDNWGNL 862
>UniRef50_UPI00015386DF Cluster: afuHEL308 HELICASE; n=2;
Archaeoglobus fulgidus|Rep: afuHEL308 HELICASE -
Archaeoglobus fulgidus
Length = 702
Score = 197 bits (480), Expect = 2e-48
Identities = 148/487 (30%), Positives = 256/487 (52%), Gaps = 42/487 (8%)
Query: 105 EERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIII 164
+E GI E+F Q + + +F NL+ + PT+AGKTL+AE+ ++ ++ K + ++
Sbjct: 19 KEEGIEELFPPQAEAV---EKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75
Query: 165 LPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLL 223
P ++ EK + G+R+ G +S + + + + T EKA+S+I
Sbjct: 76 -PLRALAGEKYESFKK-WEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA 133
Query: 224 DNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLET 283
I+ + +VVDE+HLL + RG LE+L+TK++ + + ++VIG+SAT PN+
Sbjct: 134 SW--IKAVSCLVVDEIHLLDSEKRGATLEILVTKMR----RMNKALRVIGLSATAPNVTE 187
Query: 284 LATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLET 343
+A WL+A+ +++ +RP+PL E L E LE + S ++ E
Sbjct: 188 IAEWLDADYYVSDWRPVPLVEGVLCEGT---------LELFDGAFSTSRRVKFEELVEEC 238
Query: 344 IKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKN 403
+ E VL+F T+ E A LS+ K + +E + +A+ L+
Sbjct: 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKY--------------VENEGLEKAI--LEE 282
Query: 404 SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK 463
+ + + L + + G +HHAGL +R ++E AF+ G I+V+VAT TL++GVNLPAR+
Sbjct: 283 NEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR 342
Query: 464 VIIRSPV-FQ--KQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGF-NLMMGDL 519
VI+RS F + I + YKQM+GRAGR G D +GE+I+I + +++I + G+
Sbjct: 343 VIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEP 402
Query: 520 DPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKE 579
+ + S + + L II + + +EL + T Q EI S + LE +++
Sbjct: 403 ERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEI-SLSYELERVVRQ 461
Query: 580 LENYELI 586
LEN+ ++
Sbjct: 462 LENWGMV 468
>UniRef50_A0LCQ8 Cluster: DNA polymerase I; n=1; Magnetococcus sp.
MC-1|Rep: DNA polymerase I - Magnetococcus sp. (strain
MC-1)
Length = 911
Score = 197 bits (480), Expect = 2e-48
Identities = 131/415 (31%), Positives = 213/415 (51%), Gaps = 30/415 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E ++ +L+ E G++VD++++S + D + L ++ ++ G FN NS++ +
Sbjct: 512 IERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELAGEVFNVNSTQQLGH 571
Query: 1137 VL----GIYNGRKT----STRKSVLSS---HNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+L GI G++T ST SVLS I V+ +R L + + L A
Sbjct: 572 ILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALV--A 629
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I+ R+ +SY+ T TGR++ +PNLQN IP+R T I R
Sbjct: 630 LIHPYTGRVHTSYNQAVTLTGRLSSSDPNLQN------IPIR------TEEGRAI----R 673
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A G +++ADY Q+E+R+L H S L + +D+ + AA VP +V
Sbjct: 674 TAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVT 733
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+ R+ AK + +G++YGM L++ L + EA +MD + Y +R + I + +
Sbjct: 734 GEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRDAR 793
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
GFVETL GRR + DI + S R AER A+N +QGSA+D+ K AM + + +
Sbjct: 794 AHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDLIKLAMIRLHGALQAG 853
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
K R++LQ+HDEL+ EV + + +++S ME + L +PL V + G WG
Sbjct: 854 GFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGVMTLSIPLVVDMGVGQNWG 908
>UniRef50_Q5CT71 Cluster: DEXDc+HELICc, mus308/POLQ like SFII DNA
helicase, no polymerase domain; n=2;
Cryptosporidium|Rep: DEXDc+HELICc, mus308/POLQ like SFII
DNA helicase, no polymerase domain - Cryptosporidium
parvum Iowa II
Length = 1154
Score = 197 bits (480), Expect = 2e-48
Identities = 107/274 (39%), Positives = 165/274 (60%), Gaps = 11/274 (4%)
Query: 71 EGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCA 130
+ L +V + + L+ G+ + K Y E+G+ ++DWQ C+ VL
Sbjct: 98 DNNLFIQNKVDSFENQVGNSLQSLGIDERLVKYYSEKGLRNLYDWQYECITQPGVL-QGR 156
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKM-FYLQNILSSSGIRV 189
NLVYSAPTS GKTLV+E+L K VLE + +++ PFVS+V EK Y + G+R+
Sbjct: 157 NLVYSAPTSGGKTLVSELLMYKRVLEGGRAALVVFPFVSLVSEKRDSYYKAGGEVCGLRI 216
Query: 190 EGF-MGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNI-EDLGAVVVDELHLLGDQNR 247
F GS+SP + + + TIEKAN++I+ + +G + + LG ++VDELHLLGD+ R
Sbjct: 217 SEFHYGSKSPL--FEEFDIGVATIEKANALISYYIQHGILFKRLGIIIVDELHLLGDEQR 274
Query: 248 GYILELLLTKIKYVTSKSD--LLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEY 305
GYILE++LTK++ ++ IQ++GMSATLPNL + WL+A ++ + FRP+PL E+
Sbjct: 275 GYILEVMLTKVRLLSKLQGEGRTIQIVGMSATLPNLRDIGLWLDAVVYQSNFRPVPLREH 334
Query: 306 CLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKI 339
+++ K Y K GK + S G S D++ K+
Sbjct: 335 IVIKGKAYIKPGK---DQNKSTLGSSVQDTLSKV 365
Score = 136 bits (330), Expect = 3e-30
Identities = 146/526 (27%), Positives = 252/526 (47%), Gaps = 83/526 (15%)
Query: 328 YGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEG--------- 378
Y + +L I E +K+G SVL+FC +K ES A ++ + CEG
Sbjct: 394 YPIVDMSELLVIGWEALKKGESVLVFCPSKYSVESTALFFANCIKRQFCEGIDIENCSNR 453
Query: 379 SEFGMILRSQLNSEHIL-EALEQ---LKNSPVGLDQILQKTISFGVGYHHAGLTLDERDI 434
+ LRS ++L E + Q L + + L I G+G+HH+GL+ ER I
Sbjct: 454 QQIMQSLRSVERQRYMLAEEIRQNSSLSKRSIQNNNTLIDCIVKGIGFHHSGLSHIERRI 513
Query: 435 IEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMG-R 493
+E +++G + +L ATSTL++GVNLP+++VI R K + + YKQMSGRAGR G +
Sbjct: 514 VEKGYRNGILSLLTATSTLAAGVNLPSKRVIFRGINIGKSFLTCVDYKQMSGRAGRAGQK 573
Query: 494 DTKGESILICSEA----------EKKIGFNLMMGDLDPVKSCIETKEK-YMRAILEIIA- 541
GES ++ +E E + L+ D+ P+ S T R ILEI+A
Sbjct: 574 GAFGESFILVNETLSQPGREVSEEVENALGLITADMKPLMSSFFTNTNGITRLILEILAV 633
Query: 542 -----SNISCSKQE------------LLLYTDCTLLSAQKEI---LSQNLILE-DTLKEL 580
NIS + +E L L T+ TL+S Q ++ LS + D L+
Sbjct: 634 LFEFDQNISVNNKEKIPDKGSHTGSILDLLTESTLMSYQIKLYNDLSHEYLKNIDALERA 693
Query: 581 ENYELIR--IQNNHSENHYVA----------TALGKACLSSSMAPNDGLTLFCELQKARQ 628
+Y L + I N + + ++ T LGKA +SS ++P+ GL L+ EL++ +
Sbjct: 694 LSYLLEKKMIMNREKKTNPISIGGYTLNCCCTQLGKAIVSSGLSPSTGLELYDELRRNME 753
Query: 629 CLVLETDLHLIYLVTPY------------SVSSQ-WGNIDWLHLLNLWESLT----KAMK 671
L ++ YLVTP+ S S+Q + +DW L + + +T ++
Sbjct: 754 STFLGDLTYMSYLVTPFPPNEISNGSKPTSTSTQPFFRLDWKVLYDNIKEMTILERHSLI 813
Query: 672 KVG-ELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQ 730
++G +L + + + C L K + L H+R + + ++ ++N + + +KF+
Sbjct: 814 RLGFDLEQISWASQL-CEDNLPPKLKEPEFLRRHQRLFASQIMKSILNGLSTEVILSKFK 872
Query: 731 CARGFLQGLQQA-SGTFAGMVT--AFCKQLGWKSMEILISQFQDRL 773
++ LQQ +G + ++ +FC+ + W +M+I+ + +L
Sbjct: 873 FIS--VRDLQQLHTGVLSMCISCISFCQNMNWSNMQIVFQSYLRQL 916
>UniRef50_Q8A2P5 Cluster: DNA polymerase I; n=25;
Bacteroidetes/Chlorobi group|Rep: DNA polymerase I -
Bacteroides thetaiotaomicron
Length = 949
Score = 196 bits (479), Expect = 3e-48
Identities = 132/417 (31%), Positives = 212/417 (50%), Gaps = 35/417 (8%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ ++ +L N E +G+++D E + + ++++ +++ G FN S K V
Sbjct: 548 DIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVG 607
Query: 1136 KVLG-----IYNGRKTSTRKSVLSS-------HNTPISSIVMYWRKLNAILTKILYPLTE 1183
+VL I +KT T + V S H P+ ++ R L +L + L +
Sbjct: 608 EVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPQ 667
Query: 1184 KACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
I R+ +S++ T T TGR++ PNLQN IP+R + E+
Sbjct: 668 --LINPRTGRVHTSFNQTVTSTGRLSSSNPNLQN------IPIR-----DENGKEI---- 710
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F G + SADY Q+E+R++ H SED + S+ D+ + AA + +
Sbjct: 711 -RKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKD 769
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
VD D+R+KAK +GIIYG+ L++ ++V EA +D + TYP+++ + + I+
Sbjct: 770 VDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQI 829
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
+ +G+VET+ R+R+LPDI S R AER A+N IQGSAADI K AM I
Sbjct: 830 AQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQ 889
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWG 1479
+ + ++ILQ+HDEL + V K R ++ ME + VPL K CG WG
Sbjct: 890 TEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPL--KADCG--WG 942
>UniRef50_Q5FIV7 Cluster: DNA polymerase I; n=22; Lactobacillales|Rep:
DNA polymerase I - Lactobacillus acidophilus
Length = 886
Score = 196 bits (478), Expect = 4e-48
Identities = 135/451 (29%), Positives = 231/451 (51%), Gaps = 42/451 (9%)
Query: 1045 LAQESCV----KAWAIEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELV 1100
LA + CV K ++ + E +Q+ L+E+ +EI ++L+ E++GI V+ +
Sbjct: 457 LAAKVCVIEKLKPELLKQLKEHEQDDLFET------IEIPTARVLAKMEINGIKVEASTL 510
Query: 1101 SRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL------GIYNGRKT--STRKSV 1152
L + L+ K +K G FN NS K + +L + KT ST V
Sbjct: 511 IELQNEFAVKLKELEDKIYKQAGEEFNLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEV 570
Query: 1153 LSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITM 1209
L T PI S ++ +R++ I + + L + + R+ + Y T T TGR++
Sbjct: 571 LDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLD---VIQRDGRVHTRYLQTLTATGRLSS 627
Query: 1210 HEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLT 1269
+PNLQN+P T ++E + + + P + S DY Q+E+R+L
Sbjct: 628 VDPNLQNIP--------------TRTEEGKQIR-KAFVPSEPDGYIFSCDYSQVELRVLA 672
Query: 1270 HFSEDSALTRIMKSDVDVFKSIAAS--WSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTL 1327
H S D + K+ D+ A D P+ EV +R+ AK + +GI+YG+ + L
Sbjct: 673 HVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPD-EVTPLMRRHAKAVNFGIVYGISDYGL 731
Query: 1328 SQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHIT 1387
S++L +S A F+D++ YP I+ + ++E + +G+ ET+ RRRYLPDI +
Sbjct: 732 SKNLGISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKF 791
Query: 1388 SRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNK 1447
+ R+ AER A+N+ IQGSAADI K AM +++ ++ + K ++++Q+HDELI++V +
Sbjct: 792 TVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDEL 851
Query: 1448 SRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
++ +M+ V+L VPL G+ W
Sbjct: 852 ETIKKIVPEIMQSAVKLDVPLIADSGWGHNW 882
>UniRef50_Q7QVS5 Cluster: GLP_302_20634_23333; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_302_20634_23333 - Giardia lamblia
ATCC 50803
Length = 899
Score = 195 bits (476), Expect = 7e-48
Identities = 168/541 (31%), Positives = 267/541 (49%), Gaps = 43/541 (7%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
+++ SAPTSAGK+LVA I ++ + +K II +PFV++ E + L++I+ G V
Sbjct: 139 HILISAPTSAGKSLVAFIYILRCLSLCKKSAIIAVPFVALADELVGKLRDIIPP-GCGVV 197
Query: 191 GFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGD-QNRG 248
G G Q P + +CT EKA + ++ L G + LG +V DE+HL+GD R
Sbjct: 198 GITGMKQVPRVSGSRPIIYVCTFEKAILVFSKFLQKGLVAHLGLLVFDEIHLIGDGSTRA 257
Query: 249 YILELLLTKIKYV--TSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYC 306
LEL ++++ + T++ + +++GMSATL N+ L WL ++ FRPI L+EY
Sbjct: 258 CKLELFISQLILLEKTARIPICYRIVGMSATLSNISDLQRWLGCYVYECNFRPISLQEYV 317
Query: 307 LVENKYYDKNGKYI-LEAK------SSNYGVSCNDSVLK-ICLETIKEGCSVLIFCMTKN 358
LV+ Y N + LE + S V N S L I L +K ++IF TK+
Sbjct: 318 LVDRNLYLFNAQTKKLEPRGQILVNSPITKVKLNISPLNTISLIALKP---LIIFVTTKH 374
Query: 359 R----CESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
SLA+++ ++F E + R+QL +E L+ L + +P+
Sbjct: 375 ETVDVANSLAEIIRTSFPSPPAEL----IAKRTQLITE--LKQLGDVSWAPL-------- 420
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQ 474
IS GV YH++ L ER +IE AF + I LVAT+T+S+GVNLPAR VIIR
Sbjct: 421 -ISAGVMYHNSSLASLERTLIEEAFSNSVIHTLVATTTISAGVNLPARSVIIRYQKIGSI 479
Query: 475 PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR 534
++ Y+QM GRAGRMG T G S L+ +E +KK + + D V + E +
Sbjct: 480 ELDGAKYRQMIGRAGRMGLATSGHSFLLLTERDKKEVLAKLSAESD-VVTATEQLLSELH 538
Query: 535 AILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLI-LEDTLKELENYELIRIQN--- 590
I I++S S ++ C + +E + L ++ +LK + +
Sbjct: 539 TIRPILSSLSKSSISAEVILNSCIYDVSVREFIESTLAHVQGSLKHENVVRALEVLQSLG 598
Query: 591 --NHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR-QCLVLETDLHLIYLVTPYSV 647
+ S T G+AC+ + + L ++ LQ + + L++ D H+ P
Sbjct: 599 LVSFSNGIVRLTPRGRACVDAGTDIYNSLVIYTYLQTFQTEGLLVGNDYHICCTTIPIYA 658
Query: 648 S 648
S
Sbjct: 659 S 659
>UniRef50_Q7Z5Q5 Cluster: DNA polymerase nu; n=21; Tetrapoda|Rep: DNA
polymerase nu - Homo sapiens (Human)
Length = 900
Score = 195 bits (476), Expect = 7e-48
Identities = 139/488 (28%), Positives = 254/488 (52%), Gaps = 44/488 (9%)
Query: 1029 LTIKVN----NRQTKLKNLTLAQE-SCVKAWAIEMISEKQQNALYESYQNAINVEIKVLK 1083
+T+KVN N + N + + + +++ S+ + L++ ++ +E+ ++
Sbjct: 377 ITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRT---LELPLIP 433
Query: 1084 ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----- 1138
IL+ E H I V+KE + + + L+++A + G F S+ + ++L
Sbjct: 434 ILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLK 493
Query: 1139 -GIYNGRKT----------STRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKA 1185
+ + R + ST ++VL++ P+ I++ +R+++ I + + L A
Sbjct: 494 LHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLL--A 551
Query: 1186 CIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTS--DEVIEFNC 1243
C+ +G + T T TGR++ PN+Q + + P++ T N D+++ +
Sbjct: 552 CM-KKGSISSTWNQTGTVTGRLSAKHPNIQGISKH---PIQITTPKNFKGKEDKILTISP 607
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDV--DVFKSIAASWSDVPEG 1301
R +F ++ G ++AD+ Q+E+R+LTH S D L ++ + DVF ++ + W DVP
Sbjct: 608 RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 667
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
+V R++ K++ Y ++YG G + L+ L V EA+ F++SF + Y I+ F ++ I
Sbjct: 668 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIA 727
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
+C + G V ++ GRRR LP I +H R AERQAVN ++QGSAAD+ K AM + +
Sbjct: 728 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAV 787
Query: 1422 -NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED-------TVELKVPLPVKLK 1473
S RL+ Q+HDEL++EV + +L++ ME ++L+VPL V L
Sbjct: 788 AASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLS 847
Query: 1474 CGYTWGAL 1481
G +WG L
Sbjct: 848 AGRSWGHL 855
>UniRef50_Q9S1G2 Cluster: DNA polymerase I; n=23; Bacteria|Rep: DNA
polymerase I - Rhizobium leguminosarum
Length = 1016
Score = 195 bits (476), Expect = 7e-48
Identities = 134/421 (31%), Positives = 218/421 (51%), Gaps = 37/421 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E +L +L+ E GI VD++++SRL ++ L+ + + + G FN S K +
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGD 669
Query: 1137 VL----GIYNGRKT-----STRKSVL---SSHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L G+ G KT ST VL ++ + ++ WR++ + K Y
Sbjct: 670 ILFGKMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKL--KSTYTDALP 727
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
++ E R+ +SYS T TGR++ EPNLQN IP+R T I
Sbjct: 728 GYVHPETKRVHTSYSLASTTTGRLSSSEPNLQN------IPVR------TAEGRKI---- 771
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F + PG ++SADY Q+E+R+L H +E LT+ + VD+ A+ VP +
Sbjct: 772 RTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGM 831
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
++R++AK + +GIIYG+ L+ L + EA ++ + +P IR + +S
Sbjct: 832 PGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMA 891
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ +G+VET+ GRR P+I S S R ER A+N IQGSAAD+ + AM IE +
Sbjct: 892 RDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPALVE 951
Query: 1424 FN--PKPRLILQMHDELIYEVHETNKSRFISLMKSVMED----TVELKVPLPVKLKCGYT 1477
+ R++LQ+HDELI+EV + + + + ++ SVME+ +E++VPL V +
Sbjct: 952 VGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDARAATN 1011
Query: 1478 W 1478
W
Sbjct: 1012 W 1012
>UniRef50_Q8YEQ3 Cluster: DNA POLYMERASE I; n=14; Bacteria|Rep: DNA
POLYMERASE I - Brucella melitensis
Length = 994
Score = 195 bits (475), Expect = 9e-48
Identities = 129/419 (30%), Positives = 215/419 (51%), Gaps = 35/419 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E ++ +L+ E GI VD++++SRL D+ + + + + + G F S K +
Sbjct: 590 LERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGD 649
Query: 1137 VL----GIYNGRKT-----STRKSVL---SSHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L G+ KT ST VL ++ P+ ++ WR+L + K Y
Sbjct: 650 ILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKL--KSTYTDALP 707
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
I + R+ +SY+ T TGR++ +PNLQN IP+R T I
Sbjct: 708 GFINPQTKRVHTSYAMASTSTGRLSSSDPNLQN------IPVR------TAEGRKI---- 751
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F A PG+ ++SADY Q+E+R+L H ++ + L + +D+ A+ VP +
Sbjct: 752 RTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGM 811
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
++R++AK + +GIIYG+ L+ L + EA ++ ++ +P I+ + ++
Sbjct: 812 PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 871
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ G+VET+ GRR + PDI + R ER A+N IQG+AADI + AM +ED +
Sbjct: 872 REHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAK 931
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED----TVELKVPLPVKLKCGYTW 1478
N R++LQ+HDELI+EV E + I +++ VME+ V L VPL V + + W
Sbjct: 932 ENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990
>UniRef50_A7HD60 Cluster: DNA polymerase I; n=3; Cystobacterineae|Rep:
DNA polymerase I - Anaeromyxobacter sp. Fw109-5
Length = 899
Score = 194 bits (474), Expect = 1e-47
Identities = 132/414 (31%), Positives = 210/414 (50%), Gaps = 29/414 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
+VE ++ +L E GI+VD+ + + + + L+ + G+ FN S++++A
Sbjct: 500 DVERPLVPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPFNIASTRELA 559
Query: 1136 KVL------GIYNGRKT--STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+VL + KT ST + VL + + +V+ R L + + L +
Sbjct: 560 QVLFTELALPVLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQ-- 617
Query: 1186 CIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ RI +++ TGR++ +PNLQN+P + R R
Sbjct: 618 LVDPRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRI----------------R 661
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A PG ++SADY Q+E+R+L H+S+D AL + DV AA V GEV
Sbjct: 662 AAFVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVT 721
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D+R+ AK L +GI YG+ LSQ LD+ EA +D + Y +R + + +E+ +
Sbjct: 722 SDMRRIAKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVEDAR 781
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
G TL GR R +P+I + + RN AER A+NT IQG+AADI K AM + D +
Sbjct: 782 ATGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVHDALAGD 841
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ RL+LQ+HDEL+ EV E + +L++ M +LKVPL V++ G++W
Sbjct: 842 ARRARLLLQVHDELVLEVPEDELAPVEALVRREMGGAAQLKVPLDVEVGVGHSW 895
>UniRef50_Q97VY9 Cluster: Putative ski2-type helicase; n=6;
Sulfolobaceae|Rep: Putative ski2-type helicase -
Sulfolobus solfataricus
Length = 708
Score = 194 bits (474), Expect = 1e-47
Identities = 155/512 (30%), Positives = 266/512 (51%), Gaps = 41/512 (8%)
Query: 91 LKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILT 150
+ D LP + + RGI ++ Q + K L D L+ ++PT +GKTL+AE+
Sbjct: 3 IDDLKLPSNVIDIIKNRGIKKLNPPQTEAV--KKGLLDGNRLLLTSPTGSGKTLIAEMGI 60
Query: 151 IKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAI 209
I +L+ K I + P ++ EK ++ S G +V G + ++N + I
Sbjct: 61 ISFLLKNGGKAIYVTPLRALTNEKYLTFKD-WESIGFKVAMTSGDYDTDDAWLKNYDIII 119
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLI 269
T EK +S+ D N + V+DELH L D RG ++E + + K + +LL
Sbjct: 120 TTYEKLDSLWRHRPDWLN--EANYFVLDELHYLNDPERGPVVESVTIRAK----RRNLL- 172
Query: 270 QVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKY-ILEAKSSNY 328
+SAT+ N + +A WL AE T +RP+PL E + + K +Y IL ++
Sbjct: 173 ---ALSATISNYKQIAKWLGAEPVATNWRPVPLMEGVMYPER---KKKEYTILFRDNTAR 226
Query: 329 GVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ 388
V +D+++ L+++ + VL+F ++ ES A +++ + L +
Sbjct: 227 KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVS---------LDEK 277
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
SE IL+ L+ ++ ++L+ IS GV YHHAGL+ RDIIE +F+ I+V+V
Sbjct: 278 AISE-ILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIV 336
Query: 449 ATSTLSSGVNLPARKVII-------RSPVFQKQPINILSYKQMSGRAGRMGRDTKGESIL 501
AT TL++GVNLPAR VII R V I ++ YKQMSGRAGR G D GESI+
Sbjct: 337 ATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESII 396
Query: 502 ICSEAE--KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTL 559
+ + E ++ ++ D++P++S + ++ + +L I+++ S S+++L + +L
Sbjct: 397 VVRDKEDVDRVFKKYILSDVEPIESKLGSERAFYTFLLGILSAEGSLSEKQLEAFAYESL 456
Query: 560 LSAQKEILSQNLILEDTLKELENYELIRIQNN 591
L+ K ++ ++ + ++ L + IR +NN
Sbjct: 457 LA--KSVV--DVYFDRAIRWLSEHSFIREENN 484
>UniRef50_A5KKE9 Cluster: Putative uncharacterized protein; n=3;
Clostridiales|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 871
Score = 194 bits (472), Expect = 2e-47
Identities = 136/443 (30%), Positives = 221/443 (49%), Gaps = 34/443 (7%)
Query: 1050 CVKAWAIEMISEKQQNALYESYQNAINVEIKVLKILSNCELH--GIVVDKELVSRLLTDV 1107
C +A+ + N L E+ + + EI++ + + E+ G+ V+ E + +L D
Sbjct: 445 CYEAYTAFAAASVLDNKLKEAEMDRLFYEIEMPLVFTLYEMESAGVKVEAEAL-KLYGDQ 503
Query: 1108 RDSQDV-LQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLS--SH 1156
Q + L+ + +++ G FN NS K + +L + + +KT ST VL +
Sbjct: 504 LGEQIIQLEHQIYEMAGEEFNINSPKQLGVILFEKLNMPHAKKTKTGYSTAADVLEKLAE 563
Query: 1157 NTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQ 1215
PI S ++ +R+L + + L A + RI ++ T T TGR++ EPNLQ
Sbjct: 564 EYPIVSKILEYRQLAKLKSTYADGL---AVFIGDDGRIHGKFNQTVTATGRLSSTEPNLQ 620
Query: 1216 NVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDS 1275
N+P + R + R VF V V ADY Q+E+R+L H S D
Sbjct: 621 NIPVRMELG-RMI---------------RKVFVPKEDCVFVDADYSQIELRVLAHCSGDE 664
Query: 1276 ALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSE 1335
L + + D+ + A+ P EV D R+ AK + +GI+YG+ + LS L ++
Sbjct: 665 QLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSMDLSITR 724
Query: 1336 MEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAER 1395
EA+ +++ + TYP ++ F +E K +G+ TL GRRR +P++ S +RN ER
Sbjct: 725 KEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKSSNFMQRNFGER 784
Query: 1396 QAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMK 1455
A+N IQG+AADI K AM + + N K R+ILQ+HDEL+ E + +++
Sbjct: 785 VAMNAPIQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILR 844
Query: 1456 SVMEDTVELKVPLPVKLKCGYTW 1478
ME+ V+L VPL V + G W
Sbjct: 845 DKMENAVKLSVPLIVDMHTGKNW 867
>UniRef50_Q1D7R1 Cluster: DNA polymerase I; n=1; Myxococcus xanthus DK
1622|Rep: DNA polymerase I - Myxococcus xanthus (strain
DK 1622)
Length = 908
Score = 193 bits (471), Expect = 3e-47
Identities = 127/416 (30%), Positives = 212/416 (50%), Gaps = 30/416 (7%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
A ++E+ +L +L+ E G+++D +SR V + + K+ ++ G FN S+
Sbjct: 508 ARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAGREFNIGSNPQ 567
Query: 1134 VAKVL------GIYNGRKT--STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTE 1183
+ +VL I KT S + VL S P+ ++ +R L+ + K Y T
Sbjct: 568 LVEVLFTELKLPIIKRGKTGPSADQEVLEKLSEEHPLPGAIIEYRSLSKL--KSTYLDTL 625
Query: 1184 KACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
+ ++G RI ++Y T TGR++ +PNLQN+P + E+
Sbjct: 626 PTLVAADG-RIHTTYHQAATATGRLSSTDPNLQNIPVRTDL-----------GREI---- 669
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F AA G +VSADY Q+E+RLL H + D L D D+ AA V + +
Sbjct: 670 -RRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQ 728
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
VD + R+ AK + +GI YG+ L L +++ A ++ + Y IR + + ++
Sbjct: 729 VDREQRRVAKMVNFGIAYGLSPHGLGARLGIAQDVARDIIERYFTRYAGIRRYLEETVDR 788
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
++ G+VETL GRRRY+ D+ S AER A+N IQG+AAD+ K AM ++++ +
Sbjct: 789 ARKTGYVETLYGRRRYMADLNSKNRGVAQAAERAAINMPIQGTAADLIKKAMLAVDEALT 848
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ + R++LQ+HDEL++E + + +L M +LKVPL V++ G +W
Sbjct: 849 AQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVADLKVPLKVEVGAGRSW 904
>UniRef50_Q8ZY90 Cluster: ATP-dependent, DNA binding helicase; n=4;
Pyrobaculum|Rep: ATP-dependent, DNA binding helicase -
Pyrobaculum aerophilum
Length = 704
Score = 193 bits (471), Expect = 3e-47
Identities = 148/510 (29%), Positives = 260/510 (50%), Gaps = 39/510 (7%)
Query: 105 EERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIII 164
+ERG+ E+F Q+ + +FD NL+ T++GK+L+AE+ ++KT LE K +
Sbjct: 17 KERGVRELFPPQVEAV--KAGIFDGVNLLLCTATASGKSLLAEVASVKTALEG-KMALYA 73
Query: 165 LPFVSIVREKMFYLQNI--LSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRL 222
+P ++ +EK+ + L+ GI F S + V + T EK +S++
Sbjct: 74 VPLKALAQEKLLHFSYYGKLARVGISTGDF---DSEDKRLYEYDVVVVTYEKLDSLLRHR 130
Query: 223 LDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLE 282
+ +G VVVDE+H LGD RG +LE ++ K++++ L Q IG+SAT+ N E
Sbjct: 131 --PSWLGSVGLVVVDEIHYLGDPKRGPVLESIIAKVRHL----GLRTQFIGLSATVGNAE 184
Query: 283 TLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLE 342
+A+WL A L +++RP+PL E YY G I A S + ++ + + ++
Sbjct: 185 EVASWLGARLVSSSWRPVPLRE-----GVYY---GGKIYFADGSKKSLGSGEAEIALAID 236
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK 402
+ G L+F +++ +A+ ++ + + +Q + ++ A
Sbjct: 237 AVAGGGQALVFTNSRSSTVRIAKAIAQA---VAAHPARLINPAEAQSLANEVINA----S 289
Query: 403 NSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPAR 462
S + + + L I+ GV +H+AGL L+ R ++E F+ G I+V+V+T+TL++GVNLPAR
Sbjct: 290 TSKI-IGRELADLIARGVAFHNAGLELEVRRLVEEGFRRGVIKVVVSTTTLAAGVNLPAR 348
Query: 463 KVIIR-----SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC-SEAE-KKIGFNLM 515
+V+I PV ++ I +L Y+QM+GRAGR G D GE++++ S E + +
Sbjct: 349 RVVIADYERFDPVLGREEIPVLEYRQMAGRAGRPGMDPYGEAVIVARSRGEVDYLMERYL 408
Query: 516 MGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILED 575
G ++ VKS I + +L + + S EL+ + TL Q + + +L
Sbjct: 409 RGRVEDVKSHILSAPNLRSHVLGAVGGGYAKSIDELVDFFSNTLGYHQVKTSLKTALLRS 468
Query: 576 TLKELENYELIRIQNNHSENHYV-ATALGK 604
+ + ELI+ + V AT LG+
Sbjct: 469 KVASAVD-ELIKWGFMERDGELVYATELGR 497
>UniRef50_Q8F071 Cluster: DNA polymerase I; n=4; Leptospira|Rep: DNA
polymerase I - Leptospira interrogans
Length = 917
Score = 193 bits (470), Expect = 4e-47
Identities = 130/414 (31%), Positives = 216/414 (52%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L+ E GI +D L D L+ + + G FN S+K++ K
Sbjct: 518 MEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQK 577
Query: 1137 VL------GIYNGRKT--STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
+L I +T ST VL PI ++ +RK + + + L +
Sbjct: 578 ILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKM-- 635
Query: 1187 IYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVP-RTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ + RI +SY+ T TGR++ +PNLQN+P R L F ++D I
Sbjct: 636 VNPKTGRIHTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEI----- 690
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
+S DY Q+E+R++ H S+D A+ +D+ K AA+ VPE +V
Sbjct: 691 -----------LSLDYSQIELRIMAHISKDPAMLEAYNHGLDIHKRTAAALYGVPETDVT 739
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
++R KAK + + +IYG+ LS++L + EA F++ + YP ++ + S++E +
Sbjct: 740 HEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAE 799
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+ G+V+TL+GRRR + DI S S + A+R A+N+ IQG++AD+ K AM I + I
Sbjct: 800 KNGYVQTLTGRRRPVTDINSTHKSAKEAAKRIAINSPIQGTSADMIKIAMIKIHEDIEKK 859
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ K R++LQ+HDEL++EVH+ K F + MK ME + L +P+ V+ K G W
Sbjct: 860 HYKSRMLLQVHDELVFEVHKKEKDDFKASMKKHMETAMSLDLPIVVEGKFGVNW 913
>UniRef50_A4E762 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 916
Score = 192 bits (469), Expect = 5e-47
Identities = 137/427 (32%), Positives = 211/427 (49%), Gaps = 40/427 (9%)
Query: 1072 QNAINV----EIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYH-F 1126
+NA NV E+ ++ +L+ E G++VD + + L + +++ + G F
Sbjct: 506 ENAANVFDGIEMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQITEVERSIRDLAGDETF 565
Query: 1127 NFNSSKDVAKVLGIYNG------RKT-----STRKSVLS--SHNTPISSIVMYWRKLNAI 1173
N S ++ VL G +KT ST VLS + + I +++ WR+ + I
Sbjct: 566 NIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVLSDLARDHEIVRLILDWREKSKI 625
Query: 1174 LTKILYPLTEKACIYSEGD-RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFD 1231
+ L L GD R+ ++Y+ T T TGR++ +PNLQN+P
Sbjct: 626 KSTYLDTLGP----LRRGDGRVHTTYNQTITATGRLSSSDPNLQNIP------------- 668
Query: 1232 NTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSI 1291
T S+ + + F A GSV ++ DY Q+E+RLL H S D L R D
Sbjct: 669 -TRSE--LGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHAET 725
Query: 1292 AASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPA 1351
AA VP EV DLR +AK + +GI+YG LSQ L +S EA +D + YP
Sbjct: 726 AARVFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEARDMIDRYYEAYPG 785
Query: 1352 IRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAK 1411
+R F +V+ K+ G+ ET+ GRRR++P++ + R ER A+N +QG+AADI K
Sbjct: 786 VRTFLDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIK 845
Query: 1412 SAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVK 1471
AM + + +ILQ+HDEL +E R ++++ VME V+L+VPL +
Sbjct: 846 IAMARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERLTAMVRDVMEHVVDLRVPLIAE 905
Query: 1472 LKCGYTW 1478
G TW
Sbjct: 906 ASTGITW 912
>UniRef50_Q5UYM9 Cluster: Putative ski2-type helicase; n=2;
Halobacteriaceae|Rep: Putative ski2-type helicase -
Haloarcula marismortui (Halobacterium marismortui)
Length = 799
Score = 192 bits (469), Expect = 5e-47
Identities = 148/520 (28%), Positives = 261/520 (50%), Gaps = 41/520 (7%)
Query: 95 GLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
G+P + + GI E++ Q + + + NLV S PT++GKTL+AE+ + +V
Sbjct: 8 GVPEWLPDHLRDDGIEELYPPQAEAV--EAGVTEGENLVASIPTASGKTLIAELAMLSSV 65
Query: 155 LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNVHVAICTIE 213
R K + I+P ++ EK + G+ + G+ GG + + + + T E
Sbjct: 66 A-RGGKALYIVPLRALASEKQADFEEF-EQYGLDIGVSTGNYESEGGWLADKDIVVATSE 123
Query: 214 KANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIG 273
K +S++ D IEDL VV DE+HL+ D RG LE+ L K++ + +Q +
Sbjct: 124 KVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRRLNPD----LQTVA 177
Query: 274 MSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCN 333
+SAT+ N E LATWL+A L + +RPI L++ +Y + ++ + V N
Sbjct: 178 LSATIGNAEALATWLDAGLVDSDWRPIDLQK-----GVHYGQ-ALHLEDGSQQRLSVQNN 231
Query: 334 DS-VLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSE 392
+ I +T+++ S L+F ++ E+ A L++T R QL
Sbjct: 232 EKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTV------RPHLSTEERDQLAD- 284
Query: 393 HILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATST 452
I E + + ++ D L ++ G +HHAGL+ R+++E AF+ ++V+ AT T
Sbjct: 285 -IAEEIRDVSDTETSDD--LADAVADGAAFHHAGLSRGHRELVEDAFRDRLVKVVCATPT 341
Query: 453 LSSGVNLPARKVIIR------SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEA 506
L++GVN P+R+V++R P+++L QM GRAGR G D GE++LI S
Sbjct: 342 LAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEAVLIASSH 401
Query: 507 EK--KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQK 564
++ ++ + D +PV+S + + IL +AS + S++ LL + + TL ++Q
Sbjct: 402 DEVDELFERYVWADPEPVRSKLAAEPALRTHILATVASGFARSRKGLLEFLEQTLYASQT 461
Query: 565 EILSQ-NLILEDTLKELENYELIRIQNNHSENHYVATALG 603
+ Q +++D L L+ + + I+ + AT+LG
Sbjct: 462 DDSGQLERVVDDVLTYLQRNDFLEIEAGELD----ATSLG 497
>UniRef50_Q2JCJ5 Cluster: DNA polymerase I precursor; n=4;
Actinomycetales|Rep: DNA polymerase I precursor - Frankia
sp. (strain CcI3)
Length = 945
Score = 192 bits (468), Expect = 6e-47
Identities = 127/415 (30%), Positives = 207/415 (49%), Gaps = 30/415 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ ++ +L+ E GI VD E ++ L + +A +I G FN S K +
Sbjct: 544 DIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPFNLGSPKQLQ 603
Query: 1136 KVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGD--- 1192
++L ++ K + + + T ++ + + L +L + A + + D
Sbjct: 604 QIL--FDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVDSLI 661
Query: 1193 -------RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
RI ++++ T TGR++ +PNLQN IP+R T I R
Sbjct: 662 PMIDDIGRIHTTFNQTIAATGRLSSADPNLQN------IPIR------TAEGRQI----R 705
Query: 1245 NVFRAAPG-SVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
F G +++ADY Q+EMR++ H S D L S D+ +AA +P EV
Sbjct: 706 RAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEV 765
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D +LR++ K + YG+ YG+ L+ L ++ EA MD++ + +R F + V+E
Sbjct: 766 DPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVERA 825
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
++ G+ ET+ GRRRYLPD+TS + RR AER A+N IQGSAADI K AM ++ + +
Sbjct: 826 RKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALCA 885
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
RL+LQ+HDEL+ E+ L+++ M + VPL V + G TW
Sbjct: 886 GGYASRLLLQVHDELVLEIAPGEHDAVERLVRAEMTSAYTMSVPLDVSVGAGCTW 940
>UniRef50_A6DML3 Cluster: DNA-directed DNA polymerase, DNA polimerase
I protein; n=1; Lentisphaera araneosa HTCC2155|Rep:
DNA-directed DNA polymerase, DNA polimerase I protein -
Lentisphaera araneosa HTCC2155
Length = 1036
Score = 192 bits (468), Expect = 6e-47
Identities = 129/418 (30%), Positives = 213/418 (50%), Gaps = 31/418 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
++I ++ +LS E +GI ++ + ++ +D +++ + G+ FN NS K V
Sbjct: 638 MDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALAGHEFNINSPKQVGV 697
Query: 1137 VL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
VL G+ G+KT ST VL + + I ++ R L+ +++ L ++
Sbjct: 698 VLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIVRAILRHRTLSKLISTYADALPKEV- 756
Query: 1187 IYSEGD-RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
SE D RI + +S T TGR+ +PNLQN+P T + I R
Sbjct: 757 --SELDQRIHTRFSQTTAATGRLASTQPNLQNIPT------------RTAEGKSI----R 798
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
+ F+A G +S DY Q+E+R++ S+D L +D DV A+ + EV
Sbjct: 799 SAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVT 858
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
R AK + +GI++G G L++ + VS EA F+ ++ + YP ++ F +E+ +
Sbjct: 859 KQQRYAAKAVNFGIMFGQGPYGLAKEIGVSADEAKQFISNYFKRYPDVQKFMAKCVEDAR 918
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+G+ ET GRRRYLP++ S R+ AER +VN+ IQG+AADI K AM + D +
Sbjct: 919 DKGYSETSFGRRRYLPEMLSSNGRIRSGAERISVNSPIQGTAADIIKIAMIKVADELEKR 978
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALD 1482
K +++LQ+HDEL++EV + L+ +M D ++KVPL V +W D
Sbjct: 979 QLKSKMLLQIHDELLFEVPDDELEIMKELIPQIMTDIPQIKVPLKVDCAAAKSWDQCD 1036
>UniRef50_A6CAX6 Cluster: DNA polymerase I; n=1; Planctomyces maris
DSM 8797|Rep: DNA polymerase I - Planctomyces maris DSM
8797
Length = 900
Score = 192 bits (467), Expect = 8e-47
Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 35/447 (7%)
Query: 1046 AQESCVKAWAIEMI--SEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRL 1103
A E AW + I E + L+E Y +E ++ IL+ E GI VD + +
Sbjct: 464 AVEDAEIAWQLSRILQDELKHAGLWELYWE---LERPLISILAEMEFTGIKVDTAELKQQ 520
Query: 1104 LTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL------GIYNGRKT--STRKSVLSS 1155
+ L + +I G+ FN S + VL ++ KT ST +SVL
Sbjct: 521 SQLLEKRLTTLISEIHEIAGHEFNIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEK 580
Query: 1156 HNTPISSI---VMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHE 1211
P+ ++ + R L+ + + L L + E RI +S++ TGR++ +
Sbjct: 581 L-APLHALPARITEHRHLSKLKSTYLDALP--GLVNPETGRIHASFNQVVAATGRLSSSD 637
Query: 1212 PNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHF 1271
PNLQN+P + R + DE N R ++ ADY Q+E+R+L H
Sbjct: 638 PNLQNIP-VRTQEGRQIRKAFIPQDE----NWR----------LLCADYSQIELRILAHL 682
Query: 1272 SEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHL 1331
S+D AL++ + D+ ++A+ VP +VD D+R+ AK + +G+IYG LS+ +
Sbjct: 683 SQDVALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSEAI 742
Query: 1332 DVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRN 1391
+ + EA+ F++ + Y +R F ++E+C +Q FVET+ GR+R + + + + N
Sbjct: 743 GIPQSEAAGFIEDYFVRYQGVREFLDQILEDCAKQKFVETICGRKREIQGVRGGVQKQLN 802
Query: 1392 TAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFI 1451
ER A+NT+IQGSAAD+ K AM ++ D I R+++Q+HDEL++EV T
Sbjct: 803 MPERTAINTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVPLTALDTLG 862
Query: 1452 SLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+++ ME ++L+VPL V + G W
Sbjct: 863 LIVREEMESAMDLEVPLIVDMSSGLNW 889
>UniRef50_O34996 Cluster: DNA polymerase I; n=46; Bacilli|Rep: DNA
polymerase I - Bacillus subtilis
Length = 880
Score = 192 bits (467), Expect = 8e-47
Identities = 135/441 (30%), Positives = 228/441 (51%), Gaps = 32/441 (7%)
Query: 1052 KAWAIEMISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRD 1109
KA AI+ + EK L + Q + +E+ + IL E G+ VD + + R+ ++
Sbjct: 454 KALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGA 513
Query: 1110 SQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLS--SHNTP 1159
++K +I G FN NS K + +L G+ +KT ST VL +
Sbjct: 514 KLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHD 573
Query: 1160 ISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVP 1218
I ++ +R++ + + + L + + ++ + ++ T TGR++ +PNLQN
Sbjct: 574 IVDYILQYRQIGKLQSTYIEGLLKVT--RPDSHKVHTRFNQALTQTGRLSSTDPNLQN-- 629
Query: 1219 RTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMV-SADYCQLEMRLLTHFSEDSAL 1277
IP+R +E + R F + ++ +ADY Q+E+R+L H S+D L
Sbjct: 630 ----IPIRL--------EEGRKI--RQAFVPSEKDWLIFAADYSQIELRVLAHISKDENL 675
Query: 1278 TRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEME 1337
+D+D+ A V + EV +R++AK + +GI+YG+ + LSQ+L ++ E
Sbjct: 676 IEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 735
Query: 1338 ASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQA 1397
A F+D + ++ ++ + + ++E K++G+V TL RRRY+P++TS + R+ AER A
Sbjct: 736 AGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTA 795
Query: 1398 VNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSV 1457
+NT IQGSAADI K AM + + K RL+LQ+HDELI+E + L+ V
Sbjct: 796 MNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEV 855
Query: 1458 MEDTVELKVPLPVKLKCGYTW 1478
ME + L VPL V G +W
Sbjct: 856 MEHALALDVPLKVDFASGPSW 876
>UniRef50_Q74FR5 Cluster: DNA polymerase I; n=9;
Deltaproteobacteria|Rep: DNA polymerase I - Geobacter
sulfurreducens
Length = 891
Score = 191 bits (466), Expect = 1e-46
Identities = 129/417 (30%), Positives = 210/417 (50%), Gaps = 32/417 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ ++ IL+ E G+ +D L+ L + L+++ + FN NS K +
Sbjct: 489 DLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALAPEPFNLNSPKQLG 548
Query: 1136 KVL----GIYNGRKTSTRKSV---------LSSHNTPISSIVMYWRKLNAILTKILYPLT 1182
+VL + G+KT T+ L+ I++ ++ +R L + K Y
Sbjct: 549 EVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAILRYRGLAKL--KSTYTDA 606
Query: 1183 EKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
++ R+ +SY+ T T TGR++ EPNLQN+P +DE +
Sbjct: 607 LPRLVHPASGRVHTSYNQTVTNTGRLSSSEPNLQNIP--------------VRTDEGRKI 652
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
R F A G +++SADY Q+E+R+L H SED D D+ AA +
Sbjct: 653 --RRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHTRTAAEVFGLFPE 710
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
V ++R++AK + +G+IYG G +L++ L ++ A F+D++ +P R F +
Sbjct: 711 MVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPGARAFLDGCVA 770
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
E + +G+V TL GRR +PDI S + R A+R AVN IQGSAADI K+AM + + +
Sbjct: 771 EAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGSAADIIKAAMVRVTERM 830
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
RLI+Q+HDEL++EV E ++ L++ ME L+VPL + G W
Sbjct: 831 RREGLTSRLIMQVHDELVFEVPEGERTAMERLVQHEMEHAAPLRVPLRADVNVGRNW 887
>UniRef50_Q40J99 Cluster: DNA polymerase A; n=2; Ehrlichia
chaffeensis|Rep: DNA polymerase A - Ehrlichia chaffeensis
str. Sapulpa
Length = 944
Score = 191 bits (466), Expect = 1e-46
Identities = 137/430 (31%), Positives = 223/430 (51%), Gaps = 40/430 (9%)
Query: 1065 NALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGY 1124
N LY Y+ VE ++++L + E G+++D +++ L + + VL+ + +++ G
Sbjct: 536 NQLYTIYER---VEKPLIRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGT 592
Query: 1125 HFNFNSSKDVAKVL----GIYNGRKTS-----TRKSVLSS---HNTPISSIVMYWRKLNA 1172
FN SSK + VL GI +K S T VL+ + I+ ++ WR
Sbjct: 593 EFNIASSKQLGTVLFDKMGIKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTK 652
Query: 1173 ILTKILYPLTEKACIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFD 1231
+ + L ++ I S RI + YS T TGR++ PNLQN IP+R
Sbjct: 653 LKSTYTDALGKQ--INSNSGRIHTFYSMISTATGRLSSSNPNLQN------IPIR----- 699
Query: 1232 NTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSI 1291
S+E R F A G +VSADY Q+E+R++ H + A D D+ SI
Sbjct: 700 ---SEEGNAI--RRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIH-SI 753
Query: 1292 AASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPA 1351
A + +D +LR+KAK + +GIIYGM L++ L +S EA+ ++D++ ++YP
Sbjct: 754 TAEQIFCTQS-LDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEANAYIDNYFKSYPE 812
Query: 1352 IRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAK 1411
I+ + ++ K G+ T+ GR+ ++ DI S + RN +ER A+N +QG++ADI K
Sbjct: 813 IQSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFSERAAINAPLQGTSADIIK 872
Query: 1412 SAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVK 1471
+M + D I + LILQ+HDEL++E+ E + ++ VME V+L VPL V
Sbjct: 873 MSMIHLFDKITHGS----LILQVHDELLFEILEEYVDYAVEVITKVMEGIVKLSVPLKVD 928
Query: 1472 LKCGYTWGAL 1481
++ G W L
Sbjct: 929 IRIGTNWADL 938
>UniRef50_A6NVK8 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 889
Score = 191 bits (466), Expect = 1e-46
Identities = 130/421 (30%), Positives = 212/421 (50%), Gaps = 34/421 (8%)
Query: 1071 YQNAINVEIKVLKILSNCELHGIVVDKELVSRL--LTDVRDSQDVLQKKAFKICGYHFNF 1128
+Q ++E+ + ++LS E G++VD++ +S + D R + D Q + +++ G FN
Sbjct: 485 HQLYYDIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAAD--QAEIYELAGETFNI 542
Query: 1129 NSSKDVAKVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKIL 1178
NS++ + K+L G+ +KT ST VL PI ++ +R+ + + +
Sbjct: 543 NSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKLKSTYV 602
Query: 1179 YPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDE 1237
L + + + RI +S+ +T T TGR++ EPNLQN+P +
Sbjct: 603 DGLGK---VIAPDGRIHTSFQNTVTATGRLSSTEPNLQNIPVRTELGAEL---------- 649
Query: 1238 VIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSD 1297
R +F A G V+V ADY Q+E+RLL H + D + ++ D+ AA
Sbjct: 650 ------RKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHTVTAAQVFG 703
Query: 1298 VPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTK 1357
VP +V +R AK + +GI+YG+ +LSQ + V EA +++ + + + +
Sbjct: 704 VPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDIGVPTYEAKEYIEKYFARFSGVHAYMT 763
Query: 1358 SVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSI 1417
V+ K G+V TL GRRR+LP++ S + R+ ER A+N IQG+AADI K AM +
Sbjct: 764 DVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADIMKLAMLHV 823
Query: 1418 EDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYT 1477
+ + RLILQ+HDELI E E +L+ ME +L VPL G +
Sbjct: 824 HSRLREEGLQARLILQVHDELIVECPEEEAETVKALLSREMESVAQLAVPLIADAAAGRS 883
Query: 1478 W 1478
W
Sbjct: 884 W 884
>UniRef50_A3EQ00 Cluster: DNA polymerase I; n=1; Leptospirillum sp.
Group II UBA|Rep: DNA polymerase I - Leptospirillum sp.
Group II UBA
Length = 872
Score = 191 bits (466), Expect = 1e-46
Identities = 132/433 (30%), Positives = 224/433 (51%), Gaps = 34/433 (7%)
Query: 1058 MISEKQQNALYESYQNAI-NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQK 1116
++S+ ++A+ E + ++EI + +IL E+ GI +D++ + + L++
Sbjct: 456 VLSKLWEDAVKEGLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESIEALARELEE 515
Query: 1117 KAFKICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSVLSSHNTPISSI------VMY 1166
+ +++ G F S K V ++L G+ RK T S T +S + ++
Sbjct: 516 EIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTGLSGLHPLPEKILA 575
Query: 1167 WRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPL 1225
+R++ +L+ + P++ + ++G R+ ++ T T TGR++ PNLQN IP+
Sbjct: 576 YRQMKKLLSTYVDPISRG--VDAQG-RLHGQFNQTVTATGRLSSSNPNLQN------IPM 626
Query: 1226 RYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDV 1285
R + E+ R F A V++SADY Q+E+RLL HFSED L + + +
Sbjct: 627 R-----SPAGREI-----RKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNE 676
Query: 1286 DVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSF 1345
D+ A P V + R+KAK + +GI+YGM +LS L V EA F+D +
Sbjct: 677 DIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSLSLDLGVEPPEAQAFIDRY 733
Query: 1346 ERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGS 1405
+P + S++EE K+ G V T+ GR+R +P++++ R ER AVNT++QGS
Sbjct: 734 FGAFPKVGPLFDSILEEAKKTGEVRTILGRKRRIPELSAPDRRSREYGERMAVNTVLQGS 793
Query: 1406 AADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELK 1465
AAD+ K +M L++Q+HDEL++EV E N ++S+ME + LK
Sbjct: 794 AADLIKKSMVDFGQVRKDRPEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGALRLK 853
Query: 1466 VPLPVKLKCGYTW 1478
VPL V++ G W
Sbjct: 854 VPLIVQVGHGKNW 866
>UniRef50_A5WH47 Cluster: DNA polymerase I; n=1; Psychrobacter sp.
PRwf-1|Rep: DNA polymerase I - Psychrobacter sp. PRwf-1
Length = 1022
Score = 191 bits (465), Expect = 1e-46
Identities = 133/423 (31%), Positives = 215/423 (50%), Gaps = 41/423 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+EI V +IL E GI++ + ++ L + L+K+A+ G FN S K + +
Sbjct: 616 LEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIVALEKQAYIEAGEAFNLGSPKQLGE 675
Query: 1137 VL----GIYNGRKT-----STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACI 1187
+L G+ G+KT ST ++VLS P++ I + +R L + K Y A
Sbjct: 676 MLFDKLGVIGGKKTKSGQYSTGEAVLSKIEHPLAEIALEYRSLAKL--KNTYTDALDAVA 733
Query: 1188 YSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNV 1246
++ DR+ +SY T TGR++ +PNLQN IP+R T + +I R
Sbjct: 734 DNDTDRVHTSYHQALTSTGRLSSTDPNLQN------IPIR------TKTGRLI----RQA 777
Query: 1247 FRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDD 1306
F A G V+++ADY Q+E+RL+ HFS D LTR +D+ + AA +V
Sbjct: 778 FIAPKGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPT 837
Query: 1307 LRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQ 1366
R+ AK + +G++YGM L++ + + EA +++ + YP ++ + +
Sbjct: 838 ERRNAKAINFGLLYGMSAFGLAKQIQMGRSEAQDYINQYFARYPGVQRYMQETRNSAVDN 897
Query: 1367 GFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNP 1426
G++ET+ GR+ Y PDI R AER A+N +QGSAAD+ K AM ++++ + N
Sbjct: 898 GYIETILGRKLYTPDIQHSNQMVRRGAERAAINAPLQGSAADLIKLAMIAVDNVLPKQNA 957
Query: 1427 KPRLILQMHDELIYEVHETNKSRFISLMKSVME----DT-------VELKVPLPVKLKCG 1475
K ++LQ+HDEL++EV L+K+ M+ DT V+ VPL V+ G
Sbjct: 958 K--MLLQVHDELVFEVDADKVDHIAKLIKNAMQNVLSDTAKQMGWDVDFAVPLLVETGVG 1015
Query: 1476 YTW 1478
W
Sbjct: 1016 DNW 1018
>UniRef50_A4AJR3 Cluster: DNA polymerase I; n=1; marine
actinobacterium PHSC20C1|Rep: DNA polymerase I - marine
actinobacterium PHSC20C1
Length = 879
Score = 190 bits (464), Expect = 2e-46
Identities = 126/446 (28%), Positives = 217/446 (48%), Gaps = 27/446 (6%)
Query: 1044 TLAQESCVKAWAIEMISEKQQNALYESYQNAI-NVEIKVLKILSNCELHGIVVDKELVSR 1102
T A +W + ++E L E + ++E+ ++ + + E GI V+++L+
Sbjct: 445 TEALSPATLSWYVVRVAEYLAGRLDEGSLGVLTDIEMPLVPVFARMERTGIAVNQQLLLD 504
Query: 1103 LLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIY-NGRKTSTRKSVLSSHNTPIS 1161
L + ++ + + AF++ G N S K + +VL KT K+ S+ ++
Sbjct: 505 LSASLTETAQEVARNAFEVIGREINLGSPKQLQEVLFTQLEMPKTRANKTGYSTDAASLA 564
Query: 1162 SIVMYWRK--LNAIL-----TKILYPLTEKACIYSEGDRIMSSYSTF-TCTGRITMHEPN 1213
+ LN +L TK++ +T + R+ ++Y + TGRI ++PN
Sbjct: 565 DLQEQAPHPFLNLLLQHRDATKLVQIITGIEKAIDDSGRVHTTYEQAGSSTGRIASNDPN 624
Query: 1214 LQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPG-SVMVSADYCQLEMRLLTHFS 1272
LQNVP T ++ R+ F A G +++ADY Q+EMR++ H S
Sbjct: 625 LQNVP-----------IKTATGRQI-----RSAFEAGAGFDTLLTADYSQIEMRIMAHLS 668
Query: 1273 EDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLD 1332
D L + D+ + + + V EV ++R K K + YG+ YG+ LS+ L
Sbjct: 669 GDEGLIQAFNEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAFGLSKQLR 728
Query: 1333 VSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNT 1392
+ EA M + + A+R + ++V+E+ + G+ T+ GRRR D+ S R+
Sbjct: 729 IETSEAKALMTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDN 788
Query: 1393 AERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFIS 1452
AERQA+N+ IQGSAADI K AM I+ + K R++LQ+HDEL++E+ R +
Sbjct: 789 AERQALNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTT 848
Query: 1453 LMKSVMEDTVELKVPLPVKLKCGYTW 1478
++ M L VPL V++ G+ W
Sbjct: 849 IVHERMSGAASLSVPLDVQIGTGHNW 874
>UniRef50_O51498 Cluster: DNA polymerase I; n=3; Borrelia burgdorferi
group|Rep: DNA polymerase I - Borrelia burgdorferi (Lyme
disease spirochete)
Length = 908
Score = 190 bits (463), Expect = 2e-46
Identities = 124/413 (30%), Positives = 209/413 (50%), Gaps = 24/413 (5%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ K++ E +GI +DKE + ++ + ++ + K G FN NS K + +
Sbjct: 511 IEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIKSIGIDFNLNSPKQMHE 570
Query: 1137 VLGIYNG-------RKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYS 1189
+L +K ST VL S SI + K Y I
Sbjct: 571 ILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLKSTYTDNLIELINY 630
Query: 1190 EGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFR 1248
+ +R+ +S+ T T TGRIT PNLQN+P DE R F+
Sbjct: 631 KTNRLHTSFIQTKTATGRITSINPNLQNIP---------------IKDEKGR-KIRKAFK 674
Query: 1249 AAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLR 1308
G++ +SADY Q+E+ +L H S+D L + +++ D+ A+ + E E+ +LR
Sbjct: 675 PENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLR 734
Query: 1309 QKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGF 1368
+ AK + +GIIY M + L++ L +++ EA F++S+ +YP I+ F + I + G+
Sbjct: 735 RIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGY 794
Query: 1369 VETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKP 1428
ET+ RRRY+ +I S+ R+ AER A+N++IQGSAADI K AM + + S +
Sbjct: 795 SETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVKVFNEFKSKKMES 854
Query: 1429 RLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGAL 1481
+++LQ+HDE++ E ++ ++K +ME L +PL ++ G +WG +
Sbjct: 855 KILLQVHDEMLIESPIEEENEVKKILKIMMETAYTLNLPLRANIETGKSWGEI 907
>UniRef50_Q2S226 Cluster: DNA polymerase I; n=3; Sphingobacteriales
genera incertae sedis|Rep: DNA polymerase I -
Salinibacter ruber (strain DSM 13855)
Length = 926
Score = 190 bits (462), Expect = 3e-46
Identities = 128/418 (30%), Positives = 216/418 (51%), Gaps = 31/418 (7%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
A ++E ++ +L+ E GI +D +++ +L + + ++++ F++ G FN NS++
Sbjct: 523 AHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQ 582
Query: 1134 VAKVL---------GIYNGRKTSTRKSVLSSHNTP--ISSIVMYWRKLNAILTKILYPLT 1182
+ ++L K ST++SVL +T I +V+ WR + + L L
Sbjct: 583 LGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLG 642
Query: 1183 EKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
E ++ E R+ +S++ T T TGR++ +PNLQN IP+R T I
Sbjct: 643 E--LVHPETGRLHTSFNQTRTATGRLSSSDPNLQN------IPIR------TEMGRQI-- 686
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
R F G ++SADY Q+E+R+L S D A+ + D+ AA +
Sbjct: 687 --RRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPE 744
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
+V + R KAK++ YGI YG+ L+Q + + EA + + ++YP + ++E
Sbjct: 745 DVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQYRKSYPGVSQLLNELVE 804
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
+ + +G+ ETL GRRRYLPDI S ++ R+ AER AVN IQG+ AD+ K AM I D +
Sbjct: 805 KAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGTQADMIKIAMNRIHDRL 864
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVEL-KVPLPVKLKCGYTW 1478
+ +++LQ+HDEL++EV +++ M D + L VP+ V + G W
Sbjct: 865 AGDDWATQMLLQVHDELVFEVPPDELDAAQTMIDDEMRDALPLDDVPVTVDMDTGDNW 922
>UniRef50_Q14QK7 Cluster: Probable dna polymeraseIprotein; n=1;
Spiroplasma citri|Rep: Probable dna polymeraseIprotein -
Spiroplasma citri
Length = 869
Score = 189 bits (461), Expect = 4e-46
Identities = 129/432 (29%), Positives = 235/432 (54%), Gaps = 35/432 (8%)
Query: 1056 IEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDK-ELVSRLLTDVRDSQDVL 1114
IE++ QQ LY N+E+ + L+ E++G+ VD+ EL ++ L + Q+ L
Sbjct: 460 IELLKTNQQYDLYH------NIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQE-L 512
Query: 1115 QKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSVLSS--HNTPISSIVMYWR 1168
+ I N NS K ++++L + + +K ST + L +N I ++ +R
Sbjct: 513 NNEINDIAQKEINPNSPKQISELLFQNFSLPDRKKGSTAQETLEEIKNNHVIIPKILDYR 572
Query: 1169 KLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRY 1227
K + + L + EK I+++G ++ + Y T T TGR++ EPN+QN I +R
Sbjct: 573 KYQKLYSTYLKGM-EKY-IFADG-KVHTIYKQTLTNTGRLSSVEPNMQN------ISIR- 622
Query: 1228 LTFDNTTSDEVIEFNCRNVFR-AAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVD 1286
+ I+ R +F ++P ++++S DY Q+E+R+L H S+D L ++ D
Sbjct: 623 ---------DHIQKEVRKIFVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNED 673
Query: 1287 VFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFE 1346
+ + A ++ + E+ ++R+ AK + +GIIYG+ + L+ L++S +A ++++
Sbjct: 674 IHTNTAMKIFNLSKDEITPNIRRSAKAVNFGIIYGISDFGLATDLNISVAKAKAIINNYY 733
Query: 1347 RTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSA 1406
+ +P I+ F +E CK+ G+V T+ R+RY+ +I +R +R A+N IQGSA
Sbjct: 734 QQFPTIKAFIDKQVEFCKQNGYVTTIFNRKRYVSEINDRNYMQREFGKRIAMNMPIQGSA 793
Query: 1407 ADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKV 1466
ADI K A+ +I+ N K ++I Q+HDELI+E+ + + ++K +MED+ +L V
Sbjct: 794 ADIIKIALKNIDQEFLKLNLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTKLDV 853
Query: 1467 PLPVKLKCGYTW 1478
L V +K G +W
Sbjct: 854 KLIVDMKTGLSW 865
>UniRef50_O75417 Cluster: DNA polymerase theta; n=25; Eumetazoa|Rep:
DNA polymerase theta - Homo sapiens (Human)
Length = 1762
Score = 189 bits (461), Expect = 4e-46
Identities = 86/182 (47%), Positives = 123/182 (67%)
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R+ F PG +++ADY QLE+R+L H S D L +++ + DVF+SIAA W + V
Sbjct: 1487 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 1546
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
DDLRQ+AKQ+CYGIIYGMG K+L + + + E +A+ ++DSF+ Y I F ++ C
Sbjct: 1547 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 1606
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
KR GFV+T+ GRRRYLP I + R+ AERQA+NT++QGSAADI K A +I+ + +
Sbjct: 1607 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 1666
Query: 1424 FN 1425
F+
Sbjct: 1667 FH 1668
Score = 70.1 bits (164), Expect = 4e-10
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 1143 GRKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACI--YSEGDRIMSSY 1198
GR+ ST K VL+ P+ +++ WR++ +TK+++PL + C+ + +RI
Sbjct: 1346 GRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVS 1405
Query: 1199 STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEV 1238
+ T TGRIT EPN+QNVPR F I + L ++ S V
Sbjct: 1406 QSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAV 1445
Score = 54.4 bits (125), Expect = 2e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 1431 ILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDE 1483
ILQ+HDEL+YEV E + + ++K+ ME V+L V L VK+K G +WG L +
Sbjct: 1707 ILQLHDELLYEVVEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGASWGELKD 1759
>UniRef50_Q1II21 Cluster: DNA polymerase I; n=1; Acidobacteria
bacterium Ellin345|Rep: DNA polymerase I - Acidobacteria
bacterium (strain Ellin345)
Length = 929
Score = 188 bits (457), Expect = 1e-45
Identities = 131/422 (31%), Positives = 211/422 (50%), Gaps = 34/422 (8%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
+++ ++ +L E G+ +D ++++ + T ++ D L +K + + G FN NS K +
Sbjct: 527 DIDRPLVTVLYAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEFNINSPKQLG 586
Query: 1136 KVL----------GIYNGRKTSTRKSVLSS----HNTPISSIVMYWRKLNAILTKILYPL 1181
VL G+ ST VL H P +V+ +R+ + + + L
Sbjct: 587 DVLFNKLNLPKPVKYGKGKTISTAVDVLEGLAGEHEVP--KLVLEYRQFTKLKSTYVDAL 644
Query: 1182 TEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
C G + T TGR++ PNLQN IP+R E+
Sbjct: 645 PN-LCHAGTGRLHTTFAQAATSTGRLSSVNPNLQN------IPIR-----TELGREI--- 689
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
R F A G+V+++ADY Q+E+RLL HFS+D L +D D+ A+ VP
Sbjct: 690 --RAAFVAEKGNVLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPM 747
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
+D + R++AK + +GI+YG+ LSQ L + E+ +++S+ Y +R + SV+E
Sbjct: 748 MIDAEHRRRAKAVNFGIVYGISPFGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLE 807
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
+ ++ V TL GR R +PDI S + R AER A NT +QG+AAD+ K AM I +
Sbjct: 808 QVRKDEKVSTLFGRIRPIPDIHSRNPNLRGFAERTATNTPLQGTAADLIKLAMIRIHRDL 867
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDT-VELKVPLPVKLKCGYTWGA 1480
K R++LQ+HDEL++EV + +L++ ME+ EL VPL V + G W
Sbjct: 868 IERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPELTVPLKVDVGVGKNWRD 927
Query: 1481 LD 1482
+D
Sbjct: 928 MD 929
>UniRef50_A0RYB7 Cluster: Superfamily II helicase; n=1; Cenarchaeum
symbiosum|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 707
Score = 188 bits (457), Expect = 1e-45
Identities = 131/429 (30%), Positives = 227/429 (52%), Gaps = 34/429 (7%)
Query: 126 LFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFY---LQNIL 182
L D +++ SAPT++GKTL+A I I + + K + + P ++ EK + I
Sbjct: 36 LTDGKSVLVSAPTASGKTLIAAIAMISHLSRNRGKAVYLSPLRALAAEKFAEFGKIGGIP 95
Query: 183 SSSGIRVEGFMGSQSPAG-GMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHL 241
+RV G AG + N + + T E+ +S+I R D ++++G V+ DE+HL
Sbjct: 96 LGRPVRVGVSTGDFEKAGRSLGNNDILVLTNERMDSLIRRRPDW--MDEVGLVIADEIHL 153
Query: 242 LGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIP 301
+GD++RG LE++LTK++ + S QV+ +SAT+ N + +A WL+ L +T+RP+P
Sbjct: 154 IGDRSRGPTLEMVLTKLRGLRSSP----QVVALSATISNADEIAGWLDCTLVHSTWRPVP 209
Query: 302 LEEYCLVENKYYDKNGKYIL-EAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
L E Y D G+ + + + + + E++ EG LIF T+ R
Sbjct: 210 LSE-----GVYQD--GEVAMGDGSRHEVAATGGGPAVDLAAESVAEGGQSLIFADTRARS 262
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGV 420
SLA S+ + +G++ + + ++ I+ + + K L + L + + G
Sbjct: 263 ASLAAKASAVIPE--AKGADAAKLAAA---AKKIISSGGETK-----LAKTLAELVEKGA 312
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPV------FQKQ 474
+HHAGL D R ++E F+SG IR+L +T TL++GVNLPAR+V+I S + +
Sbjct: 313 AFHHAGLNQDCRSVVEEEFRSGRIRLLASTPTLAAGVNLPARRVVISSVMRYNSSSGMSE 372
Query: 475 PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR 534
PI+IL YKQ+ GRAGR D GE+I++ +I + G+ +P++S +
Sbjct: 373 PISILEYKQLCGRAGRPQYDKSGEAIVVGGVNADEIFDRYIGGEPEPIRSAMVDDRALRI 432
Query: 535 AILEIIASN 543
+L ++ ++
Sbjct: 433 HVLSLVTTS 441
>UniRef50_Q9YFQ8 Cluster: Putative ski2-type helicase; n=1;
Aeropyrum pernix|Rep: Putative ski2-type helicase -
Aeropyrum pernix
Length = 735
Score = 187 bits (456), Expect = 2e-45
Identities = 144/521 (27%), Positives = 264/521 (50%), Gaps = 46/521 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
NLV +APT +GKT +A + + ++ + ++P S+ EK + +ILS G++++
Sbjct: 45 NLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEK-YTSFSILSRMGLKLK 103
Query: 191 GFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYI 250
+G G V I T EK +S++ + ++ ++VDE+H + D RG I
Sbjct: 104 ISVGDFRE--GPPEAPVVIATYEKFDSLLR--VSPSLARNVSVLIVDEIHSVSDPKRGPI 159
Query: 251 LELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVEN 310
LE +++++ ++ Q++G+SAT+PN +A W+ ++ +++RP+PL EY E
Sbjct: 160 LESIVSRMLASAGEA----QLVGLSATVPNAGEIAEWIGGKIVESSWRPVPLREYVFKEY 215
Query: 311 KYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSST 370
K Y G L YG+ D + E I++G L+F ++ R +LA+ +
Sbjct: 216 KLYSPTGG--LREVPRVYGLYDLD----LAAEAIEDGGQALVFTYSRRRAVTLAKRAAK- 268
Query: 371 FCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLD 430
G L S+ + EA + + +P + + L I+ G+ YHHAGL
Sbjct: 269 ---------RLGRRLSSREARVYSAEA-SRAEGAPRSVAEELASLIAAGIAYHHAGLPPS 318
Query: 431 ERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVII----RSPVFQKQPINILSYKQMSG 486
R +E AF++GA++V+ +T TL++GVNLPAR+V+I R ++PI + YKQM+G
Sbjct: 319 LRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRVAEYKQMAG 378
Query: 487 RAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRA----ILEIIAS 542
RAGR G D GE+I++ ++ +L+ G + +E++ +R IL I+A
Sbjct: 379 RAGRPGLDEFGEAIIVAERLDRP--EDLISGYIRAPPERVESRLAGLRGLRHFILGIVAP 436
Query: 543 NISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATAL 602
S + + TL S Q+ + + + +++L + L+ ++ AT+L
Sbjct: 437 EGEVSIGSIEKVSGLTLYSLQRGLPRET--IARAVEDLSAWGLVEVKG----WRIAATSL 490
Query: 603 GKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYLVT 643
G+ + + P + + +F E K L + + ++YL++
Sbjct: 491 GREVAAVYLDP-ESVPVFREEVKH---LSFDNEFDILYLIS 527
>UniRef50_Q2EMU8 Cluster: Helicase; n=1; Methanococcus voltae|Rep:
Helicase - Methanococcus voltae
Length = 871
Score = 187 bits (455), Expect = 2e-45
Identities = 153/469 (32%), Positives = 235/469 (50%), Gaps = 55/469 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-----------------KVIIILPFVSIVRE 173
N + S PT++GKTL+ E+ I VL+ K K + I+P ++ E
Sbjct: 41 NFIISIPTASGKTLIGEMAFINHVLQPSKSQNNNETGDLEFLPSGKKALFIVPLKALATE 100
Query: 174 KMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGA 233
K + + G+++ +G + + I T EK +S++ R + + D+
Sbjct: 101 KFDEFREKYNKFGLKIGISIGDYDSKENLSRYDIIIMTSEKLDSLM-RKKNTTWLNDVSV 159
Query: 234 VVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELF 293
V++DE+HLLGD+ RG LE++LTK+K L IQ+IG+SAT+ N E LATWLNA+L
Sbjct: 160 VIIDEIHLLGDKERGGTLEIVLTKLKM------LPIQIIGLSATIGNSEELATWLNAKLV 213
Query: 294 ITTFRPIPLEE--YCLVENK---YYDKNGKYIL-------EAKS-SNYGVSCNDSVLKIC 340
+ T+RP+ L++ Y ENK Y ++ K ++ E K+ NYG S + +
Sbjct: 214 VDTWRPVELKKGLYHPDENKVDFYKIEDYKVVICENGKNKECKNLKNYG-SSKSEISNLI 272
Query: 341 LETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQ 400
L+ IK S L+FC +K S A+ T E E I S IL LE+
Sbjct: 273 LDCIKSSGSCLVFCSSKRNAVSEAKKNDLTKYLKETEKEELAEI------SSEILNILEK 326
Query: 401 LKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLP 460
+ L + ++K GV +HHAGL + +R ++E AF+ I+V+ T TLS+G+NLP
Sbjct: 327 PSKTCEQLSECVKK----GVAFHHAGLAMKQRKLVEDAFRKRLIKVICCTPTLSAGLNLP 382
Query: 461 ARKVIIR-SPVFQKQPI-NI--LSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMM 516
R+ IIR + F NI + +Q GRAGR G D GE I++ ++ ++G NL M
Sbjct: 383 CRRAIIRDTKRFDGTGFSNIPNMEIQQCIGRAGRPGLDPYGEGIIVVKKS-SEVGDNLYM 441
Query: 517 --GDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQ 563
G + + S I K+ IL I S S +L + T + Q
Sbjct: 442 LRGKPEEIYSNISNKKTLRIFILGSIFSGEIVSFYQLKQFMKNTFYAVQ 490
>UniRef50_A4FXS4 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Methanococcus|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 747
Score = 187 bits (455), Expect = 2e-45
Identities = 137/450 (30%), Positives = 228/450 (50%), Gaps = 37/450 (8%)
Query: 126 LFD-CANLVYSAPTSAGKTLVAEILTIKTVLERQK-----KVIIILPFVSIVREKMFYLQ 179
LFD N + PT++GKTL+ E+ + +L+ K K + I+P ++ EK +
Sbjct: 27 LFDKTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFR 86
Query: 180 NILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
GI+V +G + H+ I T EK +S++ ++ I D+ V+DE+
Sbjct: 87 EKYEKYGIKVGLSIGDFDTKENLSKFHIIITTSEKLDSLMRHNVEW--INDVSLAVIDEI 144
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRP 299
HL+GD RG LE++LTK+K +L Q++G+SAT+ N E L+ WLNA+L + +RP
Sbjct: 145 HLIGDNERGGTLEVILTKLK------NLNAQIVGLSATIGNPEELSNWLNAKLIVDGWRP 198
Query: 300 IPLEEYCLVENKY-YDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKN 358
+ L++ EN+ + KN ++ S N ++ + +++++E S LIFC +K
Sbjct: 199 VELKKGIYFENELEFLKNPAKKIKQVSRN-------NLTDLIVDSVEEKGSCLIFCNSKR 251
Query: 359 RCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISF 418
A+ + E E + SE IL L++ PV + L K I
Sbjct: 252 NAVGEAKKHNLAKYLTRTEQHELNKL------SEEILSILDR----PVETCKALSKCIQN 301
Query: 419 GVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQ---- 474
GV +HHAGLT R I+E F++ I+V+ T TLS+G+NLP R+ I+R Q
Sbjct: 302 GVAFHHAGLTYKHRKIVEDGFRNRLIKVICCTPTLSAGLNLPCRRAIVRDIKRYSQNGLV 361
Query: 475 PINILSYKQMSGRAGRMGRDTKGESIL-ICSEAEKKIGFNLMMGDLDPVKSCIETKEKYM 533
I + +Q GRAGR G D GE I+ I +E + + + ++ G ++ + S + ++
Sbjct: 362 DIPRMEIQQCIGRAGRPGLDPYGEGIIYIKNERDAEKAYEILTGSVENIYSKLANQKVLR 421
Query: 534 RAILEIIASNISCSKQELLLYTDCTLLSAQ 563
IL +I++ Q L+ + T + Q
Sbjct: 422 IHILGLISTGEIKDGQNLVNFMKNTFYAHQ 451
>UniRef50_Q9A2U2 Cluster: DNA polymerase I; n=15;
Alphaproteobacteria|Rep: DNA polymerase I - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 967
Score = 186 bits (454), Expect = 3e-45
Identities = 127/413 (30%), Positives = 209/413 (50%), Gaps = 38/413 (9%)
Query: 1084 ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----G 1139
+L+ E +G+ VD E + L + + +A ++ G FN S K + VL
Sbjct: 571 VLAMMENNGVRVDPEALRLLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQ 630
Query: 1140 IYNGRKT-----STRKSVLSS----HNTPISSIVMYWRKLNAILTKILYPLTEKACIYSE 1190
+ G+KT ST VL S H P +++ WR+L+ + K Y A I
Sbjct: 631 MKGGKKTATGQWSTDSDVLESLALEHELP--RVLLDWRQLSKL--KGTYTENLIAAIAPS 686
Query: 1191 GDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRA 1249
R+ +SY+ T TGR++ +PNLQN IP+R T I R F A
Sbjct: 687 TGRVHTSYALAATTTGRLSSSDPNLQN------IPVR------TEEGRKI----RKAFVA 730
Query: 1250 APGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQ 1309
APG V++SADY Q+E+RLL H + L + + +D+ A+ D P +D +R+
Sbjct: 731 APGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRR 790
Query: 1310 KAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFV 1369
+AK + +GI+YG+ L+ L +S+ EA ++ ++ +P I+ + + + G+V
Sbjct: 791 RAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYV 850
Query: 1370 ETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPR 1429
T+ GR+ +PDI + + R AER A+N IQG+AAD+ + AM + + + R
Sbjct: 851 TTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIRMPVALEAAGLSTR 910
Query: 1430 LILQMHDELIYEVHETNKSRFISLMKSVMEDTVE----LKVPLPVKLKCGYTW 1478
++LQ+HDEL++E E R +++++VME E L +PL V+ + W
Sbjct: 911 MLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 963
>UniRef50_A5TW64 Cluster: DNA-directed DNA polymerase I; n=4;
Fusobacterium nucleatum|Rep: DNA-directed DNA polymerase
I - Fusobacterium nucleatum subsp. polymorphum ATCC 10953
Length = 914
Score = 186 bits (453), Expect = 4e-45
Identities = 127/422 (30%), Positives = 219/422 (51%), Gaps = 34/422 (8%)
Query: 1071 YQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNS 1130
Y+ + E+ ++ +LS E GI +D + ++ ++K ++ G FN NS
Sbjct: 509 YKVLMENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGEEFNINS 568
Query: 1131 SKDVAKVL----GIYNGRKTSTRKSV-------LSSHNTPISSIVMYWRKLNAILTKILY 1179
K + +L + +G+KT T S L S+ I+ +++ +RKLN + T +
Sbjct: 569 PKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVD 628
Query: 1180 PLTEKACIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEV 1238
L + E RI +S++ T TGR++ +PNLQN+P +D+
Sbjct: 629 TLP---LLVDENSRIHTSFNQIGTATGRLSSSDPNLQNIP--------------VKTDDG 671
Query: 1239 IEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDV 1298
I+ R F A G V++S DY Q+E+R+LT S+D L + + D+ A ++
Sbjct: 672 IKI--REGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNL 729
Query: 1299 PEGE-VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTK 1357
+ E V + R AK + + IIYG L++ L + +AS ++ + YP + F K
Sbjct: 730 ADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEK 789
Query: 1358 SVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSI 1417
VIE + G+V+TL GR+RY+ I S + ++ AER AVNT+IQG+AA++ K M +
Sbjct: 790 EVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKV 849
Query: 1418 EDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELK-VPLPVKLKCGY 1476
D + L+LQ+HDELI+EV +++ ++ ++ +M++TV+L+ V L + + G
Sbjct: 850 YDVLKD-KEDIALLLQVHDELIFEVEKSSVEKYSEILADIMKNTVQLEDVKLNININIGK 908
Query: 1477 TW 1478
W
Sbjct: 909 NW 910
>UniRef50_A6KZN3 Cluster: DNA polymerase I; n=1; Bacteroides vulgatus
ATCC 8482|Rep: DNA polymerase I - Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 971
Score = 186 bits (452), Expect = 5e-45
Identities = 130/415 (31%), Positives = 203/415 (48%), Gaps = 31/415 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L+ E +G+ VD E + + + ++++ ++ G FN S K V +
Sbjct: 571 IEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGE 630
Query: 1137 VLG-----IYNGRKTSTRKSVLSSH-------NTPISSIVMYWRKLNAILTKILYPLTEK 1184
VL + +KT T + V S I ++ R L +L + L
Sbjct: 631 VLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALP-- 688
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
I E +I +S++ T T TGR++ PNLQN IP+R N E+
Sbjct: 689 LLINKETGKIHTSFNQTVTATGRLSSSNPNLQN------IPIR-----NEDGKEI----- 732
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F G SADY Q+E+R++ H S D+ + K D+ + AA + +V
Sbjct: 733 RKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKV 792
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R KAK +GIIYG+ L++ ++V EA +D + TYP I+ + I+
Sbjct: 793 TREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLA 852
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ QG++ET+ GR+RYLPDI S + R AER A+N IQGSAADI K AM I S
Sbjct: 853 RGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQS 912
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ K ++ILQ+HDEL + V K + ++ ME+ ++VPL G W
Sbjct: 913 ESIKSKMILQVHDELNFSVLPEEKEKVQKIVIEEMENAYRMQVPLRADCGWGSNW 967
>UniRef50_A6FZM5 Cluster: DNA polymerase I; n=1; Plesiocystis pacifica
SIR-1|Rep: DNA polymerase I - Plesiocystis pacifica SIR-1
Length = 898
Score = 186 bits (452), Expect = 5e-45
Identities = 140/462 (30%), Positives = 221/462 (47%), Gaps = 36/462 (7%)
Query: 1036 RQTKLKNLTLAQESCVKAWAIEM-ISEKQQNALYESYQNAIN-VEIKVLKILSNCELHGI 1093
R ++L LA C + A+ E ++ E +++ + V + + +L EL G+
Sbjct: 450 RFSQLDAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLSWVLGQMELDGV 509
Query: 1094 VVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL------GIYNGRKT- 1146
+D E + ++ + + L+K F+I G FN SSK + VL + KT
Sbjct: 510 AIDSEDLGKMSEEFGERLAKLEKTIFEIAGREFNIASSKQLGAVLFDELELPVIKRTKTG 569
Query: 1147 -STRKSVLS----SHNTPISSIVMYWRKLNAILTKILYPLTE--KACIYSEGDRIMSSYS 1199
ST VL P +I Y + + L K++ T+ +A + + RI +++
Sbjct: 570 YSTNAEVLERLAGKTKHPKHTIAKYLLE-HRKLAKLINTYTDVLQAAVNPDSGRIHATFQ 628
Query: 1200 -TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSA 1258
T +GR+ EP+LQ P T + + R F PG ++SA
Sbjct: 629 QTAGVSGRLITTEPDLQRTPI------------KTPEGKRV----RQAFVTRPGYKLISA 672
Query: 1259 DYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG--EVDDDLRQKAKQLCY 1316
D+ Q+E+RLL HFS D+ L +DV AA +V G +V + R K + +
Sbjct: 673 DWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNF 732
Query: 1317 GIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRR 1376
IYG G L Q L V +A ++D + Y +R + + + GFVETL GRR
Sbjct: 733 ATIYGQGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQANVDGFVETLLGRR 792
Query: 1377 RYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHD 1436
RY+P+++S+ R ER A NT IQGSAADI K AM I+ + + R++LQ+HD
Sbjct: 793 RYIPELSSNNWQDRQAGERIAANTPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHD 852
Query: 1437 ELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
EL++E +++++ ME VEL+VPL V + G TW
Sbjct: 853 ELVFEAPVAEVEAVVAIVRGQMESVVELRVPLVVDVGVGDTW 894
>UniRef50_Q8KBW5 Cluster: DNA polymerase I; n=10; Chlorobiaceae|Rep:
DNA polymerase I - Chlorobium tepidum
Length = 950
Score = 185 bits (450), Expect = 9e-45
Identities = 129/435 (29%), Positives = 226/435 (51%), Gaps = 38/435 (8%)
Query: 1061 EKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFK 1120
E+Q E + +E ++++L++ E GI +D + +L V L ++ F+
Sbjct: 533 EEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTERIFE 592
Query: 1121 ICGYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNT------------PISSIVMYWR 1168
G FN +S K + +L ++ K +K+ + ++T P++S ++ +R
Sbjct: 593 ATGETFNIDSPKQLGHIL--FDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLEYR 650
Query: 1169 KLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRY 1227
L + + + L + I R+ +S++ + T TGR++ PNLQN IP+R
Sbjct: 651 SLQKLKSTYIEALPKM--INPLTGRVHTSFNQSITATGRLSSSNPNLQN------IPIR- 701
Query: 1228 LTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDV 1287
T + I R + PG++++SADY Q+E+R+ S D L ++ D+
Sbjct: 702 -----TELGKEIR---RAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAFRNHEDI 753
Query: 1288 FKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFER 1347
+ A D E + D+R+KAK++ +G++YG+ LSQ L + + EA +D++
Sbjct: 754 HAATARVIFDTKE--ITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKEIIDTYMA 811
Query: 1348 TYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAA 1407
YP + +++IEE K++G+V TL GRRRY+PD+ S ++ R AER +NT IQG+AA
Sbjct: 812 KYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMNTPIQGTAA 871
Query: 1408 DIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE---L 1464
DI K AMCSI + + ++LQ+HDEL++E+ ++R +++ M + L
Sbjct: 872 DIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEMPPDEEARLREMVERNMIEAASKCGL 931
Query: 1465 K-VPLPVKLKCGYTW 1478
K VP+ V G W
Sbjct: 932 KNVPVEVDTGSGKNW 946
>UniRef50_Q6KZ87 Cluster: Helicase involved in UV-protection; n=2;
Thermoplasmatales|Rep: Helicase involved in
UV-protection - Picrophilus torridus
Length = 674
Score = 185 bits (450), Expect = 9e-45
Identities = 155/495 (31%), Positives = 248/495 (50%), Gaps = 57/495 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
N++ S PT++GK+L+ K L +K + I+ P S+ EK L N L S +R+
Sbjct: 37 NVIVSVPTASGKSLIGYYAIYKAFLAGKKSMYIV-PLRSLAMEKYEELLN-LRSLNMRIT 94
Query: 191 GFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGY 249
+G SP ++N V + T E+A+SMI+ D I D GA++ DE+H++ D++RG
Sbjct: 95 ISIGDYDSPPSFIKNNDVIVVTSERADSMIHH--DPDIINDFGAIIADEIHIINDEDRGP 152
Query: 250 ILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVE 309
LE +L+ I+ + D LI +G+SAT+ N+ LA WLNA ++ FR +PLE +
Sbjct: 153 RLETVLSSIRVINP--DALI--LGLSATISNVNELAQWLNASTVVSNFRAVPLELGII-- 206
Query: 310 NKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSS 369
Y K + I ++ G S++K + I +G L+F ++ E A++L
Sbjct: 207 ---YKK--RLITDSYERYLGQLDELSLIK---DIINDGGQALVFRNSRKNAEKYAEML-- 256
Query: 370 TFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTL 429
+H+ E N G+ + L K I G+ YHHAGL+
Sbjct: 257 ---------------------IQHLPE-FNDFNND--GMPESLVKMIRHGIAYHHAGLSN 292
Query: 430 DERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPV----FQKQPINILSYKQMS 485
++R IE FK+G I+V+ AT TL++GVNLPAR VIIR +PI+ + +QM
Sbjct: 293 EDRRNIEEMFKNGYIKVISATPTLAAGVNLPARLVIIRDITRYSNGYSRPISNIEIQQML 352
Query: 486 GRAGRMGRDTKGES-ILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNI 544
GRAGR D G I S A + G+ +PV S ++++ IL +I+S +
Sbjct: 353 GRAGRPKYDKMGYGYIYAASPASYDAAKKALSGEPEPVISKMDSQRLMRFNILALISSGM 412
Query: 545 SCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGK 604
+ ++L+L+ + TL++ QK++ + +E L L+ I + Y AT LG+
Sbjct: 413 ASRMEDLILFYNETLMAIQKDV--DDYYIESALYFLKENGFI-----DGDVTYNATRLGR 465
Query: 605 ACLSSSMAPNDGLTL 619
+ P L L
Sbjct: 466 LTSDLYIDPETALIL 480
>UniRef50_Q3IU46 Cluster: ATP-dependent DNA helicase 1; n=1;
Natronomonas pharaonis DSM 2160|Rep: ATP-dependent DNA
helicase 1 - Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678)
Length = 747
Score = 185 bits (450), Expect = 9e-45
Identities = 142/481 (29%), Positives = 242/481 (50%), Gaps = 40/481 (8%)
Query: 95 GLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
G+P + E GI ++ Q A + + D +LV S PT++GKTLVA+ L + +
Sbjct: 8 GVPPWFADHLREEGIESLYPPQAAAV--DAGVADGESLVASVPTASGKTLVAQ-LAMLSA 64
Query: 155 LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNVHVAICTIE 213
++R + I+P ++ EK G+ V GS G + + + + T E
Sbjct: 65 IDRGGTALYIVPLRALASEKREEFA-AFEEYGLSVGVTTGSYEDTGEWLADKDIIVATSE 123
Query: 214 KANSMINRLLDNGN--IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQV 271
K +S++ NG I+DL VV DE+HL+ D++RG LE+ L K++ V +QV
Sbjct: 124 KVDSLVR----NGAPWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRRVNPN----LQV 175
Query: 272 IGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVS 331
+ +SAT+ N +A WL+AEL +++RPI L + +Y + + + V
Sbjct: 176 VALSATVGNAGEMAEWLDAELVDSSWRPIELRK-----GVHYGQ-ALHFGDGTQQELPVQ 229
Query: 332 CNDSVLK-ICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLN 390
+ + + ET+ EG S L+F ++ E A+ L+ T G + E R+ L+
Sbjct: 230 RTEKPTEAVVRETLDEGGSTLVFVNSRRNAEGAAKRLAKTTVD-GLDADE-----RAALS 283
Query: 391 SEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVAT 450
S + E + + ++ D L + G +HHAG + + R ++E AF+ I+ + AT
Sbjct: 284 S--LAEEIRAVSDTETSDD--LADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICAT 339
Query: 451 STLSSGVNLPARKVIIR------SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICS 504
TL++GVN PAR+V++R QP+++L QM GRAGR GRD GE++L+
Sbjct: 340 PTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLAD 399
Query: 505 EAEK--KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSA 562
++ ++ + D +PV+S + + +L +AS + S+ LL + D TL +
Sbjct: 400 SHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSRSALLSFLDRTLYAT 459
Query: 563 Q 563
Q
Sbjct: 460 Q 460
>UniRef50_A7DEV7 Cluster: DNA polymerase I; n=4;
Alphaproteobacteria|Rep: DNA polymerase I -
Methylobacterium extorquens PA1
Length = 1122
Score = 184 bits (449), Expect = 1e-44
Identities = 127/420 (30%), Positives = 215/420 (51%), Gaps = 37/420 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E ++ +L+ E GI +D+ ++SRL D L+++ + G F +S K +
Sbjct: 718 LERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQEDAGERFQVSSPKQIGD 777
Query: 1137 VL----GIYNGRKT--------STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
VL G+ +KT +T L+ + ++ +R+L+ + + L +
Sbjct: 778 VLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQH 837
Query: 1185 ACIYSEG-DRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
A G +R+ +S++ T TGR++ +PNLQN IP+R T I
Sbjct: 838 A---DRGTNRVHTSFALAATTTGRLSSSDPNLQN------IPIR------TEEGRRI--- 879
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F A G ++SADY Q+E+RLL H ++ L + +D+ + A++ V +
Sbjct: 880 -RRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 938
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
+ DLR++AK + +GIIYG+ L+ L + EAS F+ + +P IR + +
Sbjct: 939 MTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRS 998
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
C+ +G+V TL GR + P I S+ S R + ERQA+N IQG+AADI + AM +ED +
Sbjct: 999 CREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALE 1058
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED----TVELKVPLPVKLKCGYTW 1478
+ R++LQ+HDEL++EV + I ++ VME+ + L+VPL V+ + W
Sbjct: 1059 AKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNW 1118
>UniRef50_P52027 Cluster: DNA polymerase I; n=2; Deinococcus|Rep: DNA
polymerase I - Deinococcus radiodurans
Length = 956
Score = 184 bits (449), Expect = 1e-44
Identities = 127/408 (31%), Positives = 206/408 (50%), Gaps = 33/408 (8%)
Query: 1084 ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----G 1139
+L E+ G+ VD + + L L+ + + G F+ S K + VL
Sbjct: 565 VLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLE 624
Query: 1140 IYNGRKT------STRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIYSEG 1191
+ + +KT ST S L PI +V+ +R+L+ + L P+ +
Sbjct: 625 LASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPN--LVNPHT 682
Query: 1192 DRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAA 1250
R+ ++++ T TGR++ PNLQN IP+R + E+ R F A
Sbjct: 683 GRLHTTFAQTAVATGRLSSLNPNLQN------IPIR-----SELGREI-----RKGFIAE 726
Query: 1251 PGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQK 1310
G +++ADY Q+E+RLL H ++D + + D+ + AA + E VD + R+
Sbjct: 727 DGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEATVDANQRRA 786
Query: 1311 AKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVE 1370
AK + +G++YGM LS L + EA+ F++ + TYP IR + ++ + G+VE
Sbjct: 787 AKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRRYINHTLDFGRTHGYVE 846
Query: 1371 TLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRL 1430
TL GRRRY+P ++S +R ER A N IQG+AADI K AM ++ +++ R+
Sbjct: 847 TLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAMVQLDPQLDAIG--ARM 904
Query: 1431 ILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+LQ+HDEL+ E + +L K VME+ V+LKVPL V++ G W
Sbjct: 905 LLQVHDELLIEAPLDKAEQVAALTKKVMENVVQLKVPLAVEVGTGPNW 952
>UniRef50_Q7VLZ7 Cluster: DNA polymerase I; n=6; Pasteurellaceae|Rep:
DNA polymerase I - Haemophilus ducreyi
Length = 962
Score = 184 bits (448), Expect = 2e-44
Identities = 127/414 (30%), Positives = 213/414 (51%), Gaps = 30/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L+ E +G+++D + + ++ ++ G FN S+K + +
Sbjct: 563 IEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAFNLASTKQLQE 622
Query: 1137 VL----GIYNGRKT-----STRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKA-- 1185
+L + +KT ST + VL +V + L+K+ T+K
Sbjct: 623 ILFEKLALPVLKKTPKGAPSTNEEVLEQLAQQ-GHLVPKLLSEHRALSKLKSTYTDKLPK 681
Query: 1186 CIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I R+ +SY T TGR++ +PNLQN IP+R T + I R
Sbjct: 682 MINQHTGRVHTSYHQAVTTTGRLSSSDPNLQN------IPIR------TEAGRRI----R 725
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A G +V+ADY Q+E+R++ H + D + + D+ ++ AA + EV
Sbjct: 726 QAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVT 785
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+ R+ AK + +G+IYGM + L+ L +S EA +M + + YP ++ F + + E
Sbjct: 786 SEQRRSAKAINFGLIYGMSDFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESAS 845
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+G+VETL GRR YLP+I S+ RR AER A+N +QG+AADI K AM SI+ I +
Sbjct: 846 VKGYVETLFGRRLYLPEIKSNNAIRRKAAERLAINAPMQGTAADIIKIAMISIDKQIRA- 904
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ ++I+Q+HDELI+EV + + L+K+ ME + +KVPL ++ G W
Sbjct: 905 DQNIKMIMQVHDELIFEVKQECIEYYTGLIKTEMEKAIAMKVPLIAEVGVGANW 958
>UniRef50_Q7NMX9 Cluster: DNA polymerase; n=3; Cyanobacteria|Rep: DNA
polymerase - Gloeobacter violaceus
Length = 938
Score = 184 bits (448), Expect = 2e-44
Identities = 131/415 (31%), Positives = 205/415 (49%), Gaps = 35/415 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ + +L+ E GI +DK + L ++ + L+++A+ + G FN S K ++
Sbjct: 542 IEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYTLAGSKFNLGSPKQLSD 601
Query: 1137 VL------GIYNGRKTS----TRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L RKTS T +VL + PI ++ +R L + K Y
Sbjct: 602 LLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILSYRTLAKL--KSTYVDALP 659
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ DR+ + ++ T T TGR++ PNLQN+P S R
Sbjct: 660 LLVDPRTDRVHTDFNQTVTTTGRLSSSNPNLQNIPVRTSFSRRI---------------- 703
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F PG ++V+ADY Q+E+R+L H +++ L ++ DV A + EV
Sbjct: 704 RRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAFQTGGDVHTLTARLL--LGREEV 761
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R+ AK + YG++YGMG + ++ VS EA F+ +F R YPA+ F +
Sbjct: 762 TSEERRLAKIINYGVVYGMGARRFARETGVSATEAEDFIKAFYRRYPAVFGFMEQTRRMA 821
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
QG+VETL GRRRY + R A R A N IQG+AADI K AM +E +
Sbjct: 822 VEQGYVETLLGRRRYFRGLGQLNQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTL-- 879
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ RL+LQ+HDEL++E+ + L++S ME+ ++L VPL V+L G W
Sbjct: 880 AGRRTRLLLQVHDELVFEMPPEERPEVEPLIRSGMENALDLLVPLKVELNAGPNW 934
>UniRef50_A1RXH5 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Thermofilum pendens Hrk 5|Rep: DEAD/DEAH box
helicase domain protein - Thermofilum pendens (strain
Hrk 5)
Length = 739
Score = 184 bits (448), Expect = 2e-44
Identities = 143/421 (33%), Positives = 214/421 (50%), Gaps = 36/421 (8%)
Query: 97 PIEISKKYEER-GITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL 155
P E+ +K EER I ++ Q+A + K + D N+V SAPT++GKTLVAE+ +K +L
Sbjct: 13 PDEVVRKIEERFNIKTLYPTQVAAV--EKGVLDGKNIVLSAPTASGKTLVAELAALKHLL 70
Query: 156 ERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAG-GMQNVHVAICTIEK 214
K V+ + P ++ EK + G R G A + V + T EK
Sbjct: 71 NGGK-VLYLAPLRALASEKFKEFKEFFGEFGYRSVLSTGDYDTADPSLGKYDVIVTTNEK 129
Query: 215 ANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGM 274
A+S++ D+ V+ DE+HLLG + RG LE+LLT+I S+ Q++G+
Sbjct: 130 ADSLLRHSAPW--FPDVTLVIADEVHLLGSEKRGATLEVLLTRILL----SEDPPQILGL 183
Query: 275 SATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCND 334
SAT+ NLE +A WLNA +RP+ L E YYD Y A S V
Sbjct: 184 SATIGNLEEVARWLNATPVSVEWRPVLLRE-----GVYYDGTIFYADGASRSVEDVG--S 236
Query: 335 SVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHI 394
++ + + ++E L+F T+ S A+ LS K LR H+
Sbjct: 237 ALANLVHDVLREEGQALVFSPTRRAASSDAKKLSVYTRKF----------LRDS-ERRHL 285
Query: 395 LEALEQLKNSPVG-LDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTL 453
EA ++ +S L L + + GV +HHAGL+ D R+ +E F+ G ++ +VAT TL
Sbjct: 286 KEAARKVLSSHADKLTNELAELMLHGVAFHHAGLSGDARETVEQLFREGFLKTVVATPTL 345
Query: 454 SSGVNLPARKVIIRS------PVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAE 507
++GVNLPAR+VII + + I ++ YKQM+GRAGR D +GE+ILI E
Sbjct: 346 AAGVNLPARRVIITDYRRYNVELGYHESIPVMEYKQMAGRAGRPQYDREGEAILIARNME 405
Query: 508 K 508
+
Sbjct: 406 E 406
>UniRef50_Q2FNA5 Cluster: DEAD/DEAH box helicase-like; n=4;
Methanomicrobiales|Rep: DEAD/DEAH box helicase-like -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 799
Score = 183 bits (446), Expect = 3e-44
Identities = 151/519 (29%), Positives = 256/519 (49%), Gaps = 51/519 (9%)
Query: 96 LPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL 155
LP + +GI ++ Q C+ K L + NL+ S PT++GKTL+AE + + + +
Sbjct: 8 LPDSFIRACHAKGIRSLYPPQAECI--EKGLLEGKNLLISIPTASGKTLLAE-MAMWSRI 64
Query: 156 ERQKKVIIILPFVSIVREKMFYLQNILSSSG-IRVEGFMGSQSPAGGMQNVH-VAICTIE 213
K + I+P ++ EK + S G IRV G + + + T E
Sbjct: 65 AAGGKCLYIVPLRALASEKY----DEFSKKGVIRVGIATGDLDRTDAYLGENDIIVATSE 120
Query: 214 KANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIG 273
K +S++ + + +V+DE+HL+G +NRG LE+++TK++Y ++Q+IG
Sbjct: 121 KTDSLLRNRTPW--LSQITCIVLDEVHLIGSENRGATLEMVITKLRYTNP----VMQIIG 174
Query: 274 MSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKY-ILEAKSSNYGVSC 332
+SAT+ N LA WL+A L +T+RP+ L + YY NGK +++ G +
Sbjct: 175 LSATIGNPAQLAEWLDATLITSTWRPVDLRQ-----GVYY--NGKIRFSDSERPIQGKTK 227
Query: 333 NDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSE 392
+D L +CL+TI+EG L+F ++ E A+ + G + +S+
Sbjct: 228 HDD-LNLCLDTIEEGGQCLVFVSSRRNAEGFAKKAA-------------GALKAGSPDSK 273
Query: 393 HILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATST 452
+ + L +L++ G +L + G +HHAGL ER IIE F++G I V+ AT T
Sbjct: 274 ALAQELRRLRDRDEG--NVLADCVERGAAFHHAGLIRQERTIIEEGFRNGYIEVIAATPT 331
Query: 453 LSSGVNLPARKVIIR-----SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAE 507
L++G+NLPAR+VIIR + PI + Y QM+GRAGR D GE++L+ +A
Sbjct: 332 LAAGLNLPARRVIIRDYNRFASGLGMVPIPVGEYHQMAGRAGRPHLDPYGEAVLLAKDAP 391
Query: 508 --KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQ-K 564
+++ + + + V S IL +IA+ + ++ L + + T Q
Sbjct: 392 SVERLFETFIDAEAERVDSQCVDDASLCAHILSLIATGFAHDQEALSSFMERTFYFFQHP 451
Query: 565 EILSQNLILEDTLKELENYELIRIQNNHSENHYVATALG 603
+ S ++ D ++ L ++ EN AT LG
Sbjct: 452 KTRSLPRLVADAIRFLTTAGMV----EERENTLSATRLG 486
>UniRef50_Q97AI2 Cluster: Putative ski2-type helicase; n=2;
Thermoplasma|Rep: Putative ski2-type helicase -
Thermoplasma volcanium
Length = 674
Score = 183 bits (446), Expect = 3e-44
Identities = 146/439 (33%), Positives = 234/439 (53%), Gaps = 47/439 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
N++ S PT+AGKTL+A +T +++ K I I+P S+ EK L L G+RV+
Sbjct: 39 NIMVSVPTAAGKTLIAYSAIYET-FKKKLKSIYIVPLRSLAMEKYEELSR-LRELGMRVK 96
Query: 191 GFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGY 249
+G+ ++ V I T EKA+S+++ D +E++G +V+DE+H++GD+ RG
Sbjct: 97 LSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGDEYRGP 154
Query: 250 ILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVE 309
LE ++T +YV ++ ++I +SAT+ N +A WLNA L ++FRP+PL+ L
Sbjct: 155 TLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASLIKSSFRPVPLKVGILYR 210
Query: 310 NKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSS 369
N+ + +G +A+S V N + ET+ +G VLIF ++ R E +A+ LS
Sbjct: 211 NRLF-LDG----DARSD---VDIN----LLVKETVDDGGQVLIFVSSRKRAEDMAKNLSQ 258
Query: 370 TFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTL 429
F I +++SE ++ V D +L + + GV +HHAGL+
Sbjct: 259 LFDPIN----------DLKVSSE----------DANV-YDDLLNEMLPHGVSFHHAGLSN 297
Query: 430 DERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPV-FQKQPINILS---YKQMS 485
++R IE AF+ ++V+VAT TL++GVNLPAR VI++ + I LS KQM
Sbjct: 298 EQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMI 357
Query: 486 GRAGRMGRDTKGESILICSEAEK-KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNI 544
GRAGR G D G I+ + A ++ + + +PV S I EK L IA +
Sbjct: 358 GRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGL 417
Query: 545 SCSKQELLLYTDCTLLSAQ 563
+ S+ E+ + T AQ
Sbjct: 418 ATSQVEMEEFYRSTFYYAQ 436
>UniRef50_Q6MEQ2 Cluster: Probable DNA polymerase I; n=1; Candidatus
Protochlamydia amoebophila UWE25|Rep: Probable DNA
polymerase I - Protochlamydia amoebophila (strain UWE25)
Length = 891
Score = 183 bits (445), Expect = 4e-44
Identities = 125/415 (30%), Positives = 205/415 (49%), Gaps = 30/415 (7%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ +L +L+ E +GI +D + L + L++ + + G FN NS K ++
Sbjct: 492 DLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYALAGEIFNLNSPKQLS 551
Query: 1136 KVL----GIYNGRKTSTRKSV------LSSHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
++L GI +K +T S + H PI+ ++ +R L + + + L +
Sbjct: 552 QILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYRTLEKLRSTYVNSLPLQ- 610
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ ++ RI +++ + TGR++ +PNLQN+P + + R
Sbjct: 611 -VNAKTGRIHCNFNQSMAATGRLSCQDPNLQNIPVRTEVGRQI----------------R 653
Query: 1245 NVFRAAPGS-VMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
FR +SADY Q+E+RLL H SED L + S+ D+ K A+ DVP +V
Sbjct: 654 EAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQV 713
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R +AK + +G+IYG L+ L + A+ F+ + Y ++ F ++ +
Sbjct: 714 SSEQRYQAKAVNFGLIYGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKEFLEACKQSA 773
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ G T+ GR R LP+I S R TA+R AVNT IQG+ AD+ K AM I +
Sbjct: 774 RETGKAVTMYGRERLLPEIRSQNAMIRATADRFAVNTPIQGTQADLIKMAMLKINKLLIQ 833
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
K +ILQ+HDELI+EV L+K+ ME+ + LKVPL V + G W
Sbjct: 834 EKKKGFMILQIHDELIFEVPNQELESISHLVKNTMENIINLKVPLIVNIHIGKNW 888
>UniRef50_Q1AUF6 Cluster: DNA polymerase I; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: DNA polymerase I - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 843
Score = 183 bits (445), Expect = 4e-44
Identities = 131/441 (29%), Positives = 216/441 (48%), Gaps = 36/441 (8%)
Query: 1051 VKAWAIEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDS 1110
V+A A + +E ++ L Y VE+ + +L+ E G+ VD + + ++
Sbjct: 419 VRALAPRLDAELREMGLSRLYYE---VELPLADVLAEMERVGMPVDARTLEEVGREIERR 475
Query: 1111 QDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKT----STRKSVLS--SHNTPI 1160
L++ F+ G+ FN S K +++VL G+ R+T ST VL + PI
Sbjct: 476 IAELEEAIFEDVGHPFNIGSPKQLSEVLFEELGLPPVRRTKTGYSTDAKVLQQLALEHPI 535
Query: 1161 SSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPR 1219
+ ++ WR+L + + L + + E RI ++ + T T TGRI+ PNLQN+P
Sbjct: 536 AERIIAWRELAKLKGTYVEGLLK---LVGEDGRIHTTLNQTTTATGRISSDSPNLQNIPV 592
Query: 1220 TFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTR 1279
+R R+ F A+PG ++V ADY Q+E+R+L H S + AL
Sbjct: 593 RTETGMRI----------------RDAFTASPGRLLVVADYSQIELRILAHMSREPALVE 636
Query: 1280 IMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHL-DVSEMEA 1338
K+ D+ AA DV V +LR++AK + +GI+YG+ L+ L +V EA
Sbjct: 637 AFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEA 696
Query: 1339 SLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAV 1398
++ + +P + F + + E + G+ TL GRRRY+P++ + + R ER A
Sbjct: 697 DRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLFGRRRYVPELRNKNKNVRKLGERIAF 756
Query: 1399 NTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVM 1458
N +QGSAADI K AM + + +++Q+HDEL+++V +L M
Sbjct: 757 NARVQGSAADIIKVAMVDLAPRLGPLGAD--MLMQVHDELVFDVDRDRVEEVAALAAERM 814
Query: 1459 EDTVELKVPLPVKLKCGYTWG 1479
+L PL V++K G WG
Sbjct: 815 VAAYDLDPPLEVEVKAGERWG 835
>UniRef50_A5EWG4 Cluster: DNA polymerase I; n=18;
Gammaproteobacteria|Rep: DNA polymerase I - Dichelobacter
nodosus (strain VCS1703A)
Length = 901
Score = 183 bits (445), Expect = 4e-44
Identities = 135/436 (30%), Positives = 217/436 (49%), Gaps = 39/436 (8%)
Query: 1057 EMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQK 1116
++ SE ALYE NVE + +IL E G+ + + ++ ++ LQK
Sbjct: 486 KLASEPTLQALYE------NVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQK 539
Query: 1117 KAFKICGYHFNFNSSKDVAKVL------GIYNGRKT---STRKSVLSS----HNTPISSI 1163
+A+++ G FN +S K + ++L + + T ST + VL + + I
Sbjct: 540 QAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQASTNEEVLQKLAELRQSALPEI 599
Query: 1164 VMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFS 1222
++ +R L + + L E I + R+ +SY T TGR++ +PNLQN
Sbjct: 600 ILNYRALGKLKSTYTDKLPE--LIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQN------ 651
Query: 1223 IPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMK 1282
IP+R SDE R F A G +++ADY Q+E+R++ H S+D L R +
Sbjct: 652 IPIR--------SDEGRRI--RQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQRAFQ 701
Query: 1283 SDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFM 1342
D+ + AA V VD + R+ AK + +G+IYGM L++ L++S +A+ ++
Sbjct: 702 LQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAAEYI 761
Query: 1343 DSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMI 1402
D + YP + + S + ++QG+V TL GRR Y+PDI + RR AER A+N +
Sbjct: 762 DKYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAINAPM 821
Query: 1403 QGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTV 1462
QGSAADI K AM + + RL++Q+HDEL++EV + + +ME +
Sbjct: 822 QGSAADIIKLAMVQFWQTYGA-QKECRLLMQVHDELVFEVATAALDIWQPRITHIMEHAL 880
Query: 1463 ELKVPLPVKLKCGYTW 1478
L VPL V W
Sbjct: 881 PLSVPLIVDCGVSKDW 896
>UniRef50_Q8IS90 Cluster: DNA polymerase I type A; n=3;
Leishmania|Rep: DNA polymerase I type A - Leishmania
major
Length = 931
Score = 183 bits (445), Expect = 4e-44
Identities = 106/284 (37%), Positives = 159/284 (55%), Gaps = 5/284 (1%)
Query: 1202 TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYC 1261
T TGR++ EPNLQN+PR I D E R F A G V++S DY
Sbjct: 641 TDTGRLSCVEPNLQNLPRN-GITAAVAGNDAEEDGEEDLLGFRRCFVATDGCVLLSIDYE 699
Query: 1262 QLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYG 1321
Q+E+R+L H D+AL + + D+ ++IA + V + R+ AK++ +G++YG
Sbjct: 700 QIELRVLAHLCGDAALVEALTTSADIHRAIAEVV--FKKKPVSTEERRLAKRVVFGLLYG 757
Query: 1322 MGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPD 1381
G KTL+ H+ V+ A +P I + + VIEE + GFV TLSGR RYLPD
Sbjct: 758 AGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNGFVRTLSGRLRYLPD 817
Query: 1382 ITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSI-EDGINSFNPKP-RLILQMHDELI 1439
I S + SRR+ AERQA N+++QGSAAD+ K AM ++ ++ + ++ L+ Q+HDE++
Sbjct: 818 IRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMV 877
Query: 1440 YEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDE 1483
+ V + + L+ S M ++L VPL V K G + G L E
Sbjct: 878 FMVRKELLPMVVPLVSSAMSHAMQLLVPLSVTAKFGDSLGNLQE 921
>UniRef50_Q7MA76 Cluster: DNA POLYMERASE I; n=3;
Epsilonproteobacteria|Rep: DNA POLYMERASE I - Wolinella
succinogenes
Length = 898
Score = 182 bits (443), Expect = 7e-44
Identities = 140/419 (33%), Positives = 210/419 (50%), Gaps = 33/419 (7%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
A ++E + L E GI VD E +RL +V L + F G FN NS++
Sbjct: 501 AESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHAGGEFNLNSTQQ 560
Query: 1134 VAKVL----GIYNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTE 1183
+ VL + +G+KT ST + VLS PI ++ +R+L + + + PLT
Sbjct: 561 LGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYRELFKLKSTYIEPLTR 620
Query: 1184 KACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
A + + RI +S+ T T TGR++ PNLQN+P T + I
Sbjct: 621 FA-LQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIPV------------KTEAGRKI--- 664
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F A+ G++++S DY Q+E+RLL HFS+D AL K+ D+ A E +
Sbjct: 665 -RQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFGEREAK 723
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
R AK + +G+IYGMG++ LS+ L +S EA ++DS+ ++P ++ F K+ E
Sbjct: 724 AH---RGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFASFPTVKSFLKAQEEF 780
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
G+ ETL GRRRY + ++ R+AVN + QGSAAD+ K AM I
Sbjct: 781 ALEHGYTETLLGRRRYF-EFQQAPEYQKAAYLREAVNCIFQGSAADLIKLAMNEIRRRF- 838
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGAL 1481
+ L+LQ+HDELI+E + + + VME L+VPL + G WGAL
Sbjct: 839 AQEESLWLLLQVHDELIFEAPKEHAEALARELALVMEGIHPLRVPLQCGISLGEHWGAL 897
>UniRef50_A6G5W6 Cluster: DNA polymerase I; n=1; Plesiocystis pacifica
SIR-1|Rep: DNA polymerase I - Plesiocystis pacifica SIR-1
Length = 933
Score = 181 bits (441), Expect = 1e-43
Identities = 129/413 (31%), Positives = 204/413 (49%), Gaps = 30/413 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ + ++L+ E G+++D+ + R ++ D L+ + GY + NS K + K
Sbjct: 535 VELPLARVLARLERRGVLLDEAELQRQNDELGGQIDALKSTLQEEAGYAVDPNSPKQLGK 594
Query: 1137 VL----GIYNGRKTSTRKSVLS------SHNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
+L G+ +KT T S + S PI +++ +R L + K Y T
Sbjct: 595 LLFEERGLPAKKKTKTGYSTDAQTLEELSLLDPIVKVILDYRSLAKL--KNTYLDTLPKL 652
Query: 1187 IYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
+ R+ + + TGR++ EPNLQN IP+R T I R
Sbjct: 653 VNPNTGRLHTHFRQAVAATGRLSSREPNLQN------IPIR------TEQGRRI----RR 696
Query: 1246 VFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDD 1305
F A G +V+ DY Q+E+R+L H S+D L + DV + AA +VPE EV
Sbjct: 697 GFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTS 756
Query: 1306 DLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKR 1365
+ R+ AK + +G+IYG L++ L + + A ++ ++ + P + + ++I+ K
Sbjct: 757 EQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRAGKYIKAYFKKIPGVSSYMNALIDTAKD 816
Query: 1366 QGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFN 1425
GF ET+ GRRR +P++ R+ ER A NT IQGSAADI K AM +E ++
Sbjct: 817 TGFAETIFGRRRRIPELRRRGAVARSYGERIARNTPIQGSAADILKIAMVEVERLLDD-K 875
Query: 1426 PKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
P R++L +HDELI+E I L+K ME + L VPL V+ G W
Sbjct: 876 PWARMLLTVHDELIFECETDKVQELIGLVKPAMEKSASLDVPLLVEGGAGANW 928
>UniRef50_A7D7W3 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Halorubrum lacusprofundi ATCC 49239|Rep: DEAD/DEAH
box helicase domain protein - Halorubrum lacusprofundi
ATCC 49239
Length = 824
Score = 181 bits (440), Expect = 2e-43
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 38/523 (7%)
Query: 95 GLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
GLP + + E G+ E++ Q A + + D +LV + PT++GKTL+AE+ + ++
Sbjct: 8 GLPAGVGEALEAEGVAELYPPQEAAV--EAGVADGESLVAAVPTASGKTLIAELAMLSSI 65
Query: 155 LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIE 213
ER K + I+P ++ EK + G+ V G+ +S + + + T E
Sbjct: 66 -ERGGKALYIVPLRALASEKKTEFER-WEEFGVTVGVSTGNYESDGEWLATRDIIVATSE 123
Query: 214 KANSMINRLLDNGN--IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQV 271
K +S+I NG I+DL VV DE+HL+ D NRG LE+ L K++ V +Q
Sbjct: 124 KVDSLIR----NGAPWIDDLTCVVSDEVHLVDDPNRGPTLEVTLAKLRKVNPG----LQT 175
Query: 272 IGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVEN--KYYDKNGKYILEAKSSNYG 329
+ +SAT+ N + +A WL+AEL + +RPI L N + D + + + + +
Sbjct: 176 VALSATVGNADVIAEWLDAELVESDWRPIDLRMGVHFGNAIDFADGSKREVPVERGEDQT 235
Query: 330 VSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQL 389
L E +G S L+F ++ ES A+ L+ G R QL
Sbjct: 236 ARLVADALD--TEEDGQGGSSLVFVNSRRNAESSARKLTDV------TGPRLTDDERDQL 287
Query: 390 NSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVA 449
+ + + ++ D L + G +HHAGL ++R +E AF+ I+ + A
Sbjct: 288 --RELADEIRSGSDTDTASD--LADAVEQGSAFHHAGLRSEDRARVEDAFRDRLIKCISA 343
Query: 450 TSTLSSGVNLPARKVIIR------SPVFQKQPINILSYKQMSGRAGRMGRDTKGESILIC 503
T TL++GVN PAR+VI+R +P+++L QM GRAGR G D GE++L+
Sbjct: 344 TPTLAAGVNTPARRVIVRDWRRYDGEFGGMKPLDVLEVHQMCGRAGRPGLDPYGEAVLLA 403
Query: 504 SEAEKK--IGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLS 561
++A+ K + + D +PV+S + + +L +AS + ++ LL + D TL +
Sbjct: 404 NDADTKEELFERYLWADPEPVRSKLAAEPALRTHVLATVASGFASTRDGLLSFLDNTLYA 463
Query: 562 AQKEILSQNLILEDT-LKELENYELIRIQNNHSENHYVATALG 603
Q + + + DT L L + I + AT +G
Sbjct: 464 TQTDDEGRLAAVTDTVLDYLAVNDFIERDRDGGSESLTATGIG 506
>UniRef50_P46835 Cluster: DNA polymerase I; n=41; Bacteria|Rep: DNA
polymerase I - Mycobacterium leprae
Length = 911
Score = 180 bits (439), Expect = 2e-43
Identities = 119/413 (28%), Positives = 206/413 (49%), Gaps = 21/413 (5%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ V ++L++ E GI D L++ L + D + A+ + G N +S K +
Sbjct: 508 MELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQV 567
Query: 1137 VLGIYNGR-KTSTRKSVLSSHNTPISSIVMYWRK--LNAILT-----KILYPLTEKACIY 1188
VL G KT K+ ++ + S+ L +LT ++ +
Sbjct: 568 VLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHLLTHRDVTRLKVTVDGLLNAV 627
Query: 1189 SEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVF 1247
+ RI ++++ T TGR++ EPNLQN IP+R D + + N +
Sbjct: 628 AADGRIHTTFNQTIATTGRLSSTEPNLQN------IPIR-TNAGRQIRDAFVVGSENNGY 680
Query: 1248 RAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDL 1307
+ +++ADY Q+EMR++ H S D L + D+ +A+ +P ++ +L
Sbjct: 681 -----TELMTADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPEL 735
Query: 1308 RQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQG 1367
R++ K + YG+ YG+ L+ L +S EA L M+ + + +R + V+E+ ++ G
Sbjct: 736 RRRVKAMSYGLAYGLSAYGLATQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDG 795
Query: 1368 FVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPK 1427
+ T+ GRRRYLP++ S R AER A+N IQGSAADI K AM +++ +
Sbjct: 796 YTSTVLGRRRYLPELDSSNRQIREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLA 855
Query: 1428 PRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGA 1480
R++LQ+HDEL++EV + + ++++ M L VPL V + G +WGA
Sbjct: 856 SRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYPLDVPLEVSVGFGRSWGA 908
>UniRef50_Q057H2 Cluster: 5'-3' exonuclease domain of DNA polymerase
I; n=2; cellular organisms|Rep: 5'-3' exonuclease domain
of DNA polymerase I - Buchnera aphidicola subsp. Cinara
cedri
Length = 886
Score = 180 bits (438), Expect = 3e-43
Identities = 128/483 (26%), Positives = 242/483 (50%), Gaps = 33/483 (6%)
Query: 1015 KVDMKKYSGMDLAQLTIKVNNRQTKLKNLTLAQESCVKAWAIEMISEKQQNALYESYQNA 1074
K++ KK K N ++ K + + + + I + +K N + +N
Sbjct: 424 KLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIMQESLISLKIYFLFKK--NIKKKKRENF 481
Query: 1075 INVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDV 1134
+++ +L IL+ E +G+++ K+++ + + + L+KK FKI FN NSSK +
Sbjct: 482 QLIDMSLLPILAEIENNGVLIKKKILKKQKKNHEKTLKKLKKKIFKITKEKFNINSSKQL 541
Query: 1135 AKVL-------GIYNGR--KTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTE 1183
+L IY + ST + VL S + I++ +R + I+ L L +
Sbjct: 542 QNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRLIKKIINTYLRNLIK 601
Query: 1184 KACIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
I ++ +RI ++Y+ T TGR++ PNLQN+P I +
Sbjct: 602 S--INNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKL--------------- 644
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F ++++ADY +E+R++ H+S+D L + + + D+ S A+ + P +
Sbjct: 645 -RIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEK 703
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
+ R AK + + I+YG+ LS+ L++S ++ + + Y I+ F K+ +
Sbjct: 704 IKKYHRNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKT 763
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
K++G+++TL R+ Y+P+I S +N+A+R +N MIQ +A+DI K +M ++
Sbjct: 764 AKKRGYIKTLFKRKLYIPNINSKNIYLKNSAKRFCINLMIQNTASDIIKKSMITLHHLFK 823
Query: 1423 SFNPKP-RLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGAL 1481
PK ++I+Q+HDELI+E+ E K + I ++K +ME+ +L +PL + K G W +
Sbjct: 824 KKFPKDIKIIMQIHDELIFEIKEKKKDKIIDVIKKIMENNTKLIIPLYITTKIGKNWKEI 883
Query: 1482 DEV 1484
+
Sbjct: 884 KSI 886
>UniRef50_Q7VGK4 Cluster: DNA polymerase I; n=3;
Epsilonproteobacteria|Rep: DNA polymerase I -
Helicobacter hepaticus
Length = 912
Score = 179 bits (436), Expect = 5e-43
Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 38/421 (9%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
A +E +K+L E GI VD L+ L + L + F++CG FN NS +
Sbjct: 516 ANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETFNLNSPQQ 575
Query: 1134 VAKVL----GIYNGRKTS--------TRKSVLSSHNTPISSIVMYWRKLNAILTKILYPL 1181
+A +L G+ GR T +++ +H P+ ++++ +R++N + + + PL
Sbjct: 576 LAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAH--PVIALILDYREVNKLKSTYIEPL 633
Query: 1182 TEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIE 1240
++ RI +S+ + T TGR++ PNLQN+P +E +
Sbjct: 634 LRFGSA-NDKHRIYTSFLQSGTATGRLSSKSPNLQNIP--------------VRREEGRK 678
Query: 1241 FNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPE 1300
R F + G ++S DY Q+E+RLL HF +DS+L K D D+ AA V
Sbjct: 679 I--RQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGV-- 734
Query: 1301 GEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVI 1360
E+ R AK + +G+IYGMG+K L+Q L +S EA +++S+ +P I+ F +
Sbjct: 735 -ELAAQKRAIAKSINFGLIYGMGSKKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQK 793
Query: 1361 EECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDG 1420
E G+ +TL G RRY D + + R+ +N++ QGSAAD+ K +MC I
Sbjct: 794 EFLLENGYSQTLLGHRRYF-DFKNATDFMKANFLREGINSIFQGSAADLIKLSMCEIHKR 852
Query: 1421 INSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGA 1480
+ K ++LQ+HDELI+E + + +M EL+VPL + G W
Sbjct: 853 YGHSDFK--MLLQVHDELIFEAPQEKAHIYAQEAAQIMNHIYELEVPLKCGISIGKNWAE 910
Query: 1481 L 1481
L
Sbjct: 911 L 911
>UniRef50_Q4E329 Cluster: Mitochondrial DNA polymerase I protein A,
putative; n=2; Trypanosoma cruzi|Rep: Mitochondrial DNA
polymerase I protein A, putative - Trypanosoma cruzi
Length = 927
Score = 179 bits (436), Expect = 5e-43
Identities = 103/283 (36%), Positives = 159/283 (56%), Gaps = 7/283 (2%)
Query: 1202 TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYC 1261
T TGR++ EPNLQN+PR+ I DN+ E R F G ++S DY
Sbjct: 641 TDTGRLSCVEPNLQNLPRSKVIADN----DNSEPYEAEMATFRRCFAVPIGLTLLSVDYE 696
Query: 1262 QLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYG 1321
Q+E+R++ H S D+AL M + DV ++IA + V++ R AK++ +G++YG
Sbjct: 697 QIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSPVSVEE--RTLAKRVVFGMLYG 754
Query: 1322 MGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPD 1381
G +TL+ + V A M F+ +YP I + + VI++C+ GFV T++GR R LPD
Sbjct: 755 AGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVRTMTGRIRSLPD 814
Query: 1382 ITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIE-DGINSFNPKPRLILQMHDELIY 1440
I + ++R AERQA N++IQGSAAD+ K M ++E D + +N RL+ Q+HDE++
Sbjct: 815 INDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLYNGDVRLLAQIHDEIVL 874
Query: 1441 EVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDE 1483
V + L+ M V L VPL V ++ G + G L++
Sbjct: 875 SVPTHKLREVVPLVSRSMMHAVSLLVPLRVTVRIGQSLGELED 917
>UniRef50_Q4JW27 Cluster: DNA polymerase I; n=1; Corynebacterium
jeikeium K411|Rep: DNA polymerase I - Corynebacterium
jeikeium (strain K411)
Length = 859
Score = 179 bits (435), Expect = 6e-43
Identities = 132/414 (31%), Positives = 202/414 (48%), Gaps = 27/414 (6%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGY-HFNFNSSKDV 1134
++E+ + IL+ E GI VD + L D + A ++ G N +S K +
Sbjct: 457 DLEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQL 516
Query: 1135 AKVL-GIYNGRKTSTRKSVLSSHNTPISSIVMYWRK--LNAILTKILYPL---TEKACIY 1188
KVL ++ KT K+ S+ + + L ++ Y T I
Sbjct: 517 QKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTIDGLIE 576
Query: 1189 SEGD--RIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
+ GD RI ++++ TGR++ +PNLQN IP+R T + I R
Sbjct: 577 AVGDDGRIHTTFNQKGAATGRLSSSDPNLQN------IPVR------TDAGRKI----RA 620
Query: 1246 VFRAAPG-SVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F G +++ADY Q+EMR++ H SED+ L S D+ + + DVP EV
Sbjct: 621 AFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVT 680
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+LR++ K L YG++YG+ LSQ L +S EA MD++ + ++ + V+E K
Sbjct: 681 PELRRRVKALSYGLVYGLSAFGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAK 740
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
G+ ETL GRRRYLP++ S R AER A+N IQG+AADI K AM ++ I
Sbjct: 741 ETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQ 800
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
R++LQ+HDEL+ EV + L++ M+ +L+VPL V G W
Sbjct: 801 QLASRVLLQVHDELVVEVAPGELEQITELVEREMDAAAQLRVPLDVSAGTGDNW 854
>UniRef50_Q4FP67 Cluster: DNA polymerase I; n=4; Bacteria|Rep: DNA
polymerase I - Pelagibacter ubique
Length = 924
Score = 179 bits (435), Expect = 6e-43
Identities = 128/440 (29%), Positives = 214/440 (48%), Gaps = 42/440 (9%)
Query: 1064 QNALYESYQNAINV-EIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKIC 1122
+N E N + E ++KIL+ E+ GI +D + + L L+K+ FKI
Sbjct: 504 KNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKIS 563
Query: 1123 GYHFNFNSSKDVAKVLGIYNGRKTS----TRKSVLSSHNTPISSI----------VMYWR 1168
FN S K + ++ IYN K + TRK +++ + + + ++ WR
Sbjct: 564 KKEFNIASPKQLGEI--IYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWR 621
Query: 1169 KLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRY 1227
+++ + L E I R+ +S+ T TGR+ +PNLQN+P
Sbjct: 622 QVSKLKNTYSDALPEH--INPNTKRVHTSFLLAATTTGRLASSDPNLQNIP--------- 670
Query: 1228 LTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDV 1287
S++ + R F A G ++SADY Q+EMR+L +E L + ++ D+
Sbjct: 671 -----IKSEDGKDI--RKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDI 723
Query: 1288 FKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFER 1347
A+ +V +VD D+R+KAK + +GIIYG+ L++ ++VS EA F++++
Sbjct: 724 HSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFL 783
Query: 1348 TYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAA 1407
+P I+++ + I+ C++ G+V + GRR + I + RN ER A+N IQGSA+
Sbjct: 784 KFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSAS 843
Query: 1408 DIAKSAMCSIEDGINSF-NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE--- 1463
+I + AM + S N K +++LQ+HDELI+EV ++K M E
Sbjct: 844 EIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTESDL 903
Query: 1464 --LKVPLPVKLKCGYTWGAL 1481
PL V + G WG L
Sbjct: 904 HTFSTPLTVDVNTGDNWGIL 923
>UniRef50_O73946 Cluster: Putative ski2-type helicase; n=3;
Pyrococcus|Rep: Putative ski2-type helicase - Pyrococcus
furiosus
Length = 720
Score = 179 bits (435), Expect = 6e-43
Identities = 183/715 (25%), Positives = 328/715 (45%), Gaps = 70/715 (9%)
Query: 100 ISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK 159
I +ERGI + Q L + + + N + S PT++GKTL+AEI + +L +
Sbjct: 12 IKSTLKERGIESFYPPQAEALKSG--ILEGKNALISIPTASGKTLIAEIAMVHRILTQGG 69
Query: 160 KVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSM 218
K + I+P ++ EK Q+ G+RV G S + + I T EK +S+
Sbjct: 70 KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSL 128
Query: 219 INRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATL 278
+ + I+D+ +V DE+HL+G ++RG LE++L ++ K+ Q+IG+SAT+
Sbjct: 129 LRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILA---HMLGKA----QIIGLSATI 179
Query: 279 PNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLK 338
N E LA WLNAEL ++ +RP+ L + ++G + S++ D++ K
Sbjct: 180 GNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSI---DRFSSWEELVYDAIRK 236
Query: 339 ICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEAL 398
K+G LIF + + E +A LS K+ ++ + ++ + + E
Sbjct: 237 ------KKG--ALIFVNMRRKAERVALELSK---KVK------SLLTKPEIRA--LNELA 277
Query: 399 EQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVN 458
+ L+ +P ++ L K I GV +HHAGL DER ++E F+ G I+ +VAT TLS+G+N
Sbjct: 278 DSLEENPT--NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGIN 335
Query: 459 LPARKVIIRS----PVFQKQPINILSYKQMSGRAGRMGRDTKGESILI-CSEAEKKIGFN 513
PA +VIIR F + I I+ QM GRAGR D GE I++ S+ +++ +
Sbjct: 336 TPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNH 395
Query: 514 LMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLIL 573
+ G + + S + + +L +IA+ + +E+L + T + Q++ L
Sbjct: 396 YIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK---DTYSL 452
Query: 574 EDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLE 633
E+ ++ + + L EN ++ + L + P L+L K L ++
Sbjct: 453 EEKIRNILYFLL--------ENEFI-----EISLEDKIRP---LSLGIRTAK----LYID 492
Query: 634 TDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFI-IKCLRGLN 692
++ V I HL++L +T E ++E + K +
Sbjct: 493 PYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFD 552
Query: 693 MKHLDSNKLNIHKRFY----TALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAG 748
++ + ++F+ TAL L +NEV E+ K+ G + + + +
Sbjct: 553 DPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVY 612
Query: 749 MVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAGF 803
+ K LG + + + R+ +GI+ RAR L+++GF
Sbjct: 613 SLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667
>UniRef50_P59199 Cluster: DNA polymerase I; n=45; Bacilli|Rep: DNA
polymerase I - Streptococcus pneumoniae
Length = 877
Score = 177 bits (432), Expect = 1e-42
Identities = 124/410 (30%), Positives = 212/410 (51%), Gaps = 34/410 (8%)
Query: 1084 ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNG 1143
+L+ E+ GI+V KE + + + + L ++ +++ G FN NS K + +L G
Sbjct: 483 VLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLG 542
Query: 1144 RKTSTRKSVLSSHNT---------PISSIV---MYWRKLNAILTKILYPLTEKACIYSEG 1191
K + ++T PI+ IV + +R++ I + + L + I ++G
Sbjct: 543 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQD--WILADG 600
Query: 1192 DRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAA 1250
+I + Y T TGR++ +PNLQN+P +I R F
Sbjct: 601 -KIHTRYVQDLTQTGRLSSVDPNLQNIPARLE------------QGRLI----RKAFVPE 643
Query: 1251 -PGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPE-GEVDDDLR 1308
SV++S+DY Q+E+R+L H S+D L + + D+ S A + +V + R
Sbjct: 644 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDR 703
Query: 1309 QKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGF 1368
+ AK + +G++YG+ + LS +L +S EA ++D++ +P I+ + V+ E + +G+
Sbjct: 704 RNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGY 763
Query: 1369 VETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKP 1428
VETL RRR LPDI S + R AER A+N+ IQGSAADI K AM ++ + + +
Sbjct: 764 VETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQT 823
Query: 1429 RLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+++LQ+HDE++ EV ++ L+K ME+ ++L VPL G TW
Sbjct: 824 KMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQLSVPLIADENEGATW 873
>UniRef50_Q7UI29 Cluster: DNA polymerase I; n=2;
Planctomycetaceae|Rep: DNA polymerase I - Rhodopirellula
baltica
Length = 1027
Score = 177 bits (431), Expect = 2e-42
Identities = 130/422 (30%), Positives = 214/422 (50%), Gaps = 40/422 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKA--FKICGYHFNFNSSKDV 1134
VE+ + ++L+ E +GI V+ + ++++ R +D+ +A F G+ FN +S K +
Sbjct: 623 VEMPLTEVLAEMEFNGIHVNADTLAKM--SERFDKDIADLRALVFSAAGHEFNLDSPKQL 680
Query: 1135 AKVL----GIYNGRKT----STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
VL G+ +KT ST VLS + N I+ V+ +R+ + + L +
Sbjct: 681 GVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQYRQATKLKNTYIDALPQL 740
Query: 1185 ACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
C + R+ +S+ TGR++ EPNLQN IP+R T + I
Sbjct: 741 IC--DKTGRVHTSFRQDVAATGRLSSSEPNLQN------IPIR------TEQGKAI---- 782
Query: 1244 RNVFRAA-PGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
R F A G ++ ADY Q+E+R+L H+S D AL D D+ +AA + + E E
Sbjct: 783 RAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEESE 842
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
V DLR+ AK + +GI+YG L++ L +S EA +++ + + Y + F +
Sbjct: 843 VTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQRYSGVEAFMMDTLAR 902
Query: 1363 CKRQGFVETLSGRRRYLP---DITSHITSRRNT---AERQAVNTMIQGSAADIAKSAMCS 1416
C+ +G+V T+ GRRR + D+ S+R + ER A+N IQG+AAD+ K AM
Sbjct: 903 CRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLR 962
Query: 1417 IEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGY 1476
+ + + + + RL+LQ+HDEL+ E + ++ M +EL VPL V + G
Sbjct: 963 VHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDTIREAMTSVMELDVPLKVDVAHGR 1022
Query: 1477 TW 1478
TW
Sbjct: 1023 TW 1024
>UniRef50_Q2I6L4 Cluster: PolI DNA polymerase; n=1; uncultured delta
proteobacterium DeepAnt-32C6|Rep: PolI DNA polymerase -
uncultured delta proteobacterium DeepAnt-32C6
Length = 857
Score = 177 bits (431), Expect = 2e-42
Identities = 128/414 (30%), Positives = 198/414 (47%), Gaps = 31/414 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
V++ + ++L+ EL G+ V+ + + + R + L+ + ++ G FN S K +
Sbjct: 459 VDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAGREFNVASPKQLGV 518
Query: 1137 VL------GIYNGRKT--STRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKAC 1186
VL + KT ST VL + PI+ +++ RKL +LT Y +A
Sbjct: 519 VLFEELNLPVIKRTKTGYSTAAEVLERLTREHPIAGLLLQHRKLAKLLTT--YTEVLRAA 576
Query: 1187 IYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
I R+ ++ T+ TGR+ P++Q P T + I R
Sbjct: 577 INPVTGRVHPTFQQTYAATGRLISTNPDIQKTPV------------RTPEGKRI----RR 620
Query: 1246 VFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAAS-WSDVPEGEVD 1304
F APG ++SAD+ Q+E+RLL HFS D L D DV + AA + VPE V
Sbjct: 621 AFIPAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEA-VT 679
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
D R AK + + IYG G L Q L + EA ++ + + Y +R + IE
Sbjct: 680 DAQRSVAKTVNFATIYGQGATALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGAL 739
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
G+VETL GRRR +P+++S+ R R A NT IQGSAAD+ K M ++ +
Sbjct: 740 ASGYVETLLGRRRVIPELSSNSAMVRQVGMRMAANTPIQGSAADLCKLVMLTLAKRFQTR 799
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ R++LQ+HDEL++E L++ ME +L+VPL V + G W
Sbjct: 800 GLQTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVGDLRVPLRVHIGVGANW 853
>UniRef50_Q8TH00 Cluster: Predicted Superfamily II helicase; n=1;
Methanopyrus kandleri|Rep: Predicted Superfamily II
helicase - Methanopyrus kandleri
Length = 711
Score = 177 bits (431), Expect = 2e-42
Identities = 148/532 (27%), Positives = 266/532 (50%), Gaps = 56/532 (10%)
Query: 96 LPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL 155
LP + + + +GI E+F Q + K LFD NL+ +APT++GKTL+AE+ + ++
Sbjct: 14 LPEHVREYLDRKGIWELFPPQREAV--EKGLFDDENLLIAAPTASGKTLLAEMRALHELI 71
Query: 156 ER--QKKVIIILPFVSIVREKMFYLQNILS---SSGIR--VEGFMGSQSPAGGMQNVHVA 208
E + +V+ ++PF ++ REK L N++ G+ +E G +
Sbjct: 72 ESHGETRVVYVVPFRALAREKYEELTNVIEFCREKGLEPTIEISTGDVRRPIRELRPGIT 131
Query: 209 ICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL 268
+ T EK ++ + +E++ +V+DE+H++GD+NRG E L+ ++ K
Sbjct: 132 VTTAEKLDASLRSR--PSLVEEVDLLVLDEVHIVGDRNRGATYEALIALVRTFREK---- 185
Query: 269 IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNY 328
+ ++ +SAT+ N E LA WL+A I+ +RP+ LE + +K+ K
Sbjct: 186 VSLLALSATVGNAEELADWLDATPVISDWRPVKLEHRIVEVPSASEKDAK---------- 235
Query: 329 GVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQ 388
V K+ + ++EG L+F ++ R + A+ LS T + E + +
Sbjct: 236 -------VRKLIRKCLREGGQALVFLYSRRRAMTEAKNLSRTVSGLLSEDE------KKE 282
Query: 389 LNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLV 448
L + + E + +L +IL + GV +HHAGLT ++R ++E AF+ G ++V+V
Sbjct: 283 LRT--LAERVSELGEGEE--TEILAYAVMRGVAFHHAGLTAEQRALVEDAFREGLLKVVV 338
Query: 449 ATSTLSSGVNLPARKVIIRSPVFQKQPINIL-----SYKQMSGRAGRMGRDTKGESILIC 503
+T TL++GVNLPAR VII+ F + N + +KQM+GRAGR G D G ++
Sbjct: 339 STPTLAAGVNLPARYVIIKD--FGMRLGNEIKPTKNEFKQMAGRAGRPGYDDMGLVFVLT 396
Query: 504 SEAEKKIGFNLMMGDLDPVKSCIETKEKYMRA-ILEIIASNISCSKQELLLYTDCTLLSA 562
+ K++ + + DPV+S I +R +L ++A+ +++ T +S+
Sbjct: 397 TSNWKELAEEYVHSEADPVQSRIWVSGPQLRRFLLGLVAAGFCRQIADVMRVALNTFMSS 456
Query: 563 QKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPN 614
I ++ +L +LK L ++ + E AT +G A S + P+
Sbjct: 457 -VNIRPEDAVL-SSLKMLVDWGFL----EELEGELTATKVGHAVSQSYLTPD 502
>UniRef50_Q86KS9 Cluster: Similar to Mus musculus (Mouse). DNA
polymerase theta short isoform; n=2; Dictyostelium
discoideum|Rep: Similar to Mus musculus (Mouse). DNA
polymerase theta short isoform - Dictyostelium discoideum
(Slime mold)
Length = 516
Score = 176 bits (429), Expect = 3e-42
Identities = 131/395 (33%), Positives = 202/395 (51%), Gaps = 41/395 (10%)
Query: 1128 FNSSKDVAKVLGIYNGRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
+N +K G + ST+ +VL SH+ P+ +++ RKL +T + + K
Sbjct: 104 YNGNKGGGGCGGGVRRQNYSTKGAVLEHISHHHPLPGLIIEIRKLTHHITHYV-DILGKY 162
Query: 1186 CIYSEGDRIMSSYSTF----TCTGRITMHEPNLQNV--PRTF----------------SI 1223
+S+ + YST TGRI+M PNLQN+ P F S
Sbjct: 163 EYHSDRFNMRRIYSTIQQTVVPTGRISMAFPNLQNISHPIEFRVAPSETDLQSQDSIKSF 222
Query: 1224 PLRYLTFDNTTSDEV-----IEFNC-------RNVFRAAPGSVMVSADYCQLEMRLLTHF 1271
TFD T IE C RN F A G V++SADY QLE+R+LTH+
Sbjct: 223 QDEIHTFDYTNDQNFKNLLEIESRCSFTKVSLRNSFTCANGYVLLSADYSQLELRILTHY 282
Query: 1272 SEDSALTRIMK--SDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQ 1329
S+D L + ++DVFK IA S V +V D+ R AK L YGI+YGMG +++
Sbjct: 283 SKDPNLIEMFNYSRELDVFKCIAHQLSGVDYEKVSDEERNFAKHLVYGILYGMGINSIAS 342
Query: 1330 HLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSR 1389
L V + +A + ++ F+ TY + F +S+ + +++TL GR R I T
Sbjct: 343 ELKVDKEKAKVQLERFKNTYRTLIDFLESIEDRVFIDAYIKTLFGRIRNFSAIHDPKTLP 402
Query: 1390 RNTAE--RQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNK 1447
++ + R A N++ QG+AADI K AM +I+ + + ++LQ+HDEL++EV T+
Sbjct: 403 KDIGKIKRGARNSVPQGTAADITKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDI 462
Query: 1448 SRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALD 1482
+ ++K ME+ V+L VPLP+K+ G WG+L+
Sbjct: 463 DQSAKIIKESMENVVKLNVPLPIKMSIGTNWGSLE 497
>UniRef50_O08307 Cluster: DNA polymerase I; n=4; Chloroflexi
(class)|Rep: DNA polymerase I - Chloroflexus aurantiacus
Length = 942
Score = 176 bits (429), Expect = 3e-42
Identities = 135/438 (30%), Positives = 219/438 (50%), Gaps = 39/438 (8%)
Query: 1066 ALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYH 1125
AL++ Y VE+ ++++L++ EL GI +D+E + L L ++ ++ G
Sbjct: 526 ALHDLYYR---VELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP 582
Query: 1126 FNFNSSKDVAKVL----GIY-NGRKTSTRKS--------VLS--SHNTPISSIVMYWRKL 1170
FN NS + + VL GI S KS VL S PI++ ++ +R+L
Sbjct: 583 FNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQL 642
Query: 1171 NAILTKILYPLTEKACIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLT 1229
+ + + L + + RI +SY+ TGR++ + PNLQN+P
Sbjct: 643 TKLKSTYIDALPD--LVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIP----------- 689
Query: 1230 FDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFK 1289
++E E R F A PG V+ADY Q+E+R+L H S D L + +D+
Sbjct: 690 ---VRTEEGREI--RRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHA 744
Query: 1290 SIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTY 1349
+ A+ V VD + R+ AK + +G+IYG+ L+Q L + A +D+ +
Sbjct: 745 ATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQF 804
Query: 1350 PAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADI 1409
P IR + +E ++ G+V+TL GRRR + D+ + +RR AER+A+N IQG+AAD+
Sbjct: 805 PGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRAS-GARRAAAEREAINAPIQGTAADL 863
Query: 1410 AKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTV-ELKVPL 1468
K AM ++ + + RL+LQ+HDELI E E L++ VM +L VPL
Sbjct: 864 MKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDVMSSVYRDLVVPL 923
Query: 1469 PVKLKCGYTWGALDEVAL 1486
V L+ G W + +A+
Sbjct: 924 SVNLEVGPNWDEMSPLAM 941
>UniRef50_Q18YJ9 Cluster: DNA polymerase I; n=2; Desulfitobacterium
hafniense|Rep: DNA polymerase I - Desulfitobacterium
hafniense (strain DCB-2)
Length = 873
Score = 176 bits (428), Expect = 4e-42
Identities = 126/448 (28%), Positives = 220/448 (49%), Gaps = 34/448 (7%)
Query: 1052 KAWAIEMISEKQQNALYESYQNAI--NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRD 1109
+A A+ +++ + L E +A+ +E + IL+ E GI VD + + ++
Sbjct: 446 EASALAQVADSYKETLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTV 505
Query: 1110 SQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSV-------LSSHNT 1158
L+++ + G FN NS + + +L G+ +KT T S L ++
Sbjct: 506 ELQRLEQEIYADAGETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHS 565
Query: 1159 PISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVP 1218
+ ++ Y R+L+ +++ + L + EG + T T TGR++ EPNLQN+P
Sbjct: 566 IVERVLDY-RQLSKLMSTYVNGLLAQI---HEGRVHTTFQQTVTATGRLSSTEPNLQNIP 621
Query: 1219 RTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALT 1278
+ R L T + E G V++SADY Q+E+R+L H+S+D L
Sbjct: 622 IRLELG-RLLRKVFTPTQE--------------GWVLLSADYSQIELRILAHYSQDEVLC 666
Query: 1279 RIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEA 1338
+ DV A+ +P EV D+R+KAK + +G+IYG+ + L + L V EA
Sbjct: 667 ESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEA 726
Query: 1339 SLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAV 1398
+++++ Y ++ + + ++ + K +G V TL R R +P++ +R ER A+
Sbjct: 727 KTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQRQFGERIAM 786
Query: 1399 NTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVM 1458
NT IQG+AADI K AM + + + + + L+LQ+HDEL+ EV + +++ M
Sbjct: 787 NTPIQGTAADIMKLAMLGVAEALKPY--RANLLLQVHDELVIEVAPEDLEEVAKVVREEM 844
Query: 1459 EDTVELKVPLPVKLKCGYTWGALDEVAL 1486
E L VPL K G W ++ +L
Sbjct: 845 ESAFPLSVPLIADCKTGPNWYDMESYSL 872
>UniRef50_Q9RAA9 Cluster: DNA polymerase I; n=2; spotted fever
group|Rep: DNA polymerase I - Rickettsia felis
(Rickettsia azadi)
Length = 922
Score = 176 bits (428), Expect = 4e-42
Identities = 123/434 (28%), Positives = 216/434 (49%), Gaps = 37/434 (8%)
Query: 1059 ISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKA 1118
I E + N + Y N +++ + IL E GI VD +++L + L+++
Sbjct: 508 ILELKDNKAFRLYSN---IDLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEI 564
Query: 1119 FKICGYHFNFNSSKDVAKVL--------GIYNGRKTSTRKSV-----LSSHNTPISSIVM 1165
F + G FN S K + ++L G + + +S LS H I+ +++
Sbjct: 565 FALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLL 624
Query: 1166 YWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIP 1224
WR+L + L ++ I + R+ +++ T T TGR++ EPNLQNVP
Sbjct: 625 RWRQLTKLKNTYTDSLPKQ--IDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP------ 676
Query: 1225 LRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSD 1284
++ +++ R F A G ++SADY Q+E+R+L+H + AL + +
Sbjct: 677 -----IRSSEGNKI-----RQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 726
Query: 1285 VDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDS 1344
D+ A ++ + E+ + R+KAK + +GIIYG+ L++ L+VS EAS ++
Sbjct: 727 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKK 786
Query: 1345 FERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQG 1404
+ Y ++ + + G+V GR+ ++P I H + AER A+N IQG
Sbjct: 787 YFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFVPLI--HDKKLKQFAERAAINAPIQG 844
Query: 1405 SAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVEL 1464
+ ADI K AM +++ I N K RL+LQ+HDEL++EV E ++K +ME++ +
Sbjct: 845 TNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMENSTNM 904
Query: 1465 KVPLPVKLKCGYTW 1478
VP+ +++ G W
Sbjct: 905 DVPIITEIRVGNNW 918
>UniRef50_Q9PEC5 Cluster: DNA polymerase I; n=47; Proteobacteria|Rep:
DNA polymerase I - Xylella fastidiosa
Length = 923
Score = 175 bits (427), Expect = 6e-42
Identities = 126/416 (30%), Positives = 210/416 (50%), Gaps = 32/416 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L E +G+ +D E + + D+ + Q+KA + G HFN +S K +
Sbjct: 522 IEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQV 581
Query: 1137 VLGIYNGRK----TSTRKSVLSSHNTPISSIVMYWRKLNAIL-----TKILYPLTEKA-- 1185
+L ++ K T K S++ + +IV IL K+ TEK
Sbjct: 582 LL--FDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPE 639
Query: 1186 CIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
I+ R+ ++Y TGR++ +PNLQN IP+R T D R
Sbjct: 640 MIHPHTGRVHTNYHQAGAATGRLSSSDPNLQN------IPIR--TDDGR--------RIR 683
Query: 1245 NVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVD 1304
F A G +++ DY Q+E+R++ H S D+ L +S VDV +IAA EV
Sbjct: 684 RAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVT 743
Query: 1305 DDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECK 1364
+ R+ AK + +G+IYGM L++ L +S EA ++ + + +R F ++ ++ +
Sbjct: 744 LNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRFAGVRDFMENTRQQAR 803
Query: 1365 RQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIED--GIN 1422
+G+VET+ GRR YL I S ++R AER A+N +QG+AADI K AM +++ G+
Sbjct: 804 DRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVG 863
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ +ILQ+HDEL++E E + + + M +L+VPL V + G+ W
Sbjct: 864 GHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAAAQLRVPLVVDVGVGHHW 919
>UniRef50_Q8IE16 Cluster: Helicase, putative; n=1; Plasmodium
falciparum 3D7|Rep: Helicase, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1157
Score = 174 bits (423), Expect = 2e-41
Identities = 127/454 (27%), Positives = 223/454 (49%), Gaps = 19/454 (4%)
Query: 46 ENKQKHVNRRFVNTASN---NSLLNK-TAEGKLTASKEVRNTQKIQSKKLKDWGLPIEIS 101
+NK K + N +N N N+ T E S E N + + K L +
Sbjct: 232 DNKMKVYTNEYTNEYTNEYTNEYTNEYTNEYTNECSNEDTNEYNLNNSHSKYDTLVNVEN 291
Query: 102 KKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKV 161
Y++R +++ W N ++ N ++ PT GKTL+ +IL I+ VL + +V
Sbjct: 292 SSYKKR--SQICYWSNNNNNNNNKFYN--NFLFKIPTGMGKTLIYDILIIRQVLYKGFRV 347
Query: 162 IIILPFVSIVREKMFYLQNILSSS--GIRVEGFMGSQSPAGGMQ-NVHVAICTIEKANSM 218
I+ LP +S++ EK Y + + ++ F + + +A+CT E+AN++
Sbjct: 348 ILTLPTLSLINEKYEYYDKLFGDQTVSLNIKKFNSNDFTGYSYSLSTDLALCTFEQANTI 407
Query: 219 INRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL--IQVIGMSA 276
++ ++ N N++ ++DE+H + +Q RG+ +E LLTKIKY+ + I+V G SA
Sbjct: 408 LSIIIKN-NLKFNYLFILDEIHYINNQKRGFHIESLLTKIKYIQKNFSHIYNIKVYGFSA 466
Query: 277 TLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSV 336
T+ N++ LA WL+A ++ + + ++ ++N Y K +E N + +
Sbjct: 467 TISNIDQLAEWLDANVYESKTKLQRIKYLYKIDNSLYKDINKNEVERTLENCNTLDPNHL 526
Query: 337 LKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILE 396
+ E +VLIFC +KN+ E A +SST ++ + + Q E +
Sbjct: 527 GYLISEEFILKKNVLIFCPSKNKSEQTASFISSTL-PYYLNKRDYKINMELQ---EKRFK 582
Query: 397 ALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSG 456
L LK + + + +K I G+ YHH+GL ++E+ +IE +F++ + L T+TLS G
Sbjct: 583 LLNDLKGLTIKVANV-EKMIMNGIFYHHSGLNINEKSLIENSFRNNILFCLCCTTTLSVG 641
Query: 457 VNLPARKVIIRSPVFQKQPINILSYKQMSGRAGR 490
+N+ +IIRS K I QM+GR GR
Sbjct: 642 INMNIHTIIIRSLKLGKSFITKDEITQMAGRCGR 675
>UniRef50_A5K7V8 Cluster: Helicase, putative; n=1; Plasmodium
vivax|Rep: Helicase, putative - Plasmodium vivax
Length = 972
Score = 173 bits (422), Expect = 2e-41
Identities = 137/498 (27%), Positives = 246/498 (49%), Gaps = 36/498 (7%)
Query: 123 TKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNIL 182
T+ F N +++ PT GKT++ +I I+ VL + + I+ LP VS++ EK Y + +L
Sbjct: 253 TRNNFFYKNFLFNIPTGMGKTIIYDIQIIRLVLYKGYRAILTLPTVSLINEKNDYYEKLL 312
Query: 183 SSS--GIRVEGFMGSQSPAGGMQ-NVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
+ + ++ F S + +A+CT E+AN ++N ++ N N++ ++DE+
Sbjct: 313 GENTVSLNIKKFNSSNFTGYSYSLSTDIALCTYEQANIILNIIIKN-NLKCNYIFIIDEI 371
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLL--IQVIGMSATLPNLETLATWLNAELFITTF 297
H + D RG+ +E LLTKIKY+ + + I+ G SATL N++ + WL+A++ ++
Sbjct: 372 HYINDTQRGFFIESLLTKIKYIQRNCESVFNIRAYGFSATLSNVDQIGEWLDAKVHVSKE 431
Query: 298 RPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTK 357
+ ++ +EN Y K LE D ++ + E + +VLIFC TK
Sbjct: 432 KLQKIKYLYKIENAIYKDIHKKELERTLGAPFYLDPDHLVYLLSEELILQRNVLIFCPTK 491
Query: 358 NRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTIS 417
+ E +A +S+ + + + R + E ++ + +LK V + + K I
Sbjct: 492 KKSEQVASFISNIL-PYYLKNRNY-KVKREVV--ERRVKLVGELKELSVKIPDV-DKLIL 546
Query: 418 FGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN 477
G+ YHH+ L E++I+EGAF+S + L T+TLS GVN VIIRS +
Sbjct: 547 SGIFYHHSELEKSEKEIVEGAFRSNTLFCLCCTTTLSVGVNFNVHTVIIRSIRLGNAFLT 606
Query: 478 ILSYKQMSGRAGRMGR---------------DTKGESILICSEAEKKIGFNLMMGDLDPV 522
Q++GR GR+ + D G+ ++ + +K ++ D+D
Sbjct: 607 KDQIVQIAGRCGRVKKARGVSAEAAVHDYDLDCDGKVVIFLTACDKAYMEKILKDDVDAC 666
Query: 523 KSCIETK---EKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKE 579
K ++TK + + ILE I N+ +K+E++ D L KE++ Q ++ T +
Sbjct: 667 K--LKTKLHNFQLCKFILEFIELNLIKTKKEMV---DFLFLYTLKELIMQE--VKQTFQY 719
Query: 580 LENYELIRIQNNHSENHY 597
L +LI I + + +Y
Sbjct: 720 LFENKLIIIPHEKEQCYY 737
>UniRef50_Q8G5M4 Cluster: DNA polymerase I; n=5; Bifidobacterium|Rep:
DNA polymerase I - Bifidobacterium longum
Length = 955
Score = 173 bits (420), Expect = 4e-41
Identities = 132/475 (27%), Positives = 218/475 (45%), Gaps = 47/475 (9%)
Query: 1024 MDLAQLTIKVNNRQTKLKNLTLAQESCVKAWAIEMISEKQQNALYESYQNAINVEIKVLK 1083
+D ++ + + +L++L + + V I I E++Q L + +E+ V +
Sbjct: 503 LDFDDDQVEEDPNELRLRDLAIIRSLAVTLGPI--IDEREQCWLMRA------IELPVSR 554
Query: 1084 ILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNG 1143
+L E G VD + + Q+ A++ G N S K + KVL G
Sbjct: 555 VLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMG 614
Query: 1144 RKTSTR------------------KSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKA 1185
K + R KSV + ++ R++N L +I+ L +
Sbjct: 615 LKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINK-LKQIVQTLIDAT 673
Query: 1186 CIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCR 1244
+ +RI +++ T TGR++ +PNLQN+P N E+ R
Sbjct: 674 --NTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNR-----------NAAGREI-----R 715
Query: 1245 NVFRAAPG-SVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
VF G ++S DY Q+E+R++ S+D AL +S D K +A+ +P ++
Sbjct: 716 GVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQI 775
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D R K + YG+ YG+ L+Q L ++ EA + + T+ + + +S++
Sbjct: 776 TGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANA 835
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
+ +G+ ET+ GRRRY P + S R AER A+N IQGSAADI K AM E +
Sbjct: 836 REKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAE 895
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ K R+ILQ+HDEL+ E+ + L+++ ME V+L VPL V G W
Sbjct: 896 AHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLAVPLDVSCGIGSDW 950
>UniRef50_A4M7N2 Cluster: DNA polymerase I; n=1; Petrotoga mobilis
SJ95|Rep: DNA polymerase I - Petrotoga mobilis SJ95
Length = 896
Score = 172 bits (419), Expect = 5e-41
Identities = 126/475 (26%), Positives = 238/475 (50%), Gaps = 40/475 (8%)
Query: 1016 VDMKKYSGMDLAQLTIKVNNRQTKLKNLTLAQESCVKAWAIEMISEKQQNALYESYQNAI 1075
+ K+ G D+ LT+ +++ ++ +++ + E++ K + +E ++
Sbjct: 448 IKYKEVMGKDIKLLTLGDIDKKRVVEYA--GEDADIAYRLFEVLKPKLEE--FELFELFE 503
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
+E+ + +LS E++G+ D + + +L + L + KI GY FN NS K V
Sbjct: 504 KIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKIVGYDFNPNSPKQVG 563
Query: 1136 KVL----GIYNGRKT-----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
++L G+ RKT ST L + PI ++ +RK +L+ + + +
Sbjct: 564 ELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKYQKLLSTYIIAIPK- 622
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ + R+ +S++ T T TGR++ EPNLQN+P R + D+
Sbjct: 623 -LVNKKTGRVHTSFNQTGTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDY----- 676
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
V++SADY Q+E+R+L H + D L + D+ AA+ V +V
Sbjct: 677 ----------VLLSADYSQIELRVLAHLTNDETLINAFNNGEDIHALTAAAIFGVKIDDV 726
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D ++R+ K + + ++YG L+++L + +A FM+ + +TY ++ + +S ++
Sbjct: 727 DYNMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKEYQESSLKIA 786
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
++G+VET+ GR+R+L +I + ++ +R +NT IQGSAADI K AM ++
Sbjct: 787 TQKGYVETIFGRKRFL----KNIKTGKSELKRIVINTPIQGSAADIMKLAMINL---YKK 839
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ +LILQ+HDE++ E+ E +++ ME+ V+L +PL V + G W
Sbjct: 840 LPKEAKLILQVHDEVVIELPEKIVEETKKMVQDCMENAVKLNIPLKVDISVGKNW 894
>UniRef50_P56105 Cluster: DNA polymerase I; n=5; Helicobacter|Rep: DNA
polymerase I - Helicobacter pylori (Campylobacter pylori)
Length = 891
Score = 171 bits (417), Expect = 9e-41
Identities = 129/461 (27%), Positives = 228/461 (49%), Gaps = 38/461 (8%)
Query: 1032 KVNNRQTKLKNLTLAQESCVKAWAIEMISEK-QQNALYESYQN-AINVEIKVLKILSNCE 1089
K+ + +TK + L L V+ A++ + E ++ L E+ + A +E +K+L E
Sbjct: 456 KIKDFKTKAEKLELLS---VELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGME 512
Query: 1090 LHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRK 1145
G +D RL + ++ VL+++ ++ G FN NS K +++VL G+ +
Sbjct: 513 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKNKS 572
Query: 1146 TST-RKSVLSSHNT-PISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFT 1202
ST KS+L + P ++++ +R+LN + PL + + D+I +++ T T
Sbjct: 573 HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLR---LKDKDDKIHTTFIQTGT 629
Query: 1203 CTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQ 1262
TGR++ H PNLQN+P S + + + ++ ++ DY Q
Sbjct: 630 ATGRLSSHSPNLQNIP--------------VRSPKGLLIR-KGFIASSKEYCLLGVDYSQ 674
Query: 1263 LEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE-VDDDLRQKAKQLCYGIIYG 1321
+E+RLL HFS+D L D+ + + GE + + R AK + +G++YG
Sbjct: 675 IELRLLAHFSQDKDLMEAFLKGRDIHLETSKALF----GEYLAKEKRSIAKSINFGLVYG 730
Query: 1322 MGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPD 1381
MG+K LS+ L++S EA +++++ + +P+I+ + + EE + TL GR R D
Sbjct: 731 MGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF-D 789
Query: 1382 ITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYE 1441
T + R+ VN + QGSA+D+ K M + + + NP RL+LQ+HDELI+E
Sbjct: 790 FTGANDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKN-NPSVRLLLQVHDELIFE 848
Query: 1442 VHETNKSRFISLMKSVMEDTV-ELKVPLPVKLKCGYTWGAL 1481
+ E N ++ ++ D V L+VPL W L
Sbjct: 849 IEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRWNEL 889
>UniRef50_Q6F0N3 Cluster: DNA polymerase I; n=3; Mollicutes|Rep: DNA
polymerase I - Mesoplasma florum (Acholeplasma florum)
Length = 895
Score = 171 bits (416), Expect = 1e-40
Identities = 124/416 (29%), Positives = 209/416 (50%), Gaps = 35/416 (8%)
Query: 1056 IEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDK-EL---VSRLLTDVRDSQ 1111
I ++ E Q LYE +E+ ++++L N E GI++DK EL +R L + + +
Sbjct: 470 INLLKENNQFNLYEK------IELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELE 523
Query: 1112 DVLQKKAFKICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSVLSS--HNTPISSIVM 1165
+ ++ +FNF S K + ++L G+ + +K ST K L H P+ ++++
Sbjct: 524 EKMKVILKDQISENFNFGSPKQIKELLFDQIGLPSNKKQSTDKEALEKIIHLHPVINLLL 583
Query: 1166 YWRKLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPL 1225
RKLN + + L EK I+ + T T TGR++ EPN+QN+
Sbjct: 584 EHRKLNKLYSTYLRGF-EKF-IFDDNKVHTIFNQTLTNTGRLSSSEPNIQNI-------- 633
Query: 1226 RYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDV 1285
+ DE ++ R +F + + S DY Q+E+R+L ++ L I K+D
Sbjct: 634 -------SVKDE-LQREARKIFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDR 685
Query: 1286 DVFKSIAASWSDVPEGE-VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDS 1344
DV A + E E + D R+ AK +GIIYG+ + LS L +S EA F+D
Sbjct: 686 DVHAEAARKIFKLEENEEITSDQRRIAKVFNFGIIYGLSDFGLSNDLKISIPEAKRFIDD 745
Query: 1345 FERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQG 1404
+ ++P + + S+I + G+ ET + RRR + ++ S +N R AVN IQG
Sbjct: 746 YYLSFPKLMTYKNSLINQATVNGYAETYANRRRIVNELASSNFMVKNFGNRIAVNMPIQG 805
Query: 1405 SAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMED 1460
+AADI K AM +I N K + Q+HDE+I+E+ E+ +S + +++ M++
Sbjct: 806 TAADILKVAMNNIHKEFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQN 861
>UniRef50_Q9HMV6 Cluster: Putative ski2-type helicase; n=1;
Halobacterium salinarum|Rep: Putative ski2-type helicase
- Halobacterium salinarium (Halobacterium halobium)
Length = 783
Score = 171 bits (415), Expect = 2e-40
Identities = 130/489 (26%), Positives = 236/489 (48%), Gaps = 44/489 (8%)
Query: 95 GLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV 154
GLP ++ +E G+ E++ Q + + + + ANLV S PT++GKTL+A++ + +
Sbjct: 8 GLPGGVADHFEGEGVEELYPPQAEAV--ERGVTEGANLVASVPTASGKTLIAQLAMLSAI 65
Query: 155 LERQKK--------VIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNV 205
E + I+P ++ EK + G+ V G+ G + +
Sbjct: 66 AEGGDSPTFSGDGTALYIVPLRALAGEKAQEFE-AFERFGLSVGVSTGNYERDGARLADN 124
Query: 206 HVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKS 265
+ + T EK +S++ G I+DL VV DE+HL+ D +RG LE+ L K++ +
Sbjct: 125 DIVVATSEKVDSLVRN--GAGWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVAD- 181
Query: 266 DLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKS 325
+QV+ +SAT+ N LA WL+AEL + +RPI L +Y ++ Y +
Sbjct: 182 ---LQVVALSATVGNAGELAAWLDAELVDSDWRPIELRT-----GVHYGQSLHYD-DGTQ 232
Query: 326 SNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMIL 385
+ V + +T+ + S L+F ++ E+ A+ L+ G L
Sbjct: 233 AELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVT----------GNAL 282
Query: 386 RSQLNSEHILEALEQLKN-SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAI 444
S E + + +++ S L ++ G +HHAGL + R+++E AF+ +
Sbjct: 283 -SSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLV 341
Query: 445 RVLVATSTLSSGVNLPARKVIIR------SPVFQKQPINILSYKQMSGRAGRMGRDTKGE 498
+ + AT TL++GVN PAR+V++R QP+++L QM GRAGR G D GE
Sbjct: 342 KAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGE 401
Query: 499 SILICSEAE--KKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTD 556
++L+ + + +++ + D +PV+S + + +L IA+ + ++ L +
Sbjct: 402 AVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLG 461
Query: 557 CTLLSAQKE 565
TL + Q +
Sbjct: 462 GTLYATQTD 470
>UniRef50_UPI00006605F7 Cluster: DNA polymerase nu (EC 2.7.7.7).; n=1;
Takifugu rubripes|Rep: DNA polymerase nu (EC 2.7.7.7). -
Takifugu rubripes
Length = 476
Score = 169 bits (410), Expect = 7e-40
Identities = 83/188 (44%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
Query: 1258 ADYCQLEMRLLTHFSEDSALTRIMKS-DVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCY 1316
+D+CQ+E+RLL HFS D L RI DVF +A+ W + EV + R+ AK++ Y
Sbjct: 230 SDFCQVELRLLAHFSSDPELLRIFSHPQSDVFTMLASQWKGLSHTEVTSEDREHAKRIVY 289
Query: 1317 GIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRR 1376
++YG G + LS L VS +AS F DSF + Y ++ F + I++C++QG+V +L GRR
Sbjct: 290 SVVYGAGRERLSGILGVSAEQASQFQDSFLQAYKDVQAFVQKTIQQCRQQGYVLSLMGRR 349
Query: 1377 RYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHD 1436
R LP+I + R AERQAVN ++QGSAAD+ K+AM I + ++S + RL+ Q+HD
Sbjct: 350 RTLPNINVSDWAVRMQAERQAVNFVVQGSAADLCKTAMIRIFNLVSSSSRSARLVAQLHD 409
Query: 1437 ELIYEVHE 1444
EL+YEV +
Sbjct: 410 ELLYEVED 417
>UniRef50_Q18JP5 Cluster: ATP-dependent DNA helicase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: ATP-dependent DNA
helicase - Haloquadratum walsbyi (strain DSM 16790)
Length = 696
Score = 169 bits (410), Expect = 7e-40
Identities = 153/564 (27%), Positives = 256/564 (45%), Gaps = 61/564 (10%)
Query: 96 LPIE--ISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKT 153
LP+ + + Y + GIT+++ Q A + V D N++ + PT+AGKTL+A++
Sbjct: 29 LPVSAAVREHYYDAGITQLYPPQEAAVKAGVV--DGENVIVAIPTAAGKTLIAQL----A 82
Query: 154 VLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPA-GGMQNVHVAICTI 212
+L + I+P ++ REK + + GI G A ++ V + T
Sbjct: 83 MLTADGPALYIVPLRALAREKY---ETFTALPGIDAAISTGDFDAAENDLETADVVVATA 139
Query: 213 EKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVI 272
EK +S I ++ L VVVDE+HLLG NRG LE+ L I+ S +QV+
Sbjct: 140 EKVDSAIRN--GASWVDKLACVVVDEVHLLGSANRGPTLEITLATIQRRASG----VQVV 193
Query: 273 GMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSC 332
+SAT+ N E +A+WL+AEL +T+RP+ L YD + + ++ + ++
Sbjct: 194 ALSATIDNPEEVASWLDAELVSSTWRPVSL------RTGVYDASDETVIFDDGNRLPITA 247
Query: 333 NDSVLKICLETIKEGCSVLIFCMTKNRCESLAQ-LLSSTFCKIGCEGSEFGMILRSQL-- 389
+ + E TK +A ++S C + L QL
Sbjct: 248 DSDSPPETATDLTESDDTSTDADTKATISLVADAVISGGQCLAFVRSRQEAASLAKQLAD 307
Query: 390 ----NSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIR 445
+ + E + + +P G + L ++ GV +HHAGL D R +IE AF++ +R
Sbjct: 308 VGFGANPELAEDIRDIGTTPTG--KQLADAVTAGVAFHHAGLRSDHRILIESAFRNRDLR 365
Query: 446 VLVATSTLSSGVNLPARKVIIRS---PVFQKQP-INILSYKQMSGRAGRMGRDTKGESIL 501
V+ AT TL++GVN+PAR+V++R +K + +L QM GRAGR D GE++L
Sbjct: 366 VICATPTLAAGVNVPARRVVVRDLKRYTGEKMAWLPVLEVHQMCGRAGRPHLDPYGEAVL 425
Query: 502 ICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR---------------------AILEII 540
I + KI + D + I T+ ++ R +L +I
Sbjct: 426 I-GDITNKIDSSDAQTSADGEQKSIRTESRWRRYVDAGPESIESQLTARNALRTHVLALI 484
Query: 541 ASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVAT 600
+ + SK ++L D T + Q +++D + EL L+ + ++ AT
Sbjct: 485 VAGFADSKNQVLDVLDSTFFAHQSSTADLTAVIDDVVAELIEMGLLTTETTNTA--LAAT 542
Query: 601 ALGKACLSSSMAPNDGLTLFCELQ 624
A+GK + P G L +Q
Sbjct: 543 AVGKTVSQQYIQPTTGAELVDGIQ 566
>UniRef50_Q92GB7 Cluster: DNA polymerase I; n=11; Rickettsia|Rep: DNA
polymerase I - Rickettsia conorii
Length = 875
Score = 168 bits (408), Expect = 1e-39
Identities = 118/436 (27%), Positives = 212/436 (48%), Gaps = 37/436 (8%)
Query: 1057 EMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQK 1116
+ I E + N + Y N +++ + IL E GI VD + +L + L++
Sbjct: 459 QTIWELKDNKTFRLYSN---IDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEE 515
Query: 1117 KAFKICGYHFNFNSSKDVAKVL--------GIYNGRKTSTRKSV-----LSSHNTPISSI 1163
+ F + G FN S K + ++L G + + +S LS H I+ +
Sbjct: 516 EIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADL 575
Query: 1164 VMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFS 1222
++ WR+L + L ++ I + R+ +++ T T TGR++ EPNLQNVP
Sbjct: 576 LLRWRQLTKLKNTYTDSLPKQ--IDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP---- 629
Query: 1223 IPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMK 1282
++ +++ R F A G ++SADY Q+E+R+L+H + AL +
Sbjct: 630 -------IRSSEGNQI-----RKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFI 677
Query: 1283 SDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFM 1342
+ D+ A ++ + E+ + R+KAK + +GIIYG+ L++ L+V+ EAS ++
Sbjct: 678 NKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYI 737
Query: 1343 DSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMI 1402
+ Y ++ + + G+V GR+ ++P I H + AER A+N I
Sbjct: 738 KKYFAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLI--HDKKLKQFAERAAINAPI 795
Query: 1403 QGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTV 1462
QG+ DI K AM +++ I K RL+LQ+HDEL++E ++K +ME++
Sbjct: 796 QGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST 855
Query: 1463 ELKVPLPVKLKCGYTW 1478
+ VP+ +++ G W
Sbjct: 856 NMAVPIITEIRAGNNW 871
>UniRef50_Q2GD93 Cluster: DNA polymerase I; n=1; Neorickettsia
sennetsu str. Miyayama|Rep: DNA polymerase I -
Neorickettsia sennetsu (strain Miyayama)
Length = 829
Score = 167 bits (406), Expect = 2e-39
Identities = 134/448 (29%), Positives = 220/448 (49%), Gaps = 50/448 (11%)
Query: 1062 KQQNALYESYQNAINVE------IKVLKILSNC----ELHGIVVDKELVSRLLTDVRDSQ 1111
K+ N LYE NA+ E KV K L N E +GI +D E + L T +
Sbjct: 396 KRLNELYEKLCNAMFTEKVLTLYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGKL 455
Query: 1112 DVLQKKAFKICGYHFNFNSSKDVAKVL------GIYNGRKT---STRKSVLSS---HNTP 1159
+ ++ K F I G F+ S K + KVL + K+ ST VL+S
Sbjct: 456 EEIESKIFDIAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYE 515
Query: 1160 ISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVP 1218
I+ ++ WR + T + PL K E RI ++YS T T TGR++ PNLQN+P
Sbjct: 516 IADYLLSWRHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIP 575
Query: 1219 RTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALT 1278
R E R +F A G + ADY Q+E+R+L + + L
Sbjct: 576 R--------------------EKEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLK 615
Query: 1279 RIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEA 1338
+ S D+ ++ AS ++ DLR KAK + +GI+YG+ N LS+ L +S+ EA
Sbjct: 616 CALASGTDLH-TLTAS-QIFKTDKITPDLRNKAKAVNFGIVYGITNFGLSKQLAISKEEA 673
Query: 1339 SLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAV 1398
+ ++ + YP I+++ + + ++ +V+T+ R+ + +I S+ + AER A+
Sbjct: 674 ASYIQKYFDEYPEIKIYMNHIRNQARKDTYVKTMMNRKCPIQNINSNNRTISLVAERSAI 733
Query: 1399 NTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVM 1458
N IQG+AADI ++AM + + +++Q+HDEL++E+ + +K +M
Sbjct: 734 NAPIQGTAADIIRTAMVRMAQEKELLS---HMVMQVHDELVFELETDVIQQLAKKIKRIM 790
Query: 1459 EDTVELKVPLPVKLKCGYTWGALDEVAL 1486
E++ +PL V+LK G G L+++ L
Sbjct: 791 EES--HGIPLLVELKHGPNLGELEDLKL 816
>UniRef50_Q7VPX4 Cluster: DNA-directed DNA polymerase I; n=8;
Chlamydiaceae|Rep: DNA-directed DNA polymerase I -
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 870
Score = 167 bits (406), Expect = 2e-39
Identities = 127/412 (30%), Positives = 203/412 (49%), Gaps = 28/412 (6%)
Query: 1076 NVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVA 1135
++E+ + K+L + E G+ +D E ++ L VL ++ + + G FN S K ++
Sbjct: 475 DIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGGPFNIKSPKQLS 534
Query: 1136 KVLGIYNG-----RKTSTRKSVLSSHNT--PISSIVMYWRKLNAILTKILYPLTEKACIY 1188
+L G + STR VL + + PI ++ +R + +L+ + L ++ +
Sbjct: 535 DILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQ--VD 592
Query: 1189 SEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVF 1247
S RI S+ T TGR+ +PNLQN IP+R S+ I R F
Sbjct: 593 SHTQRIHPSFDQTGAVTGRLACRDPNLQN------IPIR--------SERGILL--RKAF 636
Query: 1248 RAAP-GSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDD 1306
R + S +SADY Q+E+R L H S+D +L +S D+ A+ VP +V +
Sbjct: 637 RLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKE 696
Query: 1307 LRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQ 1366
R +AK + +GI+YG L++ L +S EA + ++ YP I F + I++ +
Sbjct: 697 QRMQAKTVNFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKD 756
Query: 1367 GFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNP 1426
V T+ GR R + D + R + R AVNT IQGSAA++ K AM I I
Sbjct: 757 LRVTTMLGRERII-DSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQM 815
Query: 1427 KPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
K R++LQ+HDEL++EV E L++ ME + L VP+ V + G W
Sbjct: 816 KSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMTLSVPIVVNILIGKNW 867
>UniRef50_A5UYS0 Cluster: DNA polymerase I; n=2; Roseiflexus|Rep: DNA
polymerase I - Roseiflexus sp. RS-1
Length = 965
Score = 167 bits (406), Expect = 2e-39
Identities = 125/427 (29%), Positives = 217/427 (50%), Gaps = 41/427 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ ++ +L E GI++D + L + + ++++ + I G FN NS +++
Sbjct: 554 LEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTFNINSGDQLSE 613
Query: 1137 VL----------GI---YNGRKTSTRKSV---LSSHNTPISSIVMYWRKLNAILTKILYP 1180
VL G+ GR + T +++ +S T I +++ R+L+ + K Y
Sbjct: 614 VLFGPKINLPTTGLDRTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKL--KSTYV 671
Query: 1181 LTEKACIYSEGDRIMSSYSTF-TCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVI 1239
A + E R+ + Y+ TGR++ + PNLQN+P T ++E
Sbjct: 672 DELPALVNPETGRVHTDYNQLGAATGRLSSNSPNLQNIP--------------TRTEEGR 717
Query: 1240 EFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVP 1299
E R F AAPG ++++ADY Q+E+R+L H + D L + D+ + AA V
Sbjct: 718 EV--RRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQTFIEGRDIHAATAARLFGVG 775
Query: 1300 EGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSV 1359
VD + R+ AK + +G+IYG+ L+Q L +S +A +DS +P IR +
Sbjct: 776 FSAVDKNQRRIAKTVVFGVIYGISPFGLAQRLGISREQARGLIDSLFDQFPRIRDYIDRT 835
Query: 1360 IEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIED 1419
++ + +G+V++L GRRR + D+ RR AER+A+N IQ +AADI K AM +++
Sbjct: 836 LDIGRSEGYVQSLFGRRRPMFDLRVS-GPRRQAAEREAINHPIQSTAADIMKLAMIAVDA 894
Query: 1420 GINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE-----LKVPLPVKLKC 1474
+ + R++LQ+HDELI+E E ++L++ ME + VPL V+++
Sbjct: 895 ELQRRQMRTRMLLQVHDELIFEAPEAEVDDVVALVRERMEGVLHGMEPPFAVPLRVEIET 954
Query: 1475 GYTWGAL 1481
G W L
Sbjct: 955 GPNWEEL 961
>UniRef50_A7PDB5 Cluster: Chromosome chr17 scaffold_12, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_12, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 2066
Score = 167 bits (406), Expect = 2e-39
Identities = 142/480 (29%), Positives = 235/480 (48%), Gaps = 44/480 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQKKVIIILPFVSIVREKMF-YLQNILSSSGIR 188
N++ APT +GKT+ AE+ + + KVI I P +IVRE+M + + I+S G
Sbjct: 1279 NVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMIDWKKRIVSQLGKE 1338
Query: 189 VEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G +P + + + I T EK + + + G ++ +G +++DE+HLLG +R
Sbjct: 1339 MVEMTGDYTPDLMALMSADIIISTPEKWDGISRNWHNRGYVKKVGLMILDEIHLLG-ADR 1397
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLN-AELFITTF----RPIPL 302
G ILE+++++++Y++S+++ ++ +G+S L N LA WL E+ + F RP+PL
Sbjct: 1398 GPILEVIVSRMRYISSQTERTVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPL 1457
Query: 303 EEYCL-VENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
E + K+Y + Y C S +K VLIF ++ R
Sbjct: 1458 EVHIQGYPGKFYCPR---MNSMNKPAYAAICTHSPMK----------PVLIF-VSSRRQT 1503
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVG 421
L L F +F + E + L Q+ DQ L+ T+ FG+G
Sbjct: 1504 RLTALDLIQFAASDEHPRQF-----LSMPEEALQMVLSQV------TDQNLRHTLQFGIG 1552
Query: 422 YHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF----QKQPIN 477
HHAGL +R ++E F + I+VLV TSTL+ GVNLPA VII+ F K+ ++
Sbjct: 1553 LHHAGLNDKDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEFYDGKAKRYVD 1612
Query: 478 --ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRA 535
I QM GRAGR D G+++++ E +K + + + PV+S + +E +
Sbjct: 1613 FPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YKKFLYEPFPVESSL--REHFHDH 1669
Query: 536 ILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSEN 595
I I S C K++ + Y T L + + L+DT E+ + L R+ N E+
Sbjct: 1670 INAEIVSGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLDDTDPEILSSYLSRLVQNTFED 1729
Score = 113 bits (271), Expect = 5e-23
Identities = 106/419 (25%), Positives = 195/419 (46%), Gaps = 43/419 (10%)
Query: 125 VLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK---------KVIIILPFVSIVREKM 175
V + N++ APT AGKT +A I + + + K K++ + P ++ E
Sbjct: 452 VYYTNENVLVCAPTGAGKTNIAMIAILHEIGQHFKDGYLHKNEFKIVYVAPMKALAAEVT 511
Query: 176 FYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAV 234
+ LS I V G Q ++ + + T EK + + + D + +
Sbjct: 512 STFSHRLSPLNISVRELTGDMQLSKYELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLL 571
Query: 235 VVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWL--NAE- 291
++DE+HLL D +RG ++E L+ + + +I+++G+SATLPN +A +L N E
Sbjct: 572 IIDEVHLLND-DRGAVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPEA 630
Query: 292 ---LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGC 348
F +++RP+PL + +Y + + L A++ C + V ++++++G
Sbjct: 631 GLFYFDSSYRPVPLAQ------QYIGISEQNFL-ARTELLNEICYNKV----VDSLRQGH 679
Query: 349 SVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGL 408
++F ++ A+ L ++ + +++ + + L +E +K+
Sbjct: 680 QAMVFVHSRKDTAKTAEKLIEL-----ARRNDDVELFKNETHPQFSL--MEVMKSR---- 728
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
++ L + GVG HHAG+ +R + E F G ++VLV T+TL+ GVNLPA V+I+
Sbjct: 729 NKDLVEYFGSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKG 788
Query: 469 PVFQKQPI---NILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS 524
L + GRAGR D GE I+I S + L+ L P++S
Sbjct: 789 TQLYDPKAGGWRDLGMLDIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQL-PIES 846
>UniRef50_A4RWY1 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 671
Score = 166 bits (403), Expect = 5e-39
Identities = 137/444 (30%), Positives = 212/444 (47%), Gaps = 57/444 (12%)
Query: 1074 AINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKD 1133
A +VE KV L + HG+ D+ + L+++A K G N S++
Sbjct: 237 ARDVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDINLASAQQ 296
Query: 1134 VAKVLGIYNGRKTST---------RKSVLSSHNTPISSIVMYWRKLNAILTK-------- 1176
VA VL YN K T + S LS+ + S+V + +L
Sbjct: 297 VADVL--YNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERA 354
Query: 1177 ILYPLTEKACIYSEGD-RIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTT 1234
+ + A I ++G RI + ++ T T TGR++ PN+Q V R
Sbjct: 355 MCDNYDKSAVIAADGRARIHTQWNNTKTATGRLSSSHPNIQQVGRG-------------- 400
Query: 1235 SDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMK-SDVDVFKSIAA 1293
RN F A G ++ADY Q+E+R+L H S D L +++ + DVF +I
Sbjct: 401 -------TMRNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDVFVAIWN 453
Query: 1294 SWSDVP-EGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAI 1352
+ +P + + R AK+ YGI+YG L++ L V + EA ++ +F R +P +
Sbjct: 454 AGKGLPLDAPAEKSTRDIAKRTAYGIVYGQHATGLAEKLGVPKSEAQGYIAAFHRAFPKV 513
Query: 1353 RVFTKSVIEECKRQGFVET-LSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAK 1411
+ V++ ++ G V +SGR R LP I S + S R+ A+RQAVNT+IQG+AAD+ K
Sbjct: 514 NQWITRVLQRAEQTGAVTLPMSGRHRALPKIHSKVFSERSEAQRQAVNTIIQGTAADMMK 573
Query: 1412 SAMCSIEDGI-----------NSFNPK-PRLILQMHDELIYEVHETNKSRFISLMKSVME 1459
+AM + S N K L+ Q+HDEL++EV E +K+VME
Sbjct: 574 TAMLRWTSAVGAGRFANDVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPECARAVKNVME 633
Query: 1460 DTVELKVPLPVKLKCGYTWGALDE 1483
+ ++L VP P+KL G +WG L E
Sbjct: 634 NAIKLAVPTPIKLAVGTSWGELRE 657
>UniRef50_Q2HFN4 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 983
Score = 163 bits (397), Expect = 2e-38
Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 69/380 (18%)
Query: 94 WGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKT 153
+G P ++ + GI ++ WQ CL +L NLVYSAPT GK+LVA++L +K
Sbjct: 133 YGFPPQLVTNFAALGIKTIYPWQKQCLRGPGLLNGDRNLVYSAPTGGGKSLVADVLMLKR 192
Query: 154 VLE-RQKKVIIILPFVSIVREKMFYLQNILSSSG------------------------IR 188
VLE R K I++LP+V++V+EK+ +L+NI+S IR
Sbjct: 193 VLEDRDAKAILVLPYVALVQEKVRWLRNIVSGISRAELEQNEPDEKPGFWAPRADKDTIR 252
Query: 189 VEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
V GF G + +A+CT+EKA +++ +I L AVV+DE H++ D RG
Sbjct: 253 VVGFFGGNKIRATWADFDIAVCTMEKAT------IEDCSISALRAVVLDECHMIDDGYRG 306
Query: 249 YILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLV 308
Y+LEL+ TK+ + +Q+IGMSATL N+E L WL + T +RP+P+EE+ +
Sbjct: 307 YLLELMGTKLLCLGQP----VQIIGMSATLTNIELLKNWLQGHSYETHYRPVPIEEHLVY 362
Query: 309 ENKYYDKNG-----KYI--LEAKS--SNYGVS----------------CNDSVLKICLET 343
+ K Y K + LE+KS S G+ ++V+ + ET
Sbjct: 363 DGKVYAATTTASLLKTVTQLESKSQFSQPGLQPLRIIQASDTKEFKDPVRNAVVALANET 422
Query: 344 IKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKN 403
+ G VL+F ++ CES A L+S + E ++ + E L+ L L+N
Sbjct: 423 ARAGYGVLVFSNSRAGCESDAVLISRVLPTL--EEADPAI-------QEKRLDLLSDLRN 473
Query: 404 SPVGLDQILQKTISFGVGYH 423
GLD L++TI FGV +H
Sbjct: 474 LSTGLDPKLEQTIPFGVAFH 493
Score = 121 bits (291), Expect = 2e-25
Identities = 85/296 (28%), Positives = 140/296 (47%), Gaps = 7/296 (2%)
Query: 558 TLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGL 617
T+L+ E S +E ++ +L+N I I + + + AT LGKA ++SS+ P DG+
Sbjct: 532 TMLAYSAEPQSIQDHVEASIADLQNMRFIDIDD---DGDFQATLLGKAVVASSLDPEDGI 588
Query: 618 TLFCELQKARQCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELV 677
+ EL+KA + VL+ D+H++Y TP ++W + + L + +V +L+
Sbjct: 589 FVHNELKKALKAFVLDGDMHVLYNFTPVH-DLDGVQVNWKVFWHEMQYLDASGFRVMDLL 647
Query: 678 GVQESFIIKCLRGLNMKH-LDSNKLNIHK--RFYTALALQDLVNEVHLSEVANKFQCARG 734
G++ + K L G MK D K + + RFY AL L+DL NE + +VA K+ RG
Sbjct: 648 GLKPFIVDKMLSGGIMKESTDKEKEDARRYHRFYLALQLRDLCNEKPIHQVAEKYDMPRG 707
Query: 735 FLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMR 794
+Q L Q FA + FC+ +GW +M + F DRL G +
Sbjct: 708 SVQNLAQTCEGFAAGMIKFCETMGWGAMAAALDHFSDRLKAGARSDLLALAKITFVKSRT 767
Query: 795 ARTLFDAGFEXXXXXXXXXXXXXENVLLKSVPFESAKERENDEKGDIKKRTKIKNI 850
AR +D G + VL+++ P + ++++K K K K I
Sbjct: 768 ARIFWDNGLKTVAAVANADPKELLPVLMQAQPNKVKLGAKDEQKFKDKLLAKAKII 823
>UniRef50_Q02DA6 Cluster: Transcriptional regulator, Fis family; n=1;
Solibacter usitatus Ellin6076|Rep: Transcriptional
regulator, Fis family - Solibacter usitatus (strain
Ellin6076)
Length = 865
Score = 163 bits (396), Expect = 3e-38
Identities = 122/415 (29%), Positives = 195/415 (46%), Gaps = 31/415 (7%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
+E+ + ++L+ E GI +D + RL + L + + G FN +S + + K
Sbjct: 465 IELPLTRVLARMERTGIRIDGAELKRLSVLMESQISGLTAEIHALAGKPFNISSPQQLGK 524
Query: 1137 VL----------GIYNGRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
VL G+ ST VL + I V+ +R+L + K Y
Sbjct: 525 VLFEDLNLPAPVKYGKGKTISTAADVLDELAAEHEIVRKVLEYRQLTKL--KGTYVDALP 582
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
A I R+ +S++ T TGR++ PNLQN+P S+ E+
Sbjct: 583 ALIDPATGRLHTSFNQTGAATGRLSSSNPNLQNIPIRTSL-----------GREI----- 626
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F G ++ ADY Q+E+RLL H S D L + + D+ AA VP V
Sbjct: 627 RAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMV 686
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ R+ AK + +GI+YG+ L+ L + EA ++ ++ Y ++ F + I E
Sbjct: 687 TPEARRDAKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIAEV 746
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINS 1423
++ G +TL GR R +P+I + R AER AVN+ +QG+AAD+ K AM I+ + +
Sbjct: 747 RKTGVTKTLFGRERPIPEINGRNPNARGFAERTAVNSPLQGTAADLIKLAMVRIDAALAA 806
Query: 1424 FNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
+ ++LQ+HDEL++E ++K ME ELKVPL V + G W
Sbjct: 807 GGFQAAMLLQVHDELVFECPPEELDEVSRMVKREMEGACELKVPLVVDVGSGDNW 861
>UniRef50_Q1GVH6 Cluster: DNA polymerase I; n=32;
Alphaproteobacteria|Rep: DNA polymerase I - Sphingopyxis
alaskensis (Sphingomonas alaskensis)
Length = 937
Score = 161 bits (390), Expect = 2e-37
Identities = 114/421 (27%), Positives = 210/421 (49%), Gaps = 40/421 (9%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
V+ + ++ E GI+VD++ +++L + + ++ + + G F S + + +
Sbjct: 536 VDRPLAAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGEIHALAGQPFAIGSPRQLGE 595
Query: 1137 VL----GIYNGRKT-----STRKSVLSS---HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L G+ GRK ST ++ L PI+ ++ WR+L + + L E+
Sbjct: 596 ILFDKMGLKGGRKGKSGDWSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQ 655
Query: 1185 ACIYSEGDRIMSSYSTFTC-TGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ + R+ +SYS TGR++ +PNLQN+P + +
Sbjct: 656 --VNATTGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEVGRQI---------------- 697
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R+ F AAPG V+++ADY Q+E+RL H ++ L D+ + A GEV
Sbjct: 698 RDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHAATAIELF----GEV 753
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
+ D R KAK + + I+YG+ L+ L+++ EA + + +P I + +E
Sbjct: 754 NRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQALISRYFERFPGISDYISDTLETA 813
Query: 1364 KRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI-N 1422
+ +G+ ETL GR+ + P I + + R +ER A+N IQG++AD+ K AM + + +
Sbjct: 814 RARGYTETLFGRKTWFPRIKAANQNERAGSERAAINAPIQGTSADLIKRAMARMPGALAD 873
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVM----EDTVELKVPLPVKLKCGYTW 1478
+ +++LQ+HDEL++E E + ++++VM E ++L VPL V++ G +W
Sbjct: 874 AGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRAVMMGAAEPALKLSVPLEVEIGTGKSW 933
Query: 1479 G 1479
G
Sbjct: 934 G 934
>UniRef50_A2EB56 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Trichomonas vaginalis G3|Rep: Type
III restriction enzyme, res subunit family protein -
Trichomonas vaginalis G3
Length = 1042
Score = 160 bits (388), Expect = 3e-37
Identities = 130/460 (28%), Positives = 225/460 (48%), Gaps = 35/460 (7%)
Query: 73 KLTASKEVRNTQKIQSKKLKDWGLPIEISKKY----EERGITEMFDWQLACLCNTKVLFD 128
K A+K + + +++ G+P + Y + IT++ DWQ+ LC +
Sbjct: 44 KKLATKIKKPKEYTVDEEMTSLGIPPFLQHAYLNGIPQPSITKLRDWQIE-LCKDENWRQ 102
Query: 129 CANLVYSAPTSAGKTLVAEILTIKTVLE-RQKKVIIILPFVSIVREKMFYLQNILSSSGI 187
N V PTS GKT+ A++ + + E + KVI LPFV++ EK + +
Sbjct: 103 GKNTVLLVPTSGGKTVAADLAVAQVLQENKNSKVIYTLPFVALANEKYTEYEKRFFEYQV 162
Query: 188 R--VEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
R + GS G ++AICT EKA++++N + G + +++DE+H++G++
Sbjct: 163 RPFYQNIGGSDFRRG-----NIAICTYEKAHALLNSAIQGGYSHSIKLIIIDEVHMIGEE 217
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATL--PNLETLATWLNAELFITTFRPIPLE 303
RG ++E L+ K K + K ++I ++AT+ + + LA W++ FI RP P++
Sbjct: 218 GRGSVIEALILKAKLMNDKP----RLITLTATINESDCQKLANWIDGNTFIWRTRPTPIK 273
Query: 304 EYCLVENKYY-----DKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKN 358
+ ++ + N + IL KSSN +++ L K SV++F T+N
Sbjct: 274 QIIKKQDGSLNLITNEGNLQKILTIKSSNDDKDHLMPLIRTLLSK-KPDSSVIVFVNTRN 332
Query: 359 RCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISF 418
+++ L+S + +N + L ++ L + +D+ I
Sbjct: 333 DTINISNLISKYMYNDKINLPKLKQPSEELINRRNKL--IKDLAANSGIIDENTANCIKS 390
Query: 419 GVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNL--PARKV---IIRSPVFQK 473
GV +HH GL +++R +IE A ++ I VLVAT+TLS+GVN+ AR + I R +K
Sbjct: 391 GVLFHHGGLLMEDRKLIEEAARNKTINVLVATTTLSAGVNIHGVARVIIHNIYRYNQKKK 450
Query: 474 QPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFN 513
Q + Y QM GRAGR G GE+ IC ++ + N
Sbjct: 451 QLMPASQYTQMVGRAGRSG--LPGEA-FICMKSNNQSEIN 487
Score = 66.9 bits (156), Expect = 4e-09
Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 6/208 (2%)
Query: 600 TALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIYL-VTPYSVSSQWGNI--DW 656
T G A SS++ +G L + K + L + ++HL+ L ++P SVS+ ++ D
Sbjct: 773 TKFGMAVAGSSLSVEEGKILKKIISKTEENLCISDEIHLLSLCISPLSVSNSVKSLPYDS 832
Query: 657 LHLLNLWESLTKAMKKVGELVGVQESFIIKCLR--GLNMKHLDSNKLNIHKRFYTALALQ 714
L+ ++ +K V + Q + ++ G N + + ++ R + A+ L+
Sbjct: 833 PILIRIFSQHRHVIKVVTGMNDAQIEHMQDLVKIYGGNGRINPAIDSDLD-RIFAAVILK 891
Query: 715 DLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLH 774
+L+NEV + E++ FQ G +Q LQ + T+AG + FC+ G + +++F+ RL+
Sbjct: 892 ELINEVPMKEISKMFQIDFGSIQKLQMEAATYAGQINRFCEITGSVVLAGALNKFRQRLN 951
Query: 775 FGIQXXXXXXXXXXXXNGMRARTLFDAG 802
F + + AR L D G
Sbjct: 952 FAARTDLLALMSIPSCSRDTARKLVDKG 979
>UniRef50_O26901 Cluster: Putative ski2-type helicase; n=3;
Methanobacteriaceae|Rep: Putative ski2-type helicase -
Methanobacterium thermoautotrophicum
Length = 690
Score = 159 bits (387), Expect = 4e-37
Identities = 127/428 (29%), Positives = 218/428 (50%), Gaps = 43/428 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
N + + PT++GKTL+ I +KTV+E + VI +P +SI EK+ + L GIRV
Sbjct: 40 NYIIAIPTASGKTLLGIIAALKTVMEGGR-VIYTVPLLSIQNEKIKEFRK-LEEHGIRV- 96
Query: 191 GFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYI 250
+ P + +A+ E +S+ R N + ++ ++VDE H++G+ RG +
Sbjct: 97 ----GKDP----RTSDIAVMVFESFDSL-TRFSWN-ILREVDLLIVDEFHMIGEYTRGPV 146
Query: 251 LELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVEN 310
+E +T+ + + ++++ +SATL N++ +A WL+A + +RP+PL L +
Sbjct: 147 IESAITRARTLNPS----VRIVALSATLSNMDEIAGWLDARVVEHDYRPVPLHREVL-DT 201
Query: 311 KYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSST 370
+ + K ND VLK+ ++++G L F T+ ESLA L+
Sbjct: 202 EMFGVREK--------------NDVVLKVLERSLEDGSQTLAFVSTRRFTESLASHLAD- 246
Query: 371 FCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLD 430
KI + + M+ + + +LE + + P L + + G+ +HHAGL
Sbjct: 247 --KISGKIPD-DMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNR 303
Query: 431 ERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPV--FQKQP--INILSYKQMSG 486
+R+IIE F+ G I ++ AT +L GVNLP+R V+IR + P I + Y+QMSG
Sbjct: 304 QREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTSQGPRRIPVFDYEQMSG 363
Query: 487 RAGRMGRDTKGESILICSEAEKKIGFN--LMMGDLDPVKS-CIETKEKYMRAILEIIASN 543
RAGR D G S LI ++ + + G+++ S IE ++ R I+ +AS
Sbjct: 364 RAGRPQYDDAGYSYLIARSHDEAMDLEEYYIRGEVERTTSRIIENRDALYRQIIAQVASG 423
Query: 544 ISCSKQEL 551
+S + +EL
Sbjct: 424 LSGTTEEL 431
>UniRef50_Q7WZP8 Cluster: DNA polymerase type I; n=1; Bacteroidetes
bacterium endosymbiont of Bemisia tabaci|Rep: DNA
polymerase type I - Bacteroidetes bacterium endosymbiont
of Bemisia tabaci
Length = 939
Score = 158 bits (384), Expect = 9e-37
Identities = 114/417 (27%), Positives = 211/417 (50%), Gaps = 34/417 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ ++++L EL G+ +D ++ L +++ + L++K + + FN +S K +
Sbjct: 525 VEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTFNIDSPKQLGV 584
Query: 1137 VL----GIYN------GRKTSTRKSVLS--SHNTPISSIVMYWRKLNAILTKILYPLTEK 1184
VL ++ G + +T +++L+ S PI ++M +R + + + L
Sbjct: 585 VLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRSTYVDALP-- 642
Query: 1185 ACIYSEGDRIMSSY-STFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
++ R+ ++Y T TGR++ PNLQ IP+R T + +
Sbjct: 643 TLLHPIDQRLHATYHQTVVTTGRLSATGPNLQQ------IPIR------TPTGRALR--- 687
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
+ G + SADY Q+E+R++ +++D+ + +SD D+ + A V
Sbjct: 688 KAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQDIHQITAQKLFKTVI--V 745
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLD-VSEMEASLFMDSFERTYPAIRVFTKSVIEE 1362
D ++RQKAK +GIIYG+ LS+ ++ +S EA+ ++++ +P I+ + I
Sbjct: 746 DQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAYFEAFPGIKTYIDDSIAH 805
Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGIN 1422
+ G+V TL GR+R+LPD+ + + R A R A+NT IQGSAA++ K AM I+D +
Sbjct: 806 AEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGSAAEMIKLAMIHIQDWLE 865
Query: 1423 SFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELK-VPLPVKLKCGYTW 1478
+LI+Q+HDEL++ V + + + +M + L+ VP+ V G W
Sbjct: 866 KHKLSTKLIIQVHDELVFNVPRSEIADIQHHIPLLMATALPLENVPIKVNWNIGANW 922
>UniRef50_Q58524 Cluster: Putative ski2-type helicase (EC 3.6.1.-)
[Contains: Endonuclease PI- MjaHel (EC 3.1.-.-) (Mja Hel
intein) (Mja Pep3 intein)]; n=1; Methanocaldococcus
jannaschii|Rep: Putative ski2-type helicase (EC 3.6.1.-)
[Contains: Endonuclease PI- MjaHel (EC 3.1.-.-) (Mja Hel
intein) (Mja Pep3 intein)] - Methanococcus jannaschii
Length = 1195
Score = 157 bits (380), Expect = 3e-36
Identities = 110/333 (33%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLE-----RQKKVIIILPFVSIVREKMFYLQNILSSS 185
N + S PT++GKTL+ E+ I +L+ KK I I+P ++ EK ++
Sbjct: 34 NFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKYERY 93
Query: 186 GIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
G+R+ +G + H+ I T EK +S+ +D I D+ VVVDE+HL+ D+
Sbjct: 94 GLRIALSIGDYDEDEDLSKYHLIITTAEKLDSLWRHKIDW--INDVSVVVVDEIHLINDE 151
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEY 305
RG LE+LLTK+K + +Q+IG+SAT+ N + LA WLNAEL + +RP+ L++
Sbjct: 152 TRGGTLEILLTKLK------EFNVQIIGLSATIGNPDELAEWLNAELIVDDWRPVELKKG 205
Query: 306 CLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQ 365
NG+ I E K+ + N+ + + ++ +KEG L+FC TK + A+
Sbjct: 206 IYKNEAIEFINGE-IREIKAVD-----NNDIYNLVVDCVKEGGCCLVFCNTKRNAVNEAK 259
Query: 366 LLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHA 425
L+ K E + +R + +E IL LE P + + L + I G +HHA
Sbjct: 260 KLN--LKKFLTEEEK----IRLKEIAEEILSILE----PPTEMCKTLAECILNGSAFHHA 309
Query: 426 GLTLDERDIIEGAFKSGAIRVLVATSTLSSGVN 458
GLT R I+E AF+ I+V+ T TL N
Sbjct: 310 GLTYQHRKIVEDAFRKRLIKVICCTPTLCLNAN 342
Score = 46.0 bits (104), Expect = 0.008
Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 45/355 (12%)
Query: 454 SSGVNLPARKVIIRSPV-FQKQP---INILSYKQMSGRAGRMGRDTKGESILIC-SEAEK 508
S+G+NLP R+ I++ F + I I+ +Q GRAGR G D GE I++ ++ +
Sbjct: 839 SAGLNLPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 509 KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILS 568
+ + +P+ S + + +L +IA+ + +L + T + Q
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRDEYDLEWFIRNTFYAHQYG--- 955
Query: 569 QNLILEDTLKELENYELIR-IQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR 627
L + K + E+IR ++ N ++ T LGK + P + L++
Sbjct: 956 ---NLREVAKNIN--EVIRFLEENEFIIDFMPTELGKRVSELYIDPLSAKFIIDGLEEME 1010
Query: 628 QCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKC 687
E +++ +YL++ ++ + L ++ S +E +I
Sbjct: 1011 N----EEEIYYLYLISK--------TLEMMPNLRVYNS--------------EELNLIDE 1044
Query: 688 LRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFA 747
+ L +K + L + F TA L D +NEV E+ +++ G L+ + +
Sbjct: 1045 MDSLGIKSFEIEDL---EAFKTAKMLYDWINEVPEDEILKRYKIEPGILRYKVENAVWIM 1101
Query: 748 GMVTAFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAG 802
+ K +G KS +I + + RL +G + +RAR L++AG
Sbjct: 1102 HALKEIAKLIG-KSSDI-PEKLEIRLEYGAKEDIIELLSIKYIGRVRARKLYNAG 1154
>UniRef50_Q8MWB5 Cluster: DNA polymerase I-like protein A; n=2;
Trypanosoma brucei|Rep: DNA polymerase I-like protein A -
Trypanosoma brucei
Length = 958
Score = 155 bits (377), Expect = 7e-36
Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 4/254 (1%)
Query: 1231 DNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKS 1290
D ++ + F R G +VS DY Q+E+R+L H S DSAL ++ D+ +S
Sbjct: 695 DGPVQEKEVSF-IRRCLGVPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRS 753
Query: 1291 IAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYP 1350
IA + V + R AK++ +GI+YG G + L+Q + VS +A F+ +P
Sbjct: 754 IAEII--FRKTSVTGEERSLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFP 811
Query: 1351 AIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIA 1410
+ + + +I++C+ G V TLSGR R +PDI + ++R+ AERQA NT++QGSAAD+
Sbjct: 812 TVDAYQRRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVM 871
Query: 1411 KSAMCSIE-DGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLP 1469
K M ++E + + P RL+LQ+HDE+I V + + L VPL
Sbjct: 872 KLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPNHMLHSIVPAAMHAFAHPISLLVPLL 931
Query: 1470 VKLKCGYTWGALDE 1483
V K G G L+E
Sbjct: 932 VTTKVGRLLGDLEE 945
>UniRef50_A7RZN4 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 203
Score = 154 bits (374), Expect = 2e-35
Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 1259 DYCQLEMRLLTHFSEDSALTRIMK--SDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCY 1316
D+ +E+RLL + S+D L R+ + +D+F + + W VP +VD R++ K++ Y
Sbjct: 1 DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60
Query: 1317 GIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRR 1376
+IYG+G + L L V EA FM+SF +P I F++ IE+C GFV T+ R+
Sbjct: 61 SVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCIEDCNTNGFVSTIFKRK 120
Query: 1377 RYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI-NSFNPKPRLILQMH 1435
R++P I S R+ AERQAVN ++QGSAAD+ KSAM I + + K RL+LQ+H
Sbjct: 121 RWIPHIKSRDFQIRSQAERQAVNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIH 180
Query: 1436 DELIYEVHETNKSR 1449
DEL+ EV +T+ R
Sbjct: 181 DELLLEVADTDIDR 194
>UniRef50_A2ER07 Cluster: DEAD/DEAH box helicase family protein;
n=2; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 774
Score = 154 bits (374), Expect = 2e-35
Identities = 176/711 (24%), Positives = 310/711 (43%), Gaps = 78/711 (10%)
Query: 115 WQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK--KVIIILPFVSIVR 172
WQ + L + N + APT+ GKTL+AE+ LER K++ +PFV++
Sbjct: 58 WQRSLLLKAEWQLQ-KNAIVLAPTAGGKTLIAEV-AFAQALERNPSAKILYCVPFVALAT 115
Query: 173 EKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLG 232
EK Y L + V + AG + + +CT E+A+S+IN +G DL
Sbjct: 116 EK--YNLFTLRFPSVTVRAYYHDIG-AGPLTQRSIGVCTYERAHSLINSSA-SGKF-DLD 170
Query: 233 AVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLP--NLETLATWLNA 290
+V+DE H+L D +RG LE L+ + S ++IG++ATL + L+ WL
Sbjct: 171 LIVIDEFHMLDDNDRGANLESLIVLSMLLPSHP----RIIGLTATLTPDDAVKLSIWLGG 226
Query: 291 ELFITTFRPIPLEEY---CLVENKYYDKNGKYILEA-----KSSNYGVSCNDSVLKICLE 342
F P + C + YI A K + +S S++ ++
Sbjct: 227 FSFKAEINESPSRQQFYICRPNGELCPVRKGYICPAFRTLKKDDKFYIS---SIIAPFMK 283
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK 402
+ +VLIF T+ E +A L+ I E Q + +LE L++
Sbjct: 284 MNSK--NVLIFAQTRKESEEIALSLAQMLGNINKEDENI------QTERKKLLEKLDESF 335
Query: 403 NSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPAR 462
+ + G+ +HHAGLT +ER +IE AF++G I+++VATSTLS+GV+
Sbjct: 336 SCVMN-----------GIAFHHAGLTQEERSLIEDAFRNGIIKIIVATSTLSAGVDFQNI 384
Query: 463 KVIIRSPVFQKQ-PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDP 521
V++ F+ I+ + QM GRAGR R + ++ +++ LM ++ P
Sbjct: 385 SVVVILSAFKSNLQISPSKFMQMCGRAGRNERSSGTVVVVERFNSDETQILRLMRNEIPP 444
Query: 522 VK-SCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKEL 580
+K IE + + + IL + A +KQ + K +L +I + + +
Sbjct: 445 IKLKLIENQNELAKTILHMHA---FFTKQS---------IGNLKSVLYSYIIEGNEVSQE 492
Query: 581 ENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKARQCLVLETDLHLIY 640
L +++N + G+A S++ N+ + L L+K + ++ + +Y
Sbjct: 493 IQAALDSLKSNGMCISPKVSKFGRAVALSNLNINNAIHLNAILRKNMRNFMMSDEAFTMY 552
Query: 641 LVTPYSVSSQWGNIDWLHLLN----LWESLTKAMKKVGELVGVQESFIIK-----CLRGL 691
L + NI +L + N +W + K + + S IIK C +GL
Sbjct: 553 LCC-------YPNISFLRIPNYNEDIWSVIMKRHCEAANAILNSASDIIKIRASDCDKGL 605
Query: 692 NMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVT 751
K D N I + + A L E + ++ +G ++ L+ +S +A V
Sbjct: 606 -PKMNDQND-EILGKIFAAAILVSFSEENSVDSISKTHGVDKGAVENLRDSSVVYATQVV 663
Query: 752 AFCKQLGWKSMEILISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAG 802
FC+ G++ + +++ ++R+ G + + AR+LF AG
Sbjct: 664 KFCEASGFREISAILAVARNRIQHGAKNDVIPLMSLGCSQSI-ARSLFSAG 713
>UniRef50_A0BQ90 Cluster: Chromosome undetermined scaffold_120,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_120,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 2066
Score = 153 bits (371), Expect = 3e-35
Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 48/425 (11%)
Query: 124 KVLFDCANLVYSAPTSAGKTLVAEILTIKTV--------LERQK-KVIIILPFVSIVREK 174
K L N++ APT AGKT +A + ++T+ ++ QK K+I I P ++V E
Sbjct: 448 KALLSNENMLICAPTGAGKTNIALLTMLQTIGDYYQNGIVDIQKFKIIYIAPMKALVNEM 507
Query: 175 MFYLQNILSSSGIRVEGFMGSQSPAGGMQN-VHVAICTIEKANSMINRLLDNGNIEDLGA 233
+ QN L I+V G N + V I T EK + + ++ N I +
Sbjct: 508 VHNFQNRLEPYNIKVAEVTGDTHLTKHQLNTIQVLIATPEKWDILTRKIQQNDFISLVRL 567
Query: 234 VVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-- 291
V++DE+HLL D +RG ++E ++ + + + +++++G+SATLPN +AT++ +
Sbjct: 568 VIIDEIHLLHD-SRGPVIESIIARQLKLMEERQEVVRIVGLSATLPNYSDVATFIRVKQS 626
Query: 292 ---LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGC 348
F ++RP+PL++ +Y N E K + N+ + + +E I +
Sbjct: 627 GVFFFDNSYRPVPLQQ------QYIGIN-----EKKPIRRMLLTNEILYEKVIERITKS- 674
Query: 349 SVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILE---ALEQLKNSP 405
+L+F ++ A+ L ++ E +R + +S+ ILE A E +K++
Sbjct: 675 QILVFVHSRKETVKTAKTLK----EMAFSKDELSKFIREESSSKKILETVIAQEDIKSAD 730
Query: 406 VGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVI 465
L++ ++ G+ HHAGL +RD++E F+ I++L++TSTL+ GVNLPA VI
Sbjct: 731 ------LKELLASGIAIHHAGLCRGDRDLVESLFEKKNIQILISTSTLAWGVNLPAHTVI 784
Query: 466 IR-----SPVFQKQ-PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDL 519
I+ SP K ++ QM GRAGR DT GE I++ + E K +L+ L
Sbjct: 785 IKGTQIYSPDQGKWIELSPQDILQMMGRAGRPRYDTSGEGIILTTYQELKYYLSLLNVQL 844
Query: 520 DPVKS 524
P++S
Sbjct: 845 -PIES 848
>UniRef50_Q7RMH4 Cluster: Putative uncharacterized protein PY02206;
n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY02206 - Plasmodium yoelii yoelii
Length = 901
Score = 153 bits (370), Expect = 5e-35
Identities = 130/491 (26%), Positives = 235/491 (47%), Gaps = 61/491 (12%)
Query: 6 NDLIDTQILPEHVEFLDNCFDNSFALQSSLVVVKEYLEKSENKQKHVNRRFVNTASNNSL 65
N++ ++ E +E L N F+N EY+E + N +K + A++
Sbjct: 68 NEIKIYELYDEQIECLRNAFEN------------EYIESNLNDKKD---DIIYDATHVQD 112
Query: 66 LNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKV 125
+N+ + ++ E + K L + +P + +K M + Q+ + N K
Sbjct: 113 INEILNSEFFSAFENFGEKGEMVKCLDNNVMPEHVQEK-------NMNETQIKNIQNDKE 165
Query: 126 LFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSS 185
+ N ++S PT GKTL+ +I+ I+ +L + +VI+ LP VS++ EK Y + +L +S
Sbjct: 166 FYK--NFLFSMPTGMGKTLIYDIIIIRFILYKGYRVILTLPTVSLINEKYDYYEMLLGNS 223
Query: 186 --GIRVEGFMGSQSPAGGMQ-NVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLL 242
+ ++ F + +A+CT E+AN +IN ++ N N++ ++DE+H +
Sbjct: 224 TVSLNIKKFNSFNFTGYSYSLSTDIALCTYEQANIIINIIIKN-NLKSNFIFIIDEIHYI 282
Query: 243 GDQNRGYILELLLTKIKYVTSKSDLL--IQVIGMSATLPNLETLATWLNAELFITTFRPI 300
D RG+ +E LLTKIKY + + ++ G SAT N++ + WL A++ T P
Sbjct: 283 NDLQRGFFIESLLTKIKYAQKNYNHIFNLRTYGFSATFSNIDHIGKWLEAKIRRTLDMP- 341
Query: 301 PLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
Y+L+ Y +S + +LK +VLIFC TK +
Sbjct: 342 ------------------YVLDPDHLGYILS-EELILK---------RNVLIFCSTKKQS 373
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGV 420
E +A +S+ + + F + + + ++ L ++K+ + + +I +K I G+
Sbjct: 374 EKVASFISNVI-SYYLKNNYFNISIELLEKRKKLINQLNEIKDININILEI-EKLIINGI 431
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILS 480
YHH+ L +E+DIIE A ++ + L T+TLS GVN +IIR+ +
Sbjct: 432 FYHHSELGKNEKDIIENALRNNILFCLCCTTTLSVGVNFNVHTIIIRNIKIGISFLTKDQ 491
Query: 481 YKQMSGRAGRM 491
Q+SGR GR+
Sbjct: 492 IIQISGRCGRL 502
>UniRef50_Q55CI8 Cluster: DEAD/DEAH box helicase; n=3;
Eukaryota|Rep: DEAD/DEAH box helicase - Dictyostelium
discoideum AX4
Length = 2237
Score = 152 bits (369), Expect = 6e-35
Identities = 125/419 (29%), Positives = 211/419 (50%), Gaps = 54/419 (12%)
Query: 126 LFDCA-----NLVYSAPTSAGKTLVAEILTIKTVLERQK------------KVIIILPFV 168
LFDCA NL+ SAPTS+GKT VA +LTI + + + K++ I P
Sbjct: 559 LFDCAFKTDNNLLLSAPTSSGKTNVA-MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMK 617
Query: 169 SIVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGN 227
S+V+E + L S GI V G QS + + + T EK + + + D
Sbjct: 618 SLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAY 677
Query: 228 IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATW 287
+ + +++DE+HLL D+ RG +LE ++ + + + +++++G+SATLPN E +AT+
Sbjct: 678 TQLVKLIIIDEIHLLHDE-RGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATF 736
Query: 288 LNAE-----LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLE 342
L E F +++RPIPLE+ +Y + + I + + CND E
Sbjct: 737 LRVEPDGVFYFDSSYRPIPLEQ------QYIGISDRGIKQLQR------CNDITFTKVSE 784
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHI-LEALEQL 401
+ + +LIF ++ + L E +R + E + A +Q+
Sbjct: 785 RVGDH-QILIFVHSRRETAKTGKDLRDR----AVEDQSIDRYIRDPASREILRATASKQI 839
Query: 402 KNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPA 461
+N+ L+ + +G+G HHAGL+ +R ++E F I+VL++T+TL+ GVNLPA
Sbjct: 840 QNAE------LKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPA 893
Query: 462 RKVIIR-SPVFQKQ----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLM 515
VII+ + ++ + ++ L QM GRAGR D +GE I+I S+ E + +L+
Sbjct: 894 HTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLL 952
Score = 109 bits (262), Expect = 6e-22
Identities = 126/502 (25%), Positives = 237/502 (47%), Gaps = 65/502 (12%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPFVSIVREKMFYLQN---ILSSSG 186
N SAPT++GKT+ AEI I+ + K KV+ + P + ++ N + S G
Sbjct: 1415 NAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFG 1474
Query: 187 IRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
+ V G + ++ + EK + + + ++ + ++VDELHL+G +
Sbjct: 1475 LVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGE 1534
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LFITTFRPI 300
G +E+++++++Y+++++ ++VI +S+++ N L W+ A F RPI
Sbjct: 1535 Y-GPTMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPI 1593
Query: 301 PLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
P+ EY + ++ N + + K + Y V+ N + I +F T+
Sbjct: 1594 PV-EYQIQGFEFPHFNARMLAMTKPTVYEVAKNKNQQSI------------VFVPTRKLS 1640
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEA-LEQLKNSPVGLDQILQKTISFG 419
SLA + + E + + EH+L LE + + L++++ G
Sbjct: 1641 RSLAADIIANVSSF-----EDTLTKPYLVCEEHVLTPYLEDVDSF------ALKQSLQMG 1689
Query: 420 VGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGV-NLPARKVIIR-SPVFQKQPIN 477
V ++H GLT ER ++E F+SG+IRVL+AT +++ + N+ A+ V+I + ++Q + I
Sbjct: 1690 VAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIR 1749
Query: 478 ILSYK-----QMSGRAGRMGR----DTKGESILICSEAEKKIGFNLMMGDLDPVKSCIET 528
+ Y QM GRAG+ K +L+ A KK + + + + PV+S ++
Sbjct: 1750 YIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLD- 1808
Query: 529 KEKYMRAILEIIASNISCSKQELLLYTDCTL-------------LSAQKEI-LSQNL--I 572
+ + EI+ I+ KQ+ L Y T LS + LS++L +
Sbjct: 1809 HCLHDQFNSEIVTKTIT-KKQDALDYLTWTFLYRRLNQNPNYYNLSGVSHLHLSEHLSEL 1867
Query: 573 LEDTLKELENYELIRIQNNHSE 594
+E+TL ELE I IQ++ +
Sbjct: 1868 VENTLVELEQSNCITIQDDQDK 1889
>UniRef50_UPI00005A5606 Cluster: PREDICTED: similar to DNA polymerase
theta (DNA polymerase eta); n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to DNA polymerase
theta (DNA polymerase eta) - Canis familiaris
Length = 576
Score = 152 bits (368), Expect = 8e-35
Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 1231 DNTTSDEVIEFNC--RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVF 1288
+ SD+ + F+ R+ F G ++++ADY QLE+R+L H S D L +++ + DVF
Sbjct: 311 EERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVF 370
Query: 1289 KSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERT 1348
+SIAA W + V DDLRQ+AKQ+CYGIIYGMG K+L + + + E +A+ +++SF+
Sbjct: 371 RSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIESFKSR 430
Query: 1349 YPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSH 1385
Y I F + ++ CKR GFV+T+ GRRRYLP I +
Sbjct: 431 YTGINHFMRETVKNCKRNGFVQTILGRRRYLPGINDN 467
Score = 67.7 bits (158), Expect = 2e-09
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE+ L+ EL+GI ++ D ++ +A+++ G+ F+F SS D+A+
Sbjct: 132 VEMPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDDIAE 191
Query: 1137 VLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACI--YSEGDRI 1194
+ N K + H P+ +++ WR++ +TK+++PL + + + +RI
Sbjct: 192 --DVLNKLK--------ALH--PLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERI 239
Query: 1195 MSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTS 1235
+ T TGRIT EPN+QNVPR F I + L ++ S
Sbjct: 240 YPVSQSHTATGRITFMEPNIQNVPRDFEIKMPILVGESPPS 280
Score = 38.7 bits (86), Expect = 1.2
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 1383 TSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFN 1425
TS T AERQA+NT +QGSAADI K A +I+ + + +
Sbjct: 510 TSGPTVPSLNAERQAINTTVQGSAADIVKIATVNIQKQLETLH 552
>UniRef50_P32639 Cluster: Pre-mRNA-splicing helicase BRR2; n=2;
Saccharomyces cerevisiae|Rep: Pre-mRNA-splicing helicase
BRR2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 2163
Score = 151 bits (367), Expect = 1e-34
Identities = 130/452 (28%), Positives = 223/452 (49%), Gaps = 50/452 (11%)
Query: 130 ANLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVSIVREKMFYL 178
+N++ APT +GKT +A + +K + K++ I P ++V+E++
Sbjct: 515 SNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREF 574
Query: 179 QNILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVD 237
Q L+ GI+V G S+ + V + T EK + + +E + +++D
Sbjct: 575 QRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIID 634
Query: 238 ELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----L 292
E+HLL D +RG +LE ++ + + + ++IG+SATLPN E + +L
Sbjct: 635 EIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFY 693
Query: 293 FITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVL 351
F ++FRP PL +++C ++ ++N L+A ND+ + LE+I EG ++
Sbjct: 694 FDSSFRPCPLSQQFCGIK----ERNSLKKLKAM--------NDACYEKVLESINEGNQII 741
Query: 352 IFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQI 411
+F ++ A L + F E + + ++ S+ IL+ + N LD
Sbjct: 742 VFVHSRKETSRTATWLKNKFA----EENITHKLTKNDAGSKQILKT--EAANV---LDPS 792
Query: 412 LQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPV 470
L+K I G+G HHAGLT +R + E F G ++VLV T+TL+ GVNLPA VII+ + V
Sbjct: 793 LRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDV 852
Query: 471 FQK-----QPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSC 525
+ + ++ QM GRAGR DT GE I+I ++ + +++ L P++S
Sbjct: 853 YSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQL-PIESQ 911
Query: 526 IETKEKYMRAILEIIASNISCSKQEL--LLYT 555
+K E++A NI C + L YT
Sbjct: 912 FVSK-LVDNLNAEVVAGNIKCRNDAVNWLAYT 942
>UniRef50_Q9FNQ1 Cluster: RNA helicase; n=6; Eukaryota|Rep: RNA
helicase - Arabidopsis thaliana (Mouse-ear cress)
Length = 2157
Score = 151 bits (365), Expect = 2e-34
Identities = 129/446 (28%), Positives = 223/446 (50%), Gaps = 46/446 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQKKVIIILPFVSIVREKMF-YLQNILSSSGIR 188
N++ APT +GKT+ AE+ ++ + KV+ I P +IVRE+M + +++++ G
Sbjct: 1373 NVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKE 1432
Query: 189 VEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G +P + + + I T EK + + ++ +G V++DE+HLLG +R
Sbjct: 1433 MVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLG-ADR 1491
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLN-AELFITTF----RPIPL 302
G ILE+++++++Y++S+++ ++ +G+S L N LA WL E+ + F RP+P+
Sbjct: 1492 GPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPI 1551
Query: 303 EEYCL-VENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
E + KYY + Y C S K VLIF ++ R
Sbjct: 1552 EVHIQGYPGKYYCPR---MNSMNKPAYAAICTHSPTK----------PVLIF-VSSRRQT 1597
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVG 421
L L F +F ++ E + L Q+ DQ L+ T+ FG+G
Sbjct: 1598 RLTALDLIQFAASDEHPRQF-----LSVSEEDLQMVLSQI------TDQNLRHTLQFGIG 1646
Query: 422 YHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF----QKQPIN 477
HHAGL +R +E F + I+VLV+TSTL+ GVNLPA VII+ + K+ ++
Sbjct: 1647 LHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVD 1706
Query: 478 --ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETK-EKYMR 534
+ QM GRAGR D G+++++ E +K + + + PV+S ++ K +
Sbjct: 1707 FPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSF-YKKFLYEPFPVESSLKEKLHDHFN 1765
Query: 535 AILEIIASNISCSKQELLLYTDCTLL 560
A EI++ I +K++ + Y T L
Sbjct: 1766 A--EIVSGTIG-NKEDAVHYLTWTYL 1788
Score = 113 bits (272), Expect = 3e-23
Identities = 103/416 (24%), Positives = 188/416 (45%), Gaps = 44/416 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK---------KVIIILPFVSIVREKMFYLQNI 181
N++ APT AGKT +A I + + + + K++ + P ++ E
Sbjct: 525 NILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRR 584
Query: 182 LSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELH 240
L+ + V+ G Q ++ + + T EK + + + D + +++DE+H
Sbjct: 585 LAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVH 644
Query: 241 LLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL------FI 294
LL D +RG ++E L+ + + +I+++G+SATLP+ +A +L F
Sbjct: 645 LLND-DRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFD 703
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
+++RP+PL + +Y I E + N+ K +++IK+G +IF
Sbjct: 704 SSYRPVPLAQ------QYIG-----ITEHNFAARNELLNEICYKKVVDSIKQGHQAMIFV 752
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
++ A+ L E + ++ + + L + +K+ ++ L K
Sbjct: 753 HSRKDTSKTAEKLVDL-----ARQYETLDLFTNETHPQFQLMKKDVMKSR----NKDLVK 803
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQK- 473
G G HHAG+ +R + E F G ++VLV T+TL+ GVNLPA V+I+
Sbjct: 804 FFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDA 863
Query: 474 -----QPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS 524
+ + +L Q+ GRAGR D GE I+I S + L+ L P++S
Sbjct: 864 KAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQL-PIES 918
>UniRef50_A2DUA0 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Trichomonas vaginalis G3|Rep: Type
III restriction enzyme, res subunit family protein -
Trichomonas vaginalis G3
Length = 930
Score = 151 bits (365), Expect = 2e-34
Identities = 112/400 (28%), Positives = 205/400 (51%), Gaps = 27/400 (6%)
Query: 396 EALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSS 455
+ +++L + GLD+ L + + GVG+HHAG+ L+ER I+E A K+ I V+VAT+TLS+
Sbjct: 446 QLIQKLSKTDTGLDESLARCVMNGVGFHHAGMLLEERKIVEEAAKNCTISVIVATTTLSA 505
Query: 456 GVNLPA--RKVIIRS-----PVFQKQPINILSYKQMSGRAGRMGRDTKGESILI-CSEAE 507
G+N+ + R VI + + Q+ N L Y QM+GRAGR G+ +++ ++ E
Sbjct: 506 GINIRSVTRVVIYEAYRYIHGIGQRLIPNSL-YTQMAGRAGR-DESIGGDVVVLGMNDKE 563
Query: 508 KKI-GFNLMMGD-LDPVKSCIETKEKYMRAILEIIASN-ISCSKQELLLYTDCTLLSAQK 564
++ F+ + L+ + + + + R +L+ ++ + + + + + +
Sbjct: 564 SELTDFSQLCSQRLEDINPHLLENDLFDRFLLQCFSTGLLKAGLEGAIEFIKNSFEALSN 623
Query: 565 EILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQ 624
+ L I +++L+ L N L+ + Y T +G+A S+M+ +G+ L ++
Sbjct: 624 KNLDFENIAKNSLERLRNRSLL-------DKDYKVTPVGRAIAESAMSIEEGIELQGIIK 676
Query: 625 KARQCLVLETDLHLIYLVTPYSVSSQWGNID-----WLHLLNLWESLTKAMKKVGELVGV 679
L LE D+H++YL P S + D W ++++ E++TK + + ++
Sbjct: 677 NVETGLSLEDDVHMLYLCIPPSAIANERTPDYDSDVWENIISKHETVTKLVSGI-SIINF 735
Query: 680 QESFI-IKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQG 738
Q+ FI K L G N + RFY A L ++++E LSEV +F +RG Q
Sbjct: 736 QKHFIETKHLGGKNKDEKHKKIDHELDRFYFACLLGEMIDERPLSEVTRRFSISRGAAQS 795
Query: 739 LQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQ 778
LQ FAG FC+++G + ++ F+ RL FG+Q
Sbjct: 796 LQMTCANFAGQTAKFCEKVGCPLLGTALNAFRKRLDFGVQ 835
Score = 103 bits (247), Expect = 4e-20
Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 22/272 (8%)
Query: 109 ITEMFDWQLACLCNTKVLFDCA-NLVYSAPTSAGKTLVAEILTIKTVLERQK--KVIIIL 165
I ++ WQ + + + + C N + PTS GKT+ A+I I +LER K + L
Sbjct: 83 IVKLRQWQRDLISSPE--WKCGKNGIILVPTSGGKTVAADI-AIAQMLERDPDGKALYAL 139
Query: 166 PFVSIVREKMFYLQNILSSSGIR--VEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLL 223
PFVS+ EK + +R + G+ G +A+CT EKA++++N L
Sbjct: 140 PFVSLASEKTTEFKARFFKHSVRPFYQNIGGADFRRGS-----IAVCTFEKAHALLNSAL 194
Query: 224 DNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATL--PNL 281
+G + +V+DE+H++ ++ RG ++E L+ K + K + I++IG++ATL ++
Sbjct: 195 RDGYFKKFKLIVIDEIHMINEEQRGAVIESLIEKCLLLREKHN--IRIIGLTATLNESDV 252
Query: 282 ETLATWLNAELFITTFRPIPLEEYCLVEN--KYYDKNG--KYILEAKSSNYGVSCNDSVL 337
+ +ATW+ FI RP ++ Y N Y NG K I KS N SV+
Sbjct: 253 DKIATWIGGFKFICESRPSRIKHYFKSTNGTLYVADNGEAKKISTMKSLNDDKKHILSVI 312
Query: 338 KICLETIKEGCSVLIFCMTKNRCESLAQLLSS 369
+ L K+ +VL+F + + S+A+ ++S
Sbjct: 313 RSVLRN-KKNSTVLVFVNNRKQTVSVAEYIAS 343
>UniRef50_Q6FKF7 Cluster: Similar to sp|P32639 Saccharomyces
cerevisiae YER172c RNA helicase- related protein; n=1;
Candida glabrata|Rep: Similar to sp|P32639 Saccharomyces
cerevisiae YER172c RNA helicase- related protein -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 2140
Score = 150 bits (363), Expect = 3e-34
Identities = 129/426 (30%), Positives = 215/426 (50%), Gaps = 52/426 (12%)
Query: 124 KVLFDCANLVYSAPTSAGKTLVAEILTIKTVLER------------QKKVIIILPFVSIV 171
K D NL+ APT AGKT VA +LTI VL + +++ + P ++V
Sbjct: 498 KAFHDDKNLLMCAPTGAGKTNVA-VLTILQVLSQYINEDTDSLKLNDFRIVYVAPLKALV 556
Query: 172 REKMFYLQNILSSSGIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIED 230
+E++ + LS+ GI+V G + ++ V + T EK + + + +N +
Sbjct: 557 QEQVREFERRLSNFGIKVSELTGDTTLTRSEIEKFQVLVTTPEKWDVLTRKNDENDIMLK 616
Query: 231 LGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNA 290
L +++DE+HLL DQ RG +LE L+ + K + ++I +SATLPN E +A +L
Sbjct: 617 LKLLIIDEIHLLNDQ-RGPVLESLIMRAKE-NCRLRSNPRIIALSATLPNYEQVAKFLQV 674
Query: 291 E-----LFITTFRPIPLEE-YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETI 344
F ++RP PL + +C V++ K ++ E C + K+C + +
Sbjct: 675 PEESIYYFDNSYRPCPLSQVFCGVKSTNSVKKLSFVNEV--------CFE---KVC-DAV 722
Query: 345 KEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNS 404
K+G V+IF ++ A+ ++ F + IL + NS IL++ E +
Sbjct: 723 KDGHQVIIFVHSRKETTRTAKFIADKFSSLEKN------ILFFEENSRSILKS-EGENSK 775
Query: 405 PVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKV 464
+ L +L + G+G HHAGL D+R + E F G +RVLV+T+TL+ GVNLPA V
Sbjct: 776 DIDLKTLLPQ----GIGIHHAGLARDDRSLSEDLFADGVLRVLVSTATLAWGVNLPAHTV 831
Query: 465 IIR-SPVFQKQPINILSYK-----QMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGD 518
II+ + ++ + N + QM GRAGR DT GE I+I ++ + + ++
Sbjct: 832 IIKGTDIYSPEVGNWIRLSPQDLLQMLGRAGRPRYDTSGEGIIITNQTDIQYYLGILNQQ 891
Query: 519 LDPVKS 524
L P++S
Sbjct: 892 L-PIES 896
Score = 47.6 bits (108), Expect = 0.003
Identities = 62/326 (19%), Positives = 139/326 (42%), Gaps = 29/326 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIIL----PFVSIVREKMFYLQNILSSSG 186
+L+ +P GKT +A + T+ ++ + ++I ++ S + M + ++I S
Sbjct: 1354 SLLVCSPPCTGKTTLALLATLSHIINTKGRIIYVVGNEKKLQSCYEKWMIFFKSINDS-- 1411
Query: 187 IRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
I+V G+ Q + H+ + + ++ + +R + D+ +V D++H +G
Sbjct: 1412 IKVGKLGGNLQDNLITFSHSHITLTSPQQVEVLTHRWRKLKLLLDVDLLVFDDIHEIGQG 1471
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEY 305
G E+ +++ ++ +++D ++I S L N +A W+ + T +
Sbjct: 1472 LTGANYEIAVSRFNFIKTQADFNPRIIAFSNCLLNPSDIAGWIGVKKENT-------HNF 1524
Query: 306 CLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQ 365
E++ Y ++A + + S+L + S L+ KN
Sbjct: 1525 ATDEDQSYRVIN---IKAFENIFANDYTRSMLLYATSFVLSSQSTLV----KN------- 1570
Query: 366 LLSSTFCKIGCEGSEFGMILRSQLNSE-HILEALEQLKNSPVGLDQILQKTISFGVGYHH 424
+L T K+G + ++ + NS+ H + + +++ QK +S+G+G H
Sbjct: 1571 VLLVTTGKVGALRAANEILALLKSNSKLHKISEITDFGIDQQDMEKSAQKYLSYGIGLCH 1630
Query: 425 AGLTLDERDIIEGAFKSGAIRVLVAT 450
G+ I F +G I VL+++
Sbjct: 1631 EGMKHATISNIVNLFNAGVISVLISS 1656
>UniRef50_Q9SYP1 Cluster: F9H16.5 protein; n=35; Eukaryota|Rep:
F9H16.5 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 2171
Score = 147 bits (356), Expect = 2e-33
Identities = 138/477 (28%), Positives = 228/477 (47%), Gaps = 66/477 (13%)
Query: 77 SKEV-RNTQKIQSKKLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYS 135
SK+V RN + ++ ++ DW P + R ++++D LF N++
Sbjct: 476 SKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYD---------TALFKAENILLC 526
Query: 136 APTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVSIVREKMFYLQNILSS 184
APT AGKT VA +LTI LE + K++ + P ++V E + L N L
Sbjct: 527 APTGAGKTNVA-MLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKD 585
Query: 185 SGIRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLG 243
G+ V G QS G ++ + + T EK + + + D + + +++DE+HLL
Sbjct: 586 YGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLH 645
Query: 244 DQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL------FITTF 297
D NRG +LE ++ + + I+++G+SATLPN E +A +L +L F ++
Sbjct: 646 D-NRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSY 704
Query: 298 RPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGC---SVLIFC 354
RP+PL + +Y + K L+ ND +C + + G VLIF
Sbjct: 705 RPVPLHQ------QYIGISVKKPLQRFQ-----LMND----LCYQKVLAGAGKHQVLIFV 749
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQL-KNSPVGLDQILQ 413
++ A+ + T L+ + +L + E + KNS L+
Sbjct: 750 HSRKETSKTARAIRDT----AMANDTLSRFLKEDSVTRDVLHSHEDIVKNSD------LK 799
Query: 414 KTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQ 472
+ +G HHAGL+ +R+I+E F G ++VLV+T+TL+ GVNLPA VII+ + V+
Sbjct: 800 DILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYN 859
Query: 473 KQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS 524
+ ++ L QM GRAGR D GE I+I +E + +LM L P++S
Sbjct: 860 PEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQL-PIES 915
Score = 78.2 bits (184), Expect = 2e-12
Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLE---RQKKVIIILPFVSIVREKMFYLQNILSSS-G 186
N++ +APT +GKT+ AE ++ E +V+ I P +I +E+ + G
Sbjct: 1368 NVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLG 1427
Query: 187 IRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
+RV G + ++ + I T EK +++ R ++ + +VDELHL+G Q
Sbjct: 1428 LRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQ 1487
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPI 300
+ G +LE+++++++Y++S+ I+++ +S +L N + L W+ A F RP+
Sbjct: 1488 H-GPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPV 1546
Query: 301 PLE 303
PLE
Sbjct: 1547 PLE 1549
Score = 55.6 bits (128), Expect = 1e-05
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
++ L++T+ G+GY H GL+ +++I+ F++G I+V V +S+L G L A V++
Sbjct: 1633 EETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMG 1692
Query: 469 PVFQKQPIN------ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ N + QM GRA R D G+ ++ C A +K + + + PV
Sbjct: 1693 TQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFC-HAPRKEYYKKFLYEAFPV 1751
Query: 523 KSCIE 527
+S ++
Sbjct: 1752 ESQLQ 1756
>UniRef50_A7TSN3 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 2175
Score = 147 bits (356), Expect = 2e-33
Identities = 127/422 (30%), Positives = 216/422 (51%), Gaps = 44/422 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQK----------KVIIILPFVSIVREKMFYLQ 179
NL+ APT AGKT +A + ++ + L R K I I P ++V+E++ Q
Sbjct: 520 NLLICAPTGAGKTNIALLAILRGLSLLRDDITSKLNINRFKAIYIAPLKALVQEQVREFQ 579
Query: 180 NILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDE 238
LS GI+V G S + + H+ + T EK + + + + ++ + V++DE
Sbjct: 580 RRLSPFGIKVSELTGDSNLTSQQISETHILVSTPEKWDIITRKSNELTFVKTVDLVIIDE 639
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LF 293
+HLL D RG +LE ++ + T+ S+ +++ +SATLPN + +A +L F
Sbjct: 640 VHLLND-TRGPVLESIVARAHLSTNPSERP-RIVALSATLPNYKDVARFLRVPDDGLFYF 697
Query: 294 ITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
+++RP PL +++C + + K I EA C D VL E++ EG V+I
Sbjct: 698 DSSYRPCPLSQQFCGITERNALKKLNAINEA--------CYDKVL----ESVSEGHQVII 745
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEG----SEFGMILRSQLNSEHILEALEQLKNSPVGL 408
F ++ AQ L + F SE G+ + SE+ ++ + + ++ V
Sbjct: 746 FVHSRKDTIRTAQYLKTRFSNENNLSKIIKSENGIKEILKRESENGIKEILKRESENVN- 804
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR- 467
+ LQ IS G+G HHAGL ++R + E F G ++VLV+T+TL+ GVNLPA VII+
Sbjct: 805 NSSLQTLISHGIGIHHAGLNRNDRSLSEDLFADGLLQVLVSTATLAWGVNLPAHTVIIKG 864
Query: 468 SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ V+ + ++ QM GRAGR DT GE ++I ++++ + ++ L P+
Sbjct: 865 TDVYSPEKGSWVQLSSQDILQMLGRAGRPRYDTHGEGVIITAQSDVQYYLAILNQQL-PI 923
Query: 523 KS 524
+S
Sbjct: 924 ES 925
Score = 52.0 bits (119), Expect = 1e-04
Identities = 67/326 (20%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILS--SSGIR 188
N++ ++GKT AE+ + + + + + I P + + S + G
Sbjct: 1380 NMLLCCAKASGKTTAAELALLNHWRQNKGRAVYINPVQQSIDNLLVSWNGKFSDIAGGKL 1439
Query: 189 VEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ S + H+ + T + ++ R NI+ + V+ D + D
Sbjct: 1440 INKLTNDNSINLKVLAQSHLILATPSQFINLSRRWRQRKNIQSIELVIYDNAQRVSDPAI 1499
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCL 307
G E L++++ ++S+ + ++++G+S+ + N W+ F PLE+
Sbjct: 1500 GPSYECLISQMNLMSSQLEKDLRIVGLSSCIANARDFGDWMGVNKKY-IFNYSPLEQIYP 1558
Query: 308 VE---NKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLA 364
V+ + Y D G SS + + + E+IK S ++F T+ C ++
Sbjct: 1559 VDIHLDGYDDVRG-------SSYSNLMLKKACNYVYNESIKSK-STIMFVSTRTDCIGVS 1610
Query: 365 QLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHH 424
+ L S E ++G S + +E L Q KN L+ T+ G+G +
Sbjct: 1611 KELISLI-----EDGKYGSFSNGLNKSNNEIEKL-QNKN--------LKSTLERGIGLIY 1656
Query: 425 AGLTLDERDIIEGAFKSGAIRVLVAT 450
G++ + DII F++ ++VLV T
Sbjct: 1657 EGISPVDLDIIFNLFEAQLLKVLVLT 1682
>UniRef50_Q55971 Cluster: DNA polymerase I; n=5; Cyanobacteria|Rep:
DNA polymerase I - Synechocystis sp. (strain PCC 6803)
Length = 986
Score = 147 bits (356), Expect = 2e-33
Identities = 135/510 (26%), Positives = 232/510 (45%), Gaps = 59/510 (11%)
Query: 1003 ETDSIQTVIKKIKVDMKKYSGMDLAQLTIKVNNRQTKLKNLTLAQESCVKAWAIEMISEK 1062
ET ++ + ++ + + S DL +K + L T Q + +A +++ K
Sbjct: 498 ETHNLTDLCRRYNLGLVALSYKDLG---LKKDQTIADLPLETAGQYCGLDCYATYLLASK 554
Query: 1063 QQNAL--YESYQNAIN-VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAF 1119
Q L Y + + +E + KIL+ E GI +D + + L + ++ ++ A+
Sbjct: 555 LQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAY 614
Query: 1120 KICGYHFNFNSSKDVAKVL----GIYNGRKTSTRKSVLSSHNT--------PISSIVMYW 1167
+ G FN +S K + +L G+ + T+ + H T PI ++
Sbjct: 615 EAAGESFNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEH 674
Query: 1168 RKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLR 1226
R L + + + L E + + RI + ++ T TGR++ PNLQN IP+R
Sbjct: 675 RTLAKLKSTYVDALPE--LVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQN------IPIR 726
Query: 1227 YLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVD 1286
SD R F ++VSADY Q+E+R+L H S++ L + D
Sbjct: 727 --------SD--FSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQD 776
Query: 1287 VFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFE 1346
V + A E ++ R K + +G+IYGMG + ++ +S +E F+D +
Sbjct: 777 VH-GVTAKLLFGKE-DITPAERNLGKTINFGVIYGMGAQRFARETGISAVEGREFIDRYH 834
Query: 1347 RTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRR---------------- 1390
RTY + + +++ E +G+V T+ GRRRY +T + R
Sbjct: 835 RTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYFNFVTEALRQLRGKTVTELDLVDVKMNY 894
Query: 1391 NTAE--RQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKS 1448
N A+ R A N IQGS+ADI K AM + + S+ + R++LQ+HDELI+E+
Sbjct: 895 NDAQLLRSAANAPIQGSSADIIKIAMVKLAKLLESY--QTRMLLQVHDELIFEMPPEEWE 952
Query: 1449 RFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
L+++ ME + L VPL V++ G W
Sbjct: 953 ELAPLIQNTMEQALTLSVPLVVEMHRGSNW 982
>UniRef50_Q4QB14 Cluster: DNA polymerase theta (Helicase domain only),
putative; n=3; Leishmania|Rep: DNA polymerase theta
(Helicase domain only), putative - Leishmania major
Length = 1881
Score = 147 bits (355), Expect = 3e-33
Identities = 76/173 (43%), Positives = 108/173 (62%), Gaps = 6/173 (3%)
Query: 94 WGLPIEISKKYE-ERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK 152
+GLP E+ Y RG+T ++DWQ L +V N VYS PTS GKTLVAE+ ++
Sbjct: 850 YGLPREVGHFYATRRGVTSLYDWQHDVLTRPEVR-QGGNFVYSLPTSGGKTLVAELSLLR 908
Query: 153 TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQS--PAGGMQNVHVAIC 210
VL R+K ++LPFVS+ EK LQ + ++ V+G GS P G V+V C
Sbjct: 909 CVLNRRKSCFLVLPFVSLAEEKTMALQPLTTAYDFNVDGHYGSSGRFPLSGAPAVYV--C 966
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTS 263
TIEKANS++N +L+ G +++GAVVVDELH++G+ RG LEL L+K+ + +
Sbjct: 967 TIEKANSLLNHMLEEGRTDEIGAVVVDELHMVGESGRGATLELFLSKVLVINA 1019
Score = 114 bits (274), Expect = 2e-23
Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 412 LQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF 471
L + I+FGV +HH GL +ERD+IE AF+ IR+L TSTL++GVNLPAR+VII++P
Sbjct: 1249 LSEVIAFGVAFHHGGLLAEERDLIETAFRRKHIRILCCTSTLAAGVNLPARRVIIKTPYV 1308
Query: 472 QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS-CIETKE 530
++ + Y QM GRAGR G D GES L+ S ++ G LM ++P S +E +
Sbjct: 1309 GREFLTKSRYLQMCGRAGRAGLDPYGESFLLLSSRDQARGHALMHAAVEPCSSKLLEDDQ 1368
Query: 531 KYMRAILEII 540
R++LE +
Sbjct: 1369 ALTRSLLECV 1378
Score = 105 bits (253), Expect = 7e-21
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 8/212 (3%)
Query: 598 VATALGKACLSSSMAPNDGLTLFCELQKARQC-LVLETDLHLIYLVTPYSVSSQWGNIDW 656
+ T+ G + + S + + L L EL + R L+L DLHL Y +TP + G DW
Sbjct: 1598 LVTSFGSSSVRSCFSVEEALLLRAELDELRHTGLILSDDLHLCYFLTPLR---EVGKCDW 1654
Query: 657 LHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLN--MKHLDSNKLNIH--KRFYTALA 712
L + ++ + +++ L+GV F+ + GL ++ + + + +RFY AL
Sbjct: 1655 ELLRLMMSRMSDSRQRIASLLGVDAYFVDQQAMGLGGPLQATEEGRRRLFTARRFYVALM 1714
Query: 713 LQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDR 772
L D++ EV ++ V ++ +RG LQ L +++ F+ +T+FC + W S+E ++S F R
Sbjct: 1715 LADVLAEVPMATVEQRYNVSRGQLQNLMRSASMFSSSITSFCHAMEWFSLEAVLSSFVKR 1774
Query: 773 LHFGIQXXXXXXXXXXXXNGMRARTLFDAGFE 804
L FG++ RAR L+ AGF+
Sbjct: 1775 LGFGVKPDLLPLMEIRGMQPPRARALWSAGFK 1806
Score = 65.7 bits (153), Expect = 9e-09
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 269 IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNY 328
+Q+IGMSAT+PNL TLA WL A F FRP+PL Y +V G +L N
Sbjct: 1076 LQIIGMSATVPNLRTLAEWLRAAYFEYDFRPVPLHAYSVV--------GGLVLRDGQHNE 1127
Query: 329 GVSCNDSVLKICLETIKE--GCSVLIFCMTKNRCESLAQ 365
+DSV + +E E SVLIFC ++ +C A+
Sbjct: 1128 RNLSSDSVTQHLVELATEVPDASVLIFCASRQQCVDTAK 1166
>UniRef50_A2DN52 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Trichomonas vaginalis G3|Rep: Type
III restriction enzyme, res subunit family protein -
Trichomonas vaginalis G3
Length = 2043
Score = 147 bits (355), Expect = 3e-33
Identities = 125/385 (32%), Positives = 193/385 (50%), Gaps = 39/385 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVL-ERQKKVIIILPFVSIVREKMFYLQNILSSSGIRV 189
NL+ SAPT AGKT++A + IKT+L E K I I P S+V+E + I +
Sbjct: 384 NLLISAPTGAGKTIIAVLAMIKTLLTENNSKAIYIAPMKSLVQEMVAKFTEIFDGYKKVI 443
Query: 190 EGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGY 249
E S + +Q + + T EK + + + + I+ + V++DE+HLL + +RG
Sbjct: 444 ELTGDSSASVSQLQGYDIIVSTPEKLDIISRKTGNQTFIDTIKLVIIDEIHLLHN-SRGP 502
Query: 250 ILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE---LFI--TTFRPIPLEE 304
+LE L+ ++K + S I++IG+SAT+PN+ +A +L LF+ FRP
Sbjct: 503 VLEALVARLKMLKYVSSSDIRLIGLSATMPNVGDIAEFLEVPEQGLFVFGEEFRP----- 557
Query: 305 YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLA 364
CL+ + E K + S N+ +I ET+K LIF ++ + A
Sbjct: 558 -CLLHKTFVG-----FKERKKVHLKASMNEYCYQIIEETLKNKHQTLIFVHSRREAQDTA 611
Query: 365 QLLSSTFCKIGCEGSEFGMILRSQLN-SEHILEALEQLKNSPVGLDQILQKTISFGVGYH 423
+ G E F LN SE I+ E+LK+ IL K G +H
Sbjct: 612 LAFYNMAISKG-EADNFSNDQNYLLNISEGIIN--EKLKS-------ILPK----GFAFH 657
Query: 424 HAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQKQ-----PIN 477
HAGL ++R IE F++ I+VLV+T+TL+ GVNLPA II+ + ++ + ++
Sbjct: 658 HAGLLREDRSRIEEEFRNKRIKVLVSTATLAWGVNLPAHIAIIKGTNIYNPELGDFDNLS 717
Query: 478 ILSYKQMSGRAGRMGRDTKGESILI 502
L QM GRAGR G D GE+ L+
Sbjct: 718 HLDVLQMFGRAGRPGLDIYGEAYLL 742
>UniRef50_O60072 Cluster: Putative helicase mug81; n=1;
Schizosaccharomyces pombe|Rep: Putative helicase mug81 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1935
Score = 146 bits (354), Expect = 4e-33
Identities = 122/442 (27%), Positives = 217/442 (49%), Gaps = 43/442 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPFVSIVREKMF-YLQNILSSSGIR 188
N+ APT +GKT+ AE+ T + + K KV+ I P ++V+E++ + ++ GI
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 189 VEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G +P + N ++ I T EK + + ++D+ +++DE+HLLG +R
Sbjct: 1212 MIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DR 1270
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTF----RPIPLE 303
G +LE++++++ YV S+++ ++V+G+S + N LA WLN + F RP+PLE
Sbjct: 1271 GPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLE 1330
Query: 304 EYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESL 363
Y ++ G+ +S N + ++T VLIF ++ +
Sbjct: 1331 IY--IDG----FPGRAYCPRM-----MSMNKPAFQ-AIKTHSPTQPVLIFVSSRRQTRLT 1378
Query: 364 AQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYH 423
A+ L + FC G E + + + E I+ +E D+ L+ + FG+ H
Sbjct: 1379 AKDLIA-FC--GLEDNPRRFLYMDEEELEMIVSEVE---------DKSLKLALPFGIALH 1426
Query: 424 HAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPI------N 477
HAGLT ++R I E F + +++L+ATSTL+ GVN PA VI++ + I +
Sbjct: 1427 HAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMD 1486
Query: 478 ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI-ETKEKYMRAI 536
+ QM GRAGR D G + + + +K + + PV+S + + + ++ A
Sbjct: 1487 LTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGF-PVESYLHKVLDNHLNA- 1544
Query: 537 LEIIASNISCSKQELLLYTDCT 558
EI I C Q + + CT
Sbjct: 1545 -EIATGTIDCI-QGAMDFLTCT 1564
Score = 117 bits (281), Expect = 3e-24
Identities = 109/426 (25%), Positives = 206/426 (48%), Gaps = 55/426 (12%)
Query: 131 NLVYSAPTSAGKT---LVAEILTIKTVLERQK---------------KVIIILPFVSIVR 172
N++ APT AGKT L+A + TI +E K++ I P ++
Sbjct: 295 NMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAA 354
Query: 173 EKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNI-ED 230
E + + L+ G++ G Q + + + T EK + + + + + + E
Sbjct: 355 EVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEK 414
Query: 231 LGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNA 290
+ V++DE+H+L D+ RG ++E L+ + + + S +I+++G+SATLPN +A +L
Sbjct: 415 VRLVIIDEVHMLHDE-RGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGV 473
Query: 291 E------LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETI 344
F + FRP P+E++ + K + +SN +C D VLK+ I
Sbjct: 474 NRYKGLFYFSSAFRPCPIEQHFI--------GAKGSPKIVNSNIDEACFDKVLKL----I 521
Query: 345 KEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNS 404
+EG V+IF ++ + A+ L F G E ++ NS+H +L Q ++
Sbjct: 522 QEGHQVMIFVHSRKETINSAKKLREQFFHEG----EADLLD----NSQHEKYSLAQ-RDV 572
Query: 405 PVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKV 464
++ L++ + +G H+AG+ +R + E F G +++L T+TL+ GVNLPA V
Sbjct: 573 SKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAV 632
Query: 465 IIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGD 518
+I+ + ++ Q + +L Q+ GRAGR ++ + +I + +K + ++
Sbjct: 633 LIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTH-DKLSHYISVVTQ 691
Query: 519 LDPVKS 524
P++S
Sbjct: 692 QSPIES 697
>UniRef50_Q5D892 Cluster: Meiotic recombination protein MER3; n=3;
Magnoliophyta|Rep: Meiotic recombination protein MER3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1133
Score = 145 bits (352), Expect = 7e-33
Identities = 122/421 (28%), Positives = 205/421 (48%), Gaps = 56/421 (13%)
Query: 131 NLVYSAPTSAGKTLVAEILTI----KTVLERQK--------KVIIILPFVSIVREKMFYL 178
N++ SAPT +GKT++ E+ + K++ + K + I P ++V+EK+
Sbjct: 42 NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101
Query: 179 QNILSSSGIRVEGFMGSQSPAG--GMQNVHVAICTIEKANSMINRLLDNGNI---EDLGA 233
+S GI G +Q+ + + T EK +++ + +G + D+
Sbjct: 102 NQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIAL 161
Query: 234 VVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL------IQVIGMSATLPNLETLATW 287
V++DE+HLL D RG LE +++++K ++S +L ++++ +SAT+PN+E LA W
Sbjct: 162 VLIDEVHLLNDP-RGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEW 220
Query: 288 LNA-----ELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLE 342
L + F RP+ L Y ++ E + NY + I ++
Sbjct: 221 LKVPTAGIKRFGEEMRPVKLTTKVF---GYAAAKNDFLFEKRLQNY-------IYDILMQ 270
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK 402
K G S L+FC T+ + AQ L+ T G ++S+ E + EA
Sbjct: 271 YSK-GKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNP----FIKSREQLERLREA----- 320
Query: 403 NSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPAR 462
SP+ D+ +Q I GVGYH+ GL +R ++EG F +G I+V+ T+TL+ G+NLPA
Sbjct: 321 -SPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAH 379
Query: 463 KVIIRSPV-FQKQPINILSYK-----QMSGRAGRMGRDTKGESILICSEAEKKIGFNLMM 516
V+I+S F K+ + + Y QMSGRAGR D G I++ + NL+
Sbjct: 380 TVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439
Query: 517 G 517
G
Sbjct: 440 G 440
>UniRef50_A6UT61 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanococcus aeolicus Nankai-3
Length = 1265
Score = 145 bits (352), Expect = 7e-33
Identities = 116/372 (31%), Positives = 184/372 (49%), Gaps = 37/372 (9%)
Query: 106 ERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK-----K 160
E GI + Q L N +L N + PT++GKTL+ E+ I +L+ K K
Sbjct: 24 ENGIKSLRPPQQKVL-NNNLLDKNKNFLICIPTASGKTLIGEMAFINHLLDENKQPTGKK 82
Query: 161 VIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMIN 220
+ I+P ++ EK + G++V +G + + + I T EK +S++
Sbjct: 83 GLFIVPLKALANEKYDEFKEKYEKYGLKVALSIGDFDEKENLSSYDLIITTAEKLDSLMR 142
Query: 221 RLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPN 280
+D I+ + VVVDE+HL+GD RG LE++LTK+K + + IQ+IG+SAT+ N
Sbjct: 143 HRIDW--IDKVSVVVVDEIHLIGDDERGGTLEIILTKLKNLNN-----IQLIGLSATVGN 195
Query: 281 LETLATWLNAELFITTFRPIPLEEYCLVENK--YYDKNGKYILEAKSSNYGV-------- 330
E LA WLNA L I +RP+ L++ +NK Y D+N KS +
Sbjct: 196 PEELANWLNATLVIDDWRPVELKKGIFYKNKIEYIDENNSLDEITKSDFVALRSLRSLQK 255
Query: 331 SCNDS----VLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILR 386
NDS ++ + ++ I E S LIFC +K S A+ L+ K SE +
Sbjct: 256 PLNDSYKNDIMNLVVDCIDEDGSCLIFCNSKRGAVSEAKKLN---LKKYLSHSE-----K 307
Query: 387 SQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRV 446
+L + + + + + + P + L + I GV +HHAGLT ++R I+E F+ I+V
Sbjct: 308 HEL--QKLKDEVLSIFDPPTETCRALAECIEKGVAFHHAGLTYEQRKIVEEGFRKKLIKV 365
Query: 447 LVATSTLSSGVN 458
+ T TL N
Sbjct: 366 ICCTPTLCLNAN 377
Score = 61.7 bits (143), Expect = 1e-07
Identities = 86/357 (24%), Positives = 152/357 (42%), Gaps = 39/357 (10%)
Query: 454 SSGVNLPARKVIIRS-PVFQKQ---PINILSYKQMSGRAGRMGRDTKGESIL-ICSEAEK 508
S+G+NLP R+ I+R F + PI+ + +Q GRAGR G D GE I+ I + +
Sbjct: 897 SAGLNLPCRRAIVRDLKRFSGRGMAPISKMEIQQCIGRAGRPGLDPYGEGIVYIKNPNDV 956
Query: 509 KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILS 568
+ GF + G ++ + S + ++ IL +I++ ++ +L + T + Q L
Sbjct: 957 EKGFEYLTGKVEDIYSKLSNQKVLRTHILGLISTREVENEMDLKNFIKNTFYAHQYGSLQ 1016
Query: 569 QNL-ILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFCELQKAR 627
L +++ + LE+Y+ I + T LGK + P + L+K
Sbjct: 1017 GVLRNVKEVVDFLEDYDFIVA--------FTPTKLGKRVSELYIDPYSAKIIIDGLKKIN 1068
Query: 628 QCLVLETDLHLIYLVTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKC 687
+ L T+L L Y+ L++L S+T M+ + +E +I
Sbjct: 1069 KSSELNTNLEL-YM---------------LYVL----SMTTEMRPPLRVRNHEEEDLILE 1108
Query: 688 LRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFA 747
+ LN+ L + F TA D +NEV ++ ++ G L+ + A
Sbjct: 1109 MMDLNIDDYSWENL---ESFKTAKMFYDWINEVPEEDILKRYGIEPGILKYKVEQVKWMA 1165
Query: 748 GMVTAFCKQLGWKSMEI--LISQFQDRLHFGIQXXXXXXXXXXXXNGMRARTLFDAG 802
QL K+ +I +S+ + RL +G + +RAR L+DAG
Sbjct: 1166 YSAKEIFNQLNLKNEQIKDCLSELEIRLEYGAKKDIIELLKIKHVGRVRARKLYDAG 1222
>UniRef50_A7PM59 Cluster: Chromosome chr14 scaffold_21, whole genome
shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
chr14 scaffold_21, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1127
Score = 144 bits (350), Expect = 1e-32
Identities = 123/424 (29%), Positives = 202/424 (47%), Gaps = 49/424 (11%)
Query: 121 CNTKVLFDCANLVYSAPTSAGKTLVAEILTIKT----VLERQKKV-IIILPFVSIVREKM 175
C + N+V SAPT +GKT++ E+ ++ + E + + I I P ++V+EK+
Sbjct: 35 CFSACFLSDVNMVISAPTGSGKTVLFELCILRLLSRFISEEGRFIHIYIAPSKALVQEKL 94
Query: 176 FYLQNILSSSGIRVEGFMGSQS--PAGGMQNVHVAICTIEKANSMINRLLDNGNIE---D 230
L S GI G +Q + + T EK +++ + +G + D
Sbjct: 95 RDWNQKLGSLGINCLELTGDNEFYNIRNIQEADIIVTTPEKFDAVTRYRIKDGGLSFFSD 154
Query: 231 LGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL------IQVIGMSATLPNLETL 284
+ V++DE+HLL D RG LE ++++IK + ++ ++ + +SAT+PN+E L
Sbjct: 155 IALVLIDEVHLLNDP-RGAALEAIVSRIKMLARNPEMKLSSLSHVRFLAVSATIPNIEDL 213
Query: 285 ATWL-----NAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKI 339
A WL + F RP+ L Y ++ E + NY + I
Sbjct: 214 AEWLMVPAQGIKRFGEEMRPVKLTTKVF---GYTPAKNDFLFEKRLQNY-------IFDI 263
Query: 340 CLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALE 399
++ G S L+FC T+ + AQ +S G + F +RS+ E + EA
Sbjct: 264 LMQ-YSRGKSALVFCSTRKGAQEAAQRISQIAMNYG-HSNPF---IRSKEQEERLREA-- 316
Query: 400 QLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNL 459
L S D+ +Q I +GVGYH+ GL +R++IEG F G I++L T+TL+ G+NL
Sbjct: 317 SLSCS----DKQMQSYILYGVGYHNGGLCPKDRNLIEGLFLKGDIQILCTTNTLAHGINL 372
Query: 460 PARKVIIRSPV-FQKQPINILSYK-----QMSGRAGRMGRDTKGESILICSEAEKKIGFN 513
PA V+I+S F K+ + Y QM GRAGR + G +I++ + N
Sbjct: 373 PAHTVVIKSTQHFNKEKGLYMEYDRSMILQMCGRAGRPPFEDTGMAIIMTRRETVHLYEN 432
Query: 514 LMMG 517
L+ G
Sbjct: 433 LLNG 436
>UniRef50_Q2LTY3 Cluster: Helicase; n=1; Syntrophus aciditrophicus
SB|Rep: Helicase - Syntrophus aciditrophicus (strain SB)
Length = 882
Score = 144 bits (349), Expect = 2e-32
Identities = 139/480 (28%), Positives = 225/480 (46%), Gaps = 45/480 (9%)
Query: 90 KLKDWGLPIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEIL 149
+L + +P +I + + E+ Q + +VL D +L+ S+PT++GKT + EI
Sbjct: 5 ELSRYNIPEKIVEAWTTEMGEELLPVQERAIKRHQVL-DGKSLIISSPTTSGKTFIGEIA 63
Query: 150 TIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIR-VEGFMGSQSPAGGMQNVHVA 208
+K V+E+ KKVI ++P S+ EK + S GIR V + ++
Sbjct: 64 AVKGVMEK-KKVIYLVPLKSLAEEKYLDFRKKYESFGIRTVVSSRDHREHDRAIEAGEFG 122
Query: 209 ICTIEKANSMINRLLDNGNI-EDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDL 267
I I M ++ N + +++ VVVDEL +GD +RG LE+ LTKI +
Sbjct: 123 IAVIVY-EKMAQLMVKNPFLLKNIALVVVDELQEIGDPDRGPGLEITLTKIVSSPHRP-- 179
Query: 268 LIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSN 327
QVIG+SA L N + LA WL A+L RP+ L E L + ++ + LE S
Sbjct: 180 --QVIGLSAVLGNTDALARWLGADLLSFDKRPVELHEGVLYKGVFHYRTHN-TLEKNSEP 236
Query: 328 YGVSCNDSVLKICLETIK----EGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGM 383
+ ++ L + EG VL+F +K A LL+ + C
Sbjct: 237 LAEIDFEDPTEVLLANVAHLAGEGDQVLVFLPSKLDTMLFAGLLTER-VDLACAAG---- 291
Query: 384 ILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGA 443
L+ L L+ + L + L + V +HHA L+ DER +IE + G
Sbjct: 292 ----------TLDELALLEET--SLKEKLSSCLGKAVAFHHADLSRDERSVIEKYARKGE 339
Query: 444 IRVLVATSTLSSGVNLPARKVIIRSPVFQKQ--------PINILSYKQMSGRAGRM--GR 493
I+V+ T+TLS GVNLPA V + + ++ PI Y+ +SGRAGR+ GR
Sbjct: 340 IKVIFCTTTLSMGVNLPATTVFLHTQKWETDGRDHMILTPIGWAEYENISGRAGRLGFGR 399
Query: 494 DTKGESILICSE--AEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQEL 551
D G SI I + + N + G + + S ++ K ++ I+AS ++ +++E+
Sbjct: 400 DF-GRSITIAGNDYEYEMLWENYIDGQVGMLTSRLDGK-GMENHLVNIVASGVARNREEI 457
>UniRef50_O75643 Cluster: U5 small nuclear ribonucleoprotein 200 kDa
helicase; n=35; Eukaryota|Rep: U5 small nuclear
ribonucleoprotein 200 kDa helicase - Homo sapiens
(Human)
Length = 2136
Score = 144 bits (349), Expect = 2e-32
Identities = 145/479 (30%), Positives = 226/479 (47%), Gaps = 52/479 (10%)
Query: 96 LPIEISKKYEERGITEMFDW--QLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIK- 152
LP+E KY + G E F ++ L NL+ APT AGKT VA + ++
Sbjct: 462 LPVEKLPKYAQAGF-EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLRE 520
Query: 153 ---------TVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGM 202
T+ K+I I P S+V+E + L++ GI V G Q +
Sbjct: 521 IGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEI 580
Query: 203 QNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVT 262
+ +CT EK + + + + + + +++DE+HLL D +RG +LE L+ +
Sbjct: 581 SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNI 639
Query: 263 SKSDLLIQVIGMSATLPNLETLATWLNAE------LFITTFRPIPLEEYCLVENKYYDKN 316
+ +++IG+SATLPN E +AT+L + F +FRP+PLE+ Y
Sbjct: 640 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQ------TYVG-- 691
Query: 317 GKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGC 376
I E K+ N+ V + +E + VL+F ++ A+ + C
Sbjct: 692 ---ITEKKAIKRFQIMNEIVYEKIMEHAGKN-QVLVFVHSRKETGKTARAIRD-MC---L 743
Query: 377 EGSEFGMILRSQLNSEHILEA-LEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDII 435
E G+ LR S +L EQ KN L+ + +G HHAG+T +R ++
Sbjct: 744 EKDTLGLFLREGSASTEVLRTEAEQCKNLE------LKDLLPYGFAIHHAGMTRVDRTLV 797
Query: 436 EGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQKQ-----PINILSYKQMSGRAG 489
E F I+VLV+T+TL+ GVNLPA VII+ + V+ + + L QM GRAG
Sbjct: 798 EDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 857
Query: 490 RMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSK 548
R DTKGE ILI S E + +L+ L P++S + +K M EI+ N+ +K
Sbjct: 858 RPQYDTKGEGILITSHGELQYYLSLLNQQL-PIESQMVSKLPDM-LNAEIVLGNVQNAK 914
Score = 122 bits (294), Expect = 7e-26
Identities = 116/447 (25%), Positives = 210/447 (46%), Gaps = 48/447 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPFVSIVREKM--FY--LQNILSSS 185
N+ APT +GKT+ AE ++ +L+ + + + I P ++ + +Y Q+ L+
Sbjct: 1345 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404
Query: 186 GIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
+ + G + G N+ I T EK + + R N++++ VVDE+HL+G +
Sbjct: 1405 VVLLTGETSTDLKLLGKGNI--IISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1462
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPI 300
N G +LE++ ++++Y++S+ + I+++ +S++L N + +A WL F RP+
Sbjct: 1463 N-GPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPV 1521
Query: 301 PLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
PLE + ++ +L Y S K V++F ++ +
Sbjct: 1522 PLELH--IQGFNISHTQTRLLSMAKPVYHAITKHSPKK----------PVIVFVPSRKQT 1569
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGV 420
L + T C + F + ++ LE+L D L++T+ GV
Sbjct: 1570 R-LTAIDILTTCAADIQRQRF-----LHCTEKDLIPYLEKLS------DSTLKETLLNGV 1617
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN--- 477
GY H GL+ ER ++E F SGAI+V+VA+ +L G+N+ A VII + I+
Sbjct: 1618 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1677
Query: 478 ---ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIE-TKEKYM 533
I QM G A R +D +G +++C + KK F + + PV+S ++ +
Sbjct: 1678 DYPIYDVLQMVGHANRPLQDDEGRCVIMC-QGSKKDFFKKFLYEPLPVESHLDHCMHDHF 1736
Query: 534 RAILEIIASNISCSKQELLLYTDCTLL 560
A EI+ I +KQ+ + Y T L
Sbjct: 1737 NA--EIVTKTIE-NKQDAVDYLTWTFL 1760
>UniRef50_Q2URT5 Cluster: RNA helicase BRR2; n=33; Eukaryota|Rep:
RNA helicase BRR2 - Aspergillus oryzae
Length = 2210
Score = 143 bits (347), Expect = 3e-32
Identities = 128/450 (28%), Positives = 224/450 (49%), Gaps = 50/450 (11%)
Query: 121 CNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVS 169
C D N++ APT +GKT VA + ++ + + + K++ I P +
Sbjct: 540 CFPSAFHDDGNMLVCAPTGSGKTNVAMLTVLREIGKNRNPQTGEIMLDDFKIVFISPLKA 599
Query: 170 IVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNI 228
+V+E++ L L GI+V G Q + + + T EK + + + + I
Sbjct: 600 LVQEQVGNLGKRLEPYGIKVAELTGDRQLTKQQIAETQIIVTTPEKFDVVTRKASETSYI 659
Query: 229 EDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWL 288
+ + +++DE+HLL D +RG ++E ++++ ++ ++++G+SATLPN + ++L
Sbjct: 660 KLVRLIIIDEIHLLHD-DRGPVIESIVSRTIRKGEQTGEPVRIVGLSATLPNYRDVGSFL 718
Query: 289 NAEL------FITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICL 341
+ F ++RP PL +E+ V +K K I + K+ N C + V++
Sbjct: 719 RVDPVKGLFHFDGSYRPCPLKQEFIGVTDK------KAIKQLKTMND--ICYNKVIE--- 767
Query: 342 ETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQL 401
+ + +LIF ++ A+ + E G ILRS S IL E+
Sbjct: 768 QVGQRRNQMLIFVHSRKETAKTAKYIRDK----ALEMETIGQILRSDAASRAILA--EEA 821
Query: 402 KNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPA 461
++ D L+ + +G G HHAGL+L +RD ++ F G+I+VLV T+TL+ G+NLPA
Sbjct: 822 ESVD---DASLKDLLPYGFGIHHAGLSLADRDSVQALFADGSIQVLVCTATLAWGINLPA 878
Query: 462 RKVIIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLM 515
VII+ + V+ + ++ QM GRAGR DT GE I+I S+ E + +LM
Sbjct: 879 HTVIIKGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQYDTFGEGIIITSQTEIQYYLSLM 938
Query: 516 MGDLDPVKSCIETK-EKYMRAILEIIASNI 544
L P++S + +K M A E++ NI
Sbjct: 939 NQQL-PIESQLISKLADNMNA--EVVLGNI 965
Score = 97.1 bits (231), Expect = 3e-18
Identities = 111/474 (23%), Positives = 217/474 (45%), Gaps = 51/474 (10%)
Query: 97 PIEISKKYEERGITEMFDWQLACLCNT---KVLFDCANLVY-SAPTSAGKTLVAEILTIK 152
P++ K+ E + + DWQ T K LFD + V+ APT +GKT+ AE+ ++
Sbjct: 1365 PVKALKRDEYQNLYS--DWQYFNKIQTQTFKSLFDTNDNVFIGAPTGSGKTVCAELALLR 1422
Query: 153 T-VLERQKKVIIILPFVSIVREKMFYLQNILS--SSGIRVEGFMG-SQSPAGGMQNVHVA 208
E + + I PF +V ++ + LS S G + G + + ++ +
Sbjct: 1423 HWAKEDSGRAVYIAPFQELVDQRHADWEKRLSKLSGGKTIVKLTGETTADLKLLERADLV 1482
Query: 209 ICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL 268
+ T + + + + N++ + + DELH+LG GY+ E++++++ + + +
Sbjct: 1483 LATPTQWDVLSRQWQRRKNVQTVQLFIADELHMLGGYG-GYVYEVVVSRMHSIALQLENG 1541
Query: 269 IQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPLEEYCLVENKYYDKNGKYILEA 323
+++IG+S +L N + W+ A F RPIPLE + +++ +L
Sbjct: 1542 MRIIGLSVSLANARDIGEWIGANKHTIYNFSPHARPIPLELH--IQSFSIPHFPSLMLAM 1599
Query: 324 KSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGM 383
Y S+L++ + +IF + + S A L + C + F
Sbjct: 1600 ARPAY-----SSILQLSPDK-----PAIIFVPNRKQTRSTAMDLLAA-CATDDDEDRF-- 1646
Query: 384 ILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGA 443
LN++ + L L N +Q L +++S G+GY+H L+ ++ I+ F GA
Sbjct: 1647 -----LNAD--VNELAPLLNRV--QEQTLAESLSHGIGYYHEALSATDKRIVSHLFSIGA 1697
Query: 444 IRVLVATSTLSSGVNLPARKVIIR-SPVFQKQPINILSYK-----QMSGRAGRMGRDTKG 497
I+VL+A+ + +NL A VI+ + F+ + + Y QM G+A R G D G
Sbjct: 1698 IQVLLASRDVCWELNLTAHLVIVMGTQFFEGREHRYIDYPISEVLQMFGKASRPGEDKIG 1757
Query: 498 ESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR-AILEIIASNISCSKQE 550
+L+ +++ + + + PV+S ++ Y+ A + I++ + S Q+
Sbjct: 1758 RGVLMVPSVKREY-YKKFLNEALPVESHLQA---YLHDAFVTEISTKVVASTQD 1807
>UniRef50_Q5JGV6 Cluster: Putative ski2-type helicase (EC 3.6.1.-)
[Contains: Endonuclease PI- PkoHel (EC 3.1.-.-) (Pko Hel
intein)]; n=2; Thermococcus kodakarensis KOD1|Rep:
Putative ski2-type helicase (EC 3.6.1.-) [Contains:
Endonuclease PI- PkoHel (EC 3.1.-.-) (Pko Hel intein)] -
Pyrococcus kodakaraensis (Thermococcus kodakaraensis)
Length = 1125
Score = 143 bits (346), Expect = 4e-32
Identities = 109/361 (30%), Positives = 189/361 (52%), Gaps = 38/361 (10%)
Query: 96 LPIE--ISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKT 153
LPI+ I + +ERGI E++ Q L + VL + NLV + PT++GKTLV+EI+ +
Sbjct: 6 LPIDERIKRVIKERGIEELYPPQAEAL-KSGVL-EGKNLVLAIPTASGKTLVSEIVMVNK 63
Query: 154 VLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTI 212
+L K + ++P ++ EK + G+RV G S + + + T
Sbjct: 64 LLSEGGKAVYLVPLKALAEEKYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATA 122
Query: 213 EKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVI 272
EK +S++ I+D+ VV DE+HL+G +RG LE++LT ++ K+ Q++
Sbjct: 123 EKFDSLLRH--GASWIKDVKLVVADEVHLIGSYDRGATLEMILT---HMLGKA----QIL 173
Query: 273 GMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSC 332
+SAT+ N E LA WL+A L ++ +RP+ L + + + ++GK ++ N+
Sbjct: 174 ALSATVGNAEELAEWLDASLVVSDWRPVELRKGVFHLGQLFWEDGK--IDHYPENWE--- 228
Query: 333 NDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSE 392
+ L+ +K+G L+F T+ E A LSS K L ++ +
Sbjct: 229 -----SLVLDAVKKGKQALVFVNTRRSAEKEAISLSSKVSK-----------LLTKPETR 272
Query: 393 HILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATST 452
+ E + ++++P + L++ + GV +HHAGL+ ER +IE AF++G I+V+ AT T
Sbjct: 273 RLEELISSIEDNPT--TEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPT 330
Query: 453 L 453
L
Sbjct: 331 L 331
Score = 48.8 bits (111), Expect = 0.001
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 454 SSGVNLPARKVIIRSPV----FQKQPINILSYKQMSGRAGRMGRDTKGESILIC-SEAEK 508
S+G+NLPA +VIIR F I +L +QM GRAGR D GE+I++ +E K
Sbjct: 735 SAGINLPAFRVIIRDTKRYANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 509 KIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILS 568
K+ + G + + S + ++ + +L +I + +EL+ + T + Q+ S
Sbjct: 795 KLIDRYIHGKPEKLFSMLANEQAFRSQVLALITNFGVEDFRELVDFLSRTFYAHQRGDTS 854
Query: 569 QNLILEDTLKELENYELIRIQ--NNHSENHYVATALGK 604
LE K++ Y LI + + EN ++A G+
Sbjct: 855 S---LEYKAKDIV-YFLIENEFIDMDVENRFIALPFGR 888
>UniRef50_Q4WA08 Cluster: DEAD/DEAH box helicase, putative; n=18;
Ascomycota|Rep: DEAD/DEAH box helicase, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 2043
Score = 142 bits (345), Expect = 5e-32
Identities = 124/443 (27%), Positives = 228/443 (51%), Gaps = 42/443 (9%)
Query: 130 ANLVYSAPTSAGKTLVAEILTIKTVLERQ-KKVIIILPFVSIVREK-MFYLQNILSSSGI 187
AN++ +PT +GKT+ E+ E+ KV+ I P ++VRE+ M + + + + G+
Sbjct: 1199 ANVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLAAPMGL 1258
Query: 188 RVEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQN 246
++ G +P +++ + I T EK + + + + V++DE+HLLG +
Sbjct: 1259 KLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGG-D 1317
Query: 247 RGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTF----RPIPL 302
RG ILE++++++ Y+ S+S ++++GMS N LA WL + + F RP+PL
Sbjct: 1318 RGPILEIIVSRMNYIASQSKGSVRLMGMSTACANATDLANWLGVKEGLFNFRHSVRPVPL 1377
Query: 303 EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCES 362
E Y + + ++ G + +S N + L I + ++ V++F ++ +
Sbjct: 1378 EIYI---DGFPEQRG-FCPLMQSMN-----RPTFLAIKNHSPEK--PVIVFVASRRQTRL 1426
Query: 363 LAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGY 422
A+ L + +C G E + + +++ E + L ++K D+ L++ +SFG+G
Sbjct: 1427 TAKDLIN-YC--GMEDNPRRFV---RMSEEDLQLNLARVK------DEALREALSFGIGL 1474
Query: 423 HHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPI------ 476
HHAGL +R + E F + I++LVATSTL+ GVNLPA V+++ + I
Sbjct: 1475 HHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQYFDAKIEGYKDM 1534
Query: 477 NILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI-ETKEKYMRA 535
++ QM GRAGR D+ G + + E+ KK + + PV+S + + + ++ A
Sbjct: 1535 DLTDVLQMLGRAGRPQFDSSGIARIFTQES-KKAFYKHFLHTGFPVESTLHKVLDNHLGA 1593
Query: 536 ILEIIASNISCSKQELLLYTDCT 558
EI A I+ +KQ+ L Y T
Sbjct: 1594 --EISAGTIA-TKQDALDYLTWT 1613
Score = 120 bits (290), Expect = 2e-25
Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 54/411 (13%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV--------LERQK-----------KVIIILPFVSIV 171
N++ APT AGKT A + + T+ +E+ K++ + P ++
Sbjct: 339 NMLICAPTGAGKTDAAMLTILNTIGKNTVPNPIEQPDAIEFAVQVDDFKIVYVAPMKALA 398
Query: 172 REKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLL-DNGNIE 229
E L L+ GIRV G Q + + + T EK + + + D ++
Sbjct: 399 AEVTEKLGKRLAWLGIRVRELTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQ 458
Query: 230 DLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLN 289
+ +++DE+H+L D+ RG ++E L+ + + + LI+++G+SATLPN +A +L
Sbjct: 459 KVRLLIIDEVHMLHDE-RGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVDVAEFLK 517
Query: 290 AE------LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLET 343
F +FRP+PLE++ + GK + N + + V E
Sbjct: 518 VNKMAGLFFFDASFRPVPLEQH------FIGVKGKPGSKQSRENLDIVAFEKVR----EM 567
Query: 344 IKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKN 403
++ G V++F ++ A++L + GCE L S E+ AL +K+
Sbjct: 568 LERGHQVMVFVHSRKDTVLTARMLRQMAVENGCED------LFSCHEHENYSNALRDMKH 621
Query: 404 SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK 463
+ + L+ + G G HHAG+T +R+++E F G I+VL T+TL+ GVNLPA
Sbjct: 622 ARA---RELRDLFASGFGTHHAGMTRSDRNLMERMFSEGLIKVLCCTATLAWGVNLPAAA 678
Query: 464 VIIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEK 508
V+I+ + ++ Q + IL Q+ GRAGR G IC+ +K
Sbjct: 679 VVIKGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTGIG-FICTTHDK 728
>UniRef50_UPI000069FCAD Cluster: DNA polymerase nu (EC 2.7.7.7).; n=1;
Xenopus tropicalis|Rep: DNA polymerase nu (EC 2.7.7.7). -
Xenopus tropicalis
Length = 308
Score = 142 bits (343), Expect = 9e-32
Identities = 74/198 (37%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 1208 TMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRL 1267
T N+Q +P+ ++ + + E+I N R +F AA G ++AD+ Q+E+RL
Sbjct: 102 TAETVNIQGIPK-LAVQIAKPQYIQGKDKEMITINPRAMFIAAKGFTFLAADFSQIELRL 160
Query: 1268 LTHFSEDSALTRIMKS--DVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNK 1325
+ HFS D L ++ + +DVF +A+ W DV V R++AK+ Y ++YG G +
Sbjct: 161 MAHFSSDPELLKLFEKPESMDVFTKLASQWKDVDPENVTQADREQAKRTVYSVLYGAGKE 220
Query: 1326 TLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSH 1385
LSQ+L ++ EA+ F++SF + Y + FT+ +I++C+ GFV +L GR+R LP IT+
Sbjct: 221 RLSQYLGITPKEANAFIESFLKKY-KLSEFTQQIIQQCQNTGFVVSLMGRKRPLPHITAT 279
Query: 1386 ITSRRNTAERQAVNTMIQ 1403
S R AERQAVN +IQ
Sbjct: 280 DFSLRTQAERQAVNFVIQ 297
>UniRef50_UPI000049A24D Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 1804
Score = 141 bits (341), Expect = 2e-31
Identities = 133/498 (26%), Positives = 234/498 (46%), Gaps = 50/498 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-----KVIIILPFVSIVREKMFYLQNILSSS 185
N++ APT GKTL A + ++ V Q K++ I P ++ E + L
Sbjct: 196 NMLVCAPTGCGKTLTALLCMLREVKVHQHDMEHLKIVYISPLKALATEMTTTFKKHLGCF 255
Query: 186 GIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGD 244
+RVE G + P + + HV + T EK + ++ R D + D+ ++VDE+HLL D
Sbjct: 256 KMRVEEVTGDTNIPKAVIASTHVIVATPEKFD-VLTRKQDAEFVNDIQLLIVDEVHLL-D 313
Query: 245 QNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRP 299
++RG ++E ++ + + I+V+G+SATLPN + + ++ A+ F ++R
Sbjct: 314 EDRGAVIETIVARTLRMVESQQRPIRVVGLSATLPNYQDVGEFIRAKPENIFHFDMSYRA 373
Query: 300 IPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNR 359
+P+ +V + +N K + D +K G V++F T+
Sbjct: 374 VPMSTKFIVLPEDEKEN-------KGHQFTHHATDLAYDEAEIVVKRGKQVIVFVHTRRE 426
Query: 360 CESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFG 419
AQ + G G +++L+ G D +++ + G
Sbjct: 427 TVLTAQRFIKRMKEKGTTEYFTGN------KGREFATRIKKLQ----GKD--IKELLEMG 474
Query: 420 VGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQ-----K 473
+G H+AG+ +R IE AF++G+++VLV+T+TL+ GVNLPA VIIR + VF
Sbjct: 475 IGVHNAGMFRSDRTFIEDAFRNGSLKVLVSTATLAWGVNLPAHTVIIRGTEVFNSDKGCS 534
Query: 474 QPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI-ETKEKY 532
I+IL QM GRAGR D +G I+I ++ E + ++G++ +KS + +
Sbjct: 535 DKISILDVLQMFGRAGRPQYDNEGAGIII-TDKEGLKKYMAILGNMGKIKSTLMNGLSDH 593
Query: 533 MRAILEIIASNISCSKQEL----LLYTDCTLLSAQKEILSQNL--ILEDTLKELENYELI 586
+ A EI++ ++ ++ L Y L + I S +L ++ K LE ++I
Sbjct: 594 LNA--EIVSGTVTNLEEALQWFQYTYLYVCLKRSPGGITSDDLNSLIGGAAKSLEKLQMI 651
Query: 587 RIQNNHSENHYVATALGK 604
I N + T LG+
Sbjct: 652 TI--NDETITFSPTLLGR 667
Score = 87.8 bits (208), Expect = 2e-15
Identities = 45/179 (25%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLER-QKKVIIILPFVSIVREKMFYLQNILSSSGIRV 189
N++ APT +GKT+ AE+ +K + KKV+ I P ++V+EK+ ++ L + G +
Sbjct: 1023 NVIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKLSDWKDKLKTLGKNI 1082
Query: 190 EGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
G +P + + + + T EK + + ++ +G +++DE+HLLG++ RG
Sbjct: 1083 VELTGDFTPDSAAIAKADIILTTPEKWDGITRLWTKKSYVQKVGLIILDEVHLLGEE-RG 1141
Query: 249 YILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPL 302
++E ++T+ K + K + ++ ++ + N++ + W+ + F ++ RP+PL
Sbjct: 1142 PVIEAIVTRTKQINKKLCIQTRICALTTAIANVDDMMNWIGVDKDSVFNFHSSLRPVPL 1200
Score = 79.0 bits (186), Expect = 9e-13
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
D IL++ + +G+G HHAGL +R+I E FKS I++L+ T+TL+ GVNLPA VII+
Sbjct: 1283 DGILKECLLYGIGMHHAGLNDHDREITEKLFKSNKIQILITTATLAWGVNLPAHLVIIKG 1342
Query: 469 PVF------QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ Q + + QM GRAGR D +G ++++ E +K + + P+
Sbjct: 1343 TEYFDGKKHQFVDMPLTDVLQMMGRAGRPQYDNEGVAVILTYEPKKDF-LRKFLFEPFPL 1401
Query: 523 KSCIET 528
+S ET
Sbjct: 1402 ESYFET 1407
>UniRef50_Q4T4J7 Cluster: Chromosome undetermined SCAF9604, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9604,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1560
Score = 141 bits (341), Expect = 2e-31
Identities = 139/476 (29%), Positives = 224/476 (47%), Gaps = 45/476 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNI--LSSSGIR 188
NL+ APT AGKT VA + +L K I + +++ K+ Y+ + L+ +
Sbjct: 439 NLLICAPTGAGKTNVA----LMAMLREIGKHINMDGTINVDDFKIIYIAPMRSLAQEMVG 494
Query: 189 VEGFMGSQSPAGGMQNV-HVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G N + +CT EK + + + + + + +++DE+HLL D +R
Sbjct: 495 LSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERTYTQLVRLIIIDEIHLLHD-DR 553
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE------LFITTFRPIP 301
G +LE L+ + + ++++G+SATLPN E +AT L + F +FRP+P
Sbjct: 554 GPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVATCLRVDPAKGLFYFDNSFRPVP 613
Query: 302 LEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
LE+ Y I E K+ N+ V + +E + VL+F ++
Sbjct: 614 LEQ------TYVG-----ITEKKAIKRFQIMNEIVYEKIMEHAGKN-QVLVFVHSRKETG 661
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEA-LEQLKNSPVGLDQILQKTISFGV 420
A+ + C E G+ LR S +L EQ KN L+ + +G
Sbjct: 662 KTARAIRD-MC---LEKDTLGLFLREGSASTEVLRTEAEQCKNLE------LKDLLPYGF 711
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQKQ----- 474
HHAG+T +R ++E F I+VLV+T+TL+ GVNLPA VII+ + V+ +
Sbjct: 712 AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT 771
Query: 475 PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR 534
+ L QM GRAGR DTKGE ILI S AE + +L+ L P++S + +K M
Sbjct: 772 ELGALDILQMLGRAGRPQYDTKGEGILITSHAELQYYLSLLNQQL-PIESQMVSKLPDM- 829
Query: 535 AILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQN 590
EI+ N+ SK L I + N +L+ TL E+E + + + +
Sbjct: 830 LNAEIVLGNVQNSKVTDLGRIASHFYVTHDSIQTYNQLLKPTLSEIELFRVFSLSS 885
Score = 38.7 bits (86), Expect = 1.2
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 442 GAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN------ILSYKQMSGRAGRMGRDT 495
GA++V+VA+ +L G+++ A VI+ + I+ I QM GRA R +D
Sbjct: 1222 GAVQVVVASRSLCWGISISAHLVIVMDTQYYNGKIHSYVDYPIYDILQMVGRANRPMQDD 1281
Query: 496 KGESILICSEAEK 508
+G +++C ++K
Sbjct: 1282 EGRCVIMCQGSKK 1294
>UniRef50_UPI0000499F5C Cluster: U5 snRNP-specific 200kd protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: U5
snRNP-specific 200kd protein - Entamoeba histolytica
HM-1:IMSS
Length = 1799
Score = 140 bits (339), Expect = 3e-31
Identities = 123/422 (29%), Positives = 214/422 (50%), Gaps = 56/422 (13%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK------KVIIILPFVSIVREKMFYLQNILSS 184
N++ APT AGKT VA +LTI +++ K K+I I P S+V+E + LQ L +
Sbjct: 468 NVLVCAPTGAGKTTVA-LLTILHEVKKAKQTHEQFKIIYIAPMKSLVQEIVGTLQGKLEN 526
Query: 185 SGIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRL------LDNGNIEDLGAVVVD 237
G++V G S ++ V + T EK + + ++ +G E L +++D
Sbjct: 527 LGMKVAEMSGDSSLTKKELEETDVIVATPEKIDVITRKIGGLGSGCGHGIFEYLKVMIID 586
Query: 238 ELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----L 292
E+HLL D RG +LE L+ +IK + I+++G+SATLPN + +LN + +
Sbjct: 587 EVHLLHD-TRGPVLEALVARIKLFMGSNSKYIRLVGLSATLPNCGDVGIFLNCKKENVFV 645
Query: 293 FITTFRPIPLEE-YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGC--- 348
F + +RP+PL++ + V +K K + + + N ++ + +KE
Sbjct: 646 FGSEYRPVPLQQTFFGVADK------KPLKQVQIMN----------RLTFQKVKESAGKQ 689
Query: 349 SVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGL 408
VLIF ++ A+ + + C L+++ S+ +L L + K
Sbjct: 690 QVLIFVHSRKDTIETAKYIKEMALQENC----LHTFLQNRRASQEVL--LSEAKKFD--- 740
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
++ L++ I G+G HHAG+ ++R +IE + ++VLV+T+TL+ GVNLPA VII+
Sbjct: 741 NEELKELIGVGIGIHHAGMNKEDRRLIEDLYADNHLQVLVSTATLAWGVNLPAHTVIIKG 800
Query: 469 ------PVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
P + + ++ + QM GRAGR D +G I+I ++ E +L+ L P+
Sbjct: 801 TQIYSPPTGRWEELSPMDVMQMIGRAGRPQFDKEGTGIIITTQREMFFYMSLLSQQL-PI 859
Query: 523 KS 524
+S
Sbjct: 860 ES 861
Score = 53.2 bits (122), Expect = 5e-05
Identities = 38/161 (23%), Positives = 83/161 (51%), Gaps = 10/161 (6%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKK-VIIILPFVSIVREKMFYLQNILSSSGIRV 189
+L ++ + +GKT++AE+ +K + E K I ++PF + YL+ + + I V
Sbjct: 1315 SLYIASHSGSGKTVIAEMGLLKHIQEHNGKGAIYVIPFDE--ERDLLYLE--MKNQSISV 1370
Query: 190 EGFM-GSQSPAGGMQNVHVAICTIEKANSMINRLLDNGN-IEDLGAVVVDELHLLGDQNR 247
E ++ ++NV V + +I + N N I+ +G +++D+L +G+
Sbjct: 1371 EMMKTDNKDIEEQLKNVQVILASIHNFEKYLRDWKRNENTIKSIGIIILDDLQRVGEDVE 1430
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWL 288
E+L+++IK + + I++IG+S + + +++ WL
Sbjct: 1431 ---YEMLISRIKIIQKEYQNNIRIIGLSLPISDSKSMREWL 1468
>UniRef50_Q4QGA4 Cluster: RNA helicase, putative; n=7;
Trypanosomatidae|Rep: RNA helicase, putative - Leishmania
major
Length = 1985
Score = 140 bits (339), Expect = 3e-31
Identities = 123/446 (27%), Positives = 216/446 (48%), Gaps = 46/446 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQ--KKVIIILPFVSIVREKMFYLQNILSSSGIR 188
N+ APT +GKT+ AE+ ++ V E+ KKV+ I P ++V+E++ + + G
Sbjct: 1166 NVFLGAPTGSGKTIAAEMAILR-VFEQYPGKKVVYIAPLKALVKERLRDWKARMMLVGRS 1224
Query: 189 VEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
V G +P + + T EK + + + + VV DE+H+LG +R
Sbjct: 1225 VVELSGDATPDISALAKADILCTTPEKWDGISRNWQVRSYVTAVKLVVFDEVHMLGT-DR 1283
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL------FITTFRPIP 301
G ILE+++++++Y+ I+++G+S + N L++WL E F + RP+P
Sbjct: 1284 GPILEVIVSRMRYIGWNRKAPIRLVGLSTAVSNPGDLSSWLGVEKKWAVFNFDPSVRPVP 1343
Query: 302 LEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
+ + Y+ KN Y + N + IC ++ + V++F ++ +
Sbjct: 1344 MTVHIA---GYHGKN--YCPRMATMN-----KPTYNAICEKSPTQ--PVIVFVSSRRQTR 1391
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQ-ILQKTISFGV 420
A L G +L ++ + ++Q++ LD ++ + FGV
Sbjct: 1392 LTAMAL-------------IGFLLMEGNTAKWVHMDVDQVQKYTSKLDDPYVKHCLQFGV 1438
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN--- 477
G HHAGL +R I+E AF S I+VLVATSTL+ GVN PA V+++ + N
Sbjct: 1439 GIHHAGLLEGDRTIVEEAFLSNRIQVLVATSTLAWGVNFPAHMVVVKGTEYYDAKTNSYV 1498
Query: 478 ---ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMR 534
I QM GRAGR DT+G + ++C E +K + + D PV+S + K+ ++
Sbjct: 1499 DFPITDVLQMIGRAGRPQFDTEGVAQVLCHEPKKGF-YRKFLYDPFPVESALH-KQLHVH 1556
Query: 535 AILEIIASNISCSKQELLLYTDCTLL 560
EI++ I+ ++Q+ + Y T L
Sbjct: 1557 INAEIVSGTIN-TRQDAVNYLTWTYL 1581
Score = 135 bits (326), Expect = 1e-29
Identities = 116/421 (27%), Positives = 205/421 (48%), Gaps = 42/421 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKT--------VLERQKKVIIILPFVSIVREKMFYLQNIL 182
N++ APT AGKT+ ++ ++ VL+R K+I + P ++ +E + L
Sbjct: 297 NMLVCAPTGAGKTVCGLLVMLRCISEHFEGGVLDRDFKIIFVAPMKALAQEMVENFSRRL 356
Query: 183 SSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHL 241
+ I+V G Q + V + T EK + + + + + + +++DE+HL
Sbjct: 357 APFMIKVRELTGDMQLTKRELAETQVIVTTPEKWDVITRKQSNEELVSQVRLIIMDEIHL 416
Query: 242 LGDQNRGYILELLLTK-IKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL------FI 294
L ++ RG +LE L+ + +++ + ++++G+SATLPN + +A +L A+L F
Sbjct: 417 LNEE-RGPVLEALVARTLRHGELNPEQRVRLVGLSATLPNYKDVANFLQADLREGLKVFG 475
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
+RP+PLE+ + + +G A N + + ++ ++EG V++F
Sbjct: 476 PEYRPVPLEQTFI---GLQNTSG-----APKRNKEFELDRLAYEEVVKNVREGHQVMVFV 527
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
++ + LA+ + G E + + S A+E+ + G D L
Sbjct: 528 HSRKQTVGLAKYFIEESTR---RGEEHLFQYKGVMPS-----AIEKKGRTLQGRD--LAS 577
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQK 473
+ G G HHAGL +R EG F+ G +RVL TSTL+ GVNLPA V+IR + ++
Sbjct: 578 LFAAGFGAHHAGLVRYDRTSTEGFFRDGYLRVLCCTSTLAWGVNLPAHTVVIRGTQMYDP 637
Query: 474 Q-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIET 528
+ I++L Q+ GRAGR DT G I+I E E L+ L P++S ++
Sbjct: 638 KRGGLVSISVLDVMQIFGRAGRPQFDTSGHGIIISDEKEVSHFLRLIAHAL-PIESQMQG 696
Query: 529 K 529
K
Sbjct: 697 K 697
>UniRef50_Q118S8 Cluster: DNA polymerase I; n=2; Cyanobacteria|Rep:
DNA polymerase I - Trichodesmium erythraeum (strain
IMS101)
Length = 1045
Score = 140 bits (338), Expect = 3e-31
Identities = 95/311 (30%), Positives = 165/311 (53%), Gaps = 39/311 (12%)
Query: 1187 IYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRN 1245
+ S+ R+ ++++ T T TGR++ EPNLQN+P I ++ S ++ R
Sbjct: 751 VRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIP----IGTKF-------SRQI-----RQ 794
Query: 1246 VFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDD 1305
F ++V+ADY Q+E+R+L H S++ L K++ DV A + + E+
Sbjct: 795 AFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLFE--KEEISS 852
Query: 1306 DLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKR 1365
+ R+ K + +G+IYGMG + L++ + ++ E+ F++ +++ Y + + + + ++
Sbjct: 853 EERRVGKTINFGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAYLEKLKKQAIA 912
Query: 1366 QGFVETLSGRRRY-------LPDITSHITSRRNTAE-----------RQAVNTMIQGSAA 1407
+G+VET+ GRRRY + D+ N E R A N+ IQGS+A
Sbjct: 913 KGYVETILGRRRYFELESKTIRDLKDKEPEEINLQELKFSQNDAQILRSAANSPIQGSSA 972
Query: 1408 DIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVP 1467
DI K AM + + ++ K L+LQ+HDEL++EV + + L+KS ME+ V LKVP
Sbjct: 973 DIIKIAMIRLNKILTNYQTK--LLLQVHDELVFEVPPSELEKMQQLIKSTMENAVTLKVP 1030
Query: 1468 LPVKLKCGYTW 1478
L V + G W
Sbjct: 1031 LIVDIHGGKNW 1041
>UniRef50_Q9VF56 Cluster: CG5205-PA; n=5; Endopterygota|Rep: CG5205-PA
- Drosophila melanogaster (Fruit fly)
Length = 2183
Score = 140 bits (338), Expect = 3e-31
Identities = 124/444 (27%), Positives = 219/444 (49%), Gaps = 45/444 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPFVSIVREKMFYLQNIL--SSSGI 187
N++ APT +GKT+VAEI + + + K KV+ I P ++V+E++ + SS G+
Sbjct: 1354 NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGL 1413
Query: 188 RVEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQN 246
+V G +P ++ + + T EK + + ++ + +V+DE+HLLG+ +
Sbjct: 1414 KVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGE-D 1472
Query: 247 RGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIP 301
RG ++E+++++ +++S + I+++G+S L N + LA WL F + RP+P
Sbjct: 1473 RGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVP 1532
Query: 302 LEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCE 361
L+ + N + GK+ + + N + + T C I ++ R
Sbjct: 1533 LQVHI---NGF---PGKHYCPRMA-----TMNRPTFQ-AIRTYSP-CEPTIVFVSSRRQT 1579
Query: 362 SLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVG 421
L L TF +F I ++ E IL+ + +Q L+ ++FG+G
Sbjct: 1580 RLTALDLITFVAGESNPKQFLHIPEDEI--ELILQNIR---------EQNLKFCLAFGIG 1628
Query: 422 YHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN---- 477
HHAGL +R +E F + I++LVAT+TL+ GVNLPA V+I+ + +
Sbjct: 1629 LHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVD 1688
Query: 478 --ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVK-SCIETKEKYMR 534
I QM GRAGR D +G ++++ + EKK + + D PV+ S + +++
Sbjct: 1689 MPITDVLQMMGRAGRPQFDNEGVAVVLVHD-EKKNFYKKFLYDPFPVESSLLGVLPEHIN 1747
Query: 535 AILEIIASNISCSKQELLLYTDCT 558
A EI+A + SKQ L Y T
Sbjct: 1748 A--EIVAGTVQ-SKQAALDYLTWT 1768
Score = 118 bits (283), Expect = 2e-24
Identities = 111/397 (27%), Positives = 185/397 (46%), Gaps = 44/397 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV---LER------QKKVIIILPFVSIVREKMFYLQNI 181
N++ APT AGKT VA + + T+ LE+ + K++ I P ++ E +
Sbjct: 504 NMLVCAPTGAGKTNVAMLSIVHTIRCHLEQGVINRDEFKIVYIAPMKALAAEMVDNFSKR 563
Query: 182 LSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLL-DNGNIEDLGAVVVDEL 239
L S I V G Q M + + T EK + + + D I + +++DE+
Sbjct: 564 LKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALISLVELLIIDEV 623
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE------LF 293
HLL + RG ++E L+ + + S +I+++G+SATLPN +A +L F
Sbjct: 624 HLLHGE-RGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRVNPMKGLFYF 682
Query: 294 ITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIF 353
+ FRP+PL D N I K + + C+E ++EG +++F
Sbjct: 683 DSRFRPVPL-----------DTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEGHQIMVF 731
Query: 354 CMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQ 413
+N A ++ ++ + + + L ++ H L A ++ S ++ L
Sbjct: 732 VHARNATVRTANVIR----ELAQQNNTSALFLPKD-SAAHGL-ATRSIQRSR---NKQLV 782
Query: 414 KTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQ 472
+ S G+ HHAG+ +R ++E F G I VLV T+TL+ GVNLPA VIIR + ++
Sbjct: 783 ELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYD 842
Query: 473 KQ-----PINILSYKQMSGRAGRMGRDTKGESILICS 504
+ + IL Q+ GRAGR D G +I S
Sbjct: 843 AKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITS 879
>UniRef50_Q675T1 Cluster: Putative helicase; n=1; Oikopleura
dioica|Rep: Putative helicase - Oikopleura dioica
(Tunicate)
Length = 2017
Score = 140 bits (338), Expect = 3e-31
Identities = 124/431 (28%), Positives = 206/431 (47%), Gaps = 55/431 (12%)
Query: 125 VLFDCA-----NLVYSAPTSAGKTLVAEILTIKTVLE----------RQKKVIIILPFVS 169
++FD A NL+ +APT AGKT VA + + + + R K++ + P +
Sbjct: 331 IVFDAASNTNENLLVAAPTGAGKTNVAMLCVLNVIRQHINEVGTLKLRDFKIVYVAPMKA 390
Query: 170 IVREKMFYLQNILSSSGIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMIN-RLLDNGN 227
+ E Q+ L GI+V + G + ++ + + T EK + + R+ D
Sbjct: 391 LAAEVTEKFQSKLRCLGIKVREYTGDMNLTKKEIEETQMLVTTPEKWDVLTRKRIQDVEL 450
Query: 228 IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATW 287
+ + +++DE+HLL D +RG +LE L+ + + + S +I+++G+SATLPN +A +
Sbjct: 451 MSKIKLMILDEIHLLQD-SRGAVLEALVARTLRLVNTSQQMIRIVGLSATLPNYVDVAKF 509
Query: 288 LNAEL------FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICL 341
L L F FRP+PL+ +Y + + + V N KI L
Sbjct: 510 LRVNLDKGLFFFDGRFRPVPLD------TRYIGVKAR---GGRFAQLNVM-NQQAYKIAL 559
Query: 342 ETIKEGCSVLIFC----MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEA 397
+ I+ G V+IF T CESL + S EG+ + H E
Sbjct: 560 QHIRNGKQVMIFVHSRGATAKTCESLMEQASQ-------EGTRREFEPDPDHHRYH--EL 610
Query: 398 LEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGV 457
++KN+ + + K +G G HHAG+ +R + E F+ G IRVL TSTL+ GV
Sbjct: 611 SRRVKNAK---SREVSKFFQYGFGCHHAGMIRSDRSLTEKLFEQGLIRVLCCTSTLAWGV 667
Query: 458 NLPARKVIIRSPVF----QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFN 513
NLPA V+I+ Q +++L +Q+ GRAGR D GE+ +I + +K + +
Sbjct: 668 NLPAYAVVIKGTEIYVNGQYIDLSVLDVQQIFGRAGRPQFDNSGEATIITTH-DKLVHYV 726
Query: 514 LMMGDLDPVKS 524
+M P++S
Sbjct: 727 SLMIRAAPIES 737
Score = 122 bits (295), Expect = 6e-26
Identities = 126/466 (27%), Positives = 226/466 (48%), Gaps = 46/466 (9%)
Query: 130 ANLVYSAPTSAGKTLVAEILTIKTVLERQK-KVIIILPFVSIVREKMF-YLQNILSSSGI 187
+N + APT +GKT AE+ +K + K + I P ++V+E+M + + + G
Sbjct: 1195 SNALVGAPTGSGKTACAELSMLKVFRDYPNGKCVYIAPLKALVKERMDDWSKKLGGKLGK 1254
Query: 188 RVEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQN 246
++ G +P + + + I T EK + + + D+ +V+DE+H+LG+ +
Sbjct: 1255 KLVEMTGDIAPDQKAIVSADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGE-D 1313
Query: 247 RGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELF-ITTF----RPIP 301
RG +LE ++T+ ++++++ ++++G+S L N LA WL + F + F RP+P
Sbjct: 1314 RGPVLESIVTRTNFISAQTKANLRIVGLSTALANARDLADWLGIKNFGLYNFKPSVRPVP 1373
Query: 302 LEEYCL-VENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
+ + K+Y + L K + Y S K V+IF ++ +
Sbjct: 1374 MRIHVQGFPGKHYCP--RMALMNKPA-YQAIQEHSPTK----------PVIIFVSSRRQT 1420
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEAL-EQLKNSPVGLDQILQKTISFG 419
A L S G E + + +L E L+AL +++K+ V L L+ FG
Sbjct: 1421 RLTALSLISLLA--GNENPK--AWINYELIHELELDALIDRVKD--VNLRHTLE----FG 1470
Query: 420 VGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF--QKQ--- 474
+G HHAGL +R I+E F+ I++L+AT+TL+ GVNLPA VI++ KQ
Sbjct: 1471 IGMHHAGLVESDRRIVENLFRDRKIQLLIATATLAWGVNLPAHMVIVKGTEHFDGKQGKF 1530
Query: 475 -PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS-CIETKEKY 532
+ I QM GRAGR D + + + + +K + + + PV+S + +
Sbjct: 1531 VDVGITDVLQMVGRAGRPQYDNEAVACVFIHDIKKNY-YKKFIYEPFPVESNLLGVLPDH 1589
Query: 533 MRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLK 578
+ A EI+A + SKQ+ + Y T ++ +++ N DTL+
Sbjct: 1590 LNA--EIVAGTVK-SKQDAMNYLTWTYF-FRRLLMNPNYYQLDTLE 1631
>UniRef50_A6QZE8 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 1597
Score = 140 bits (338), Expect = 3e-31
Identities = 127/435 (29%), Positives = 214/435 (49%), Gaps = 49/435 (11%)
Query: 121 CNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVS 169
C D N++ APT +GKT VA + ++ + + + K++ I P +
Sbjct: 206 CFPTAFNDDGNMLVCAPTGSGKTNVAMLTILREIGKNRNPETGEIMLDDFKIVYIAPLKA 265
Query: 170 IVREKMFYLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNI 228
+V+E++ L GIRV G Q + + + + T EK + + + D
Sbjct: 266 LVQEQVGNFGERLKPYGIRVSELTGDRQLTKQQIADTQIIVTTPEKWDVITRKATDTSYT 325
Query: 229 EDLGAVVVDELHLLGDQNRGYILELLLTK-IKYVTSKSDLLIQVIGMSATLPNLETLATW 287
+ +++DE+HLL D +RG +LE ++++ I+ + D +++IG+SATLPN + ++
Sbjct: 326 RLVRLIIIDEIHLLHD-DRGPVLESIVSRTIRKIEQTGDP-VRLIGLSATLPNYRDVGSF 383
Query: 288 LNAEL------FITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKIC 340
L + F ++RP PL +E+ V +K K I + K+ N C VL+
Sbjct: 384 LRVDPINALFHFDGSYRPCPLKQEFIGVTDK------KAIKQLKTMND--VCYTKVLEQ- 434
Query: 341 LETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQ 400
+ T K +LIF ++ A+ + E G ILRS S+ IL
Sbjct: 435 VGTNKN--QMLIFVHSRKETAKTARYIRDK----AVEMETIGQILRSDAASQAILAEEAD 488
Query: 401 LKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLP 460
N P L+ + +G G HHAG++L +R ++ F G+++VLV T+TL+ GVNLP
Sbjct: 489 AVNDPA-----LKDLMPYGFGIHHAGMSLADRTSVQELFADGSLQVLVCTATLAWGVNLP 543
Query: 461 ARKVIIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNL 514
A VII+ + V+ + ++ QM GRAGR DT GE I+I S+ E + +L
Sbjct: 544 AHTVIIKGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQYDTFGEGIIITSQTEMQYYLSL 603
Query: 515 MMGDLDPVKSCIETK 529
+ L P++S + +K
Sbjct: 604 LNQQL-PIESQLMSK 617
Score = 68.1 bits (159), Expect = 2e-09
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 12/219 (5%)
Query: 96 LPIEISKKYEERGITEMFDWQLACLCNT-KVLFDCANLVY-SAPTSAGKTLVAEILTIKT 153
+P++ K+ E + + +D T K LFD + V+ APT +GKT+ AE +
Sbjct: 774 VPVKALKRPEYQNLYPHWDHFNKVQTQTFKSLFDTDDNVFLGAPTGSGKTVCAEFALLHH 833
Query: 154 VLERQK-KVIIILPFVSIVREKMFYLQNILSS--SGIRVEGFMG-SQSPAGGMQNVHVAI 209
+ K + I PF +V ++ Q LS+ G + G + + ++ + +
Sbjct: 834 WSKSTPGKAVYIAPFQELVDHRVTDWQTRLSNLNGGKAILKLTGETTADLKILEQADLVL 893
Query: 210 CTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLI 269
T + + + + N++ + + DELH+LG Q GYI E++++++ Y+ +++ +
Sbjct: 894 GTPIQWDVLSRQWQRRRNVQAVELFIADELHMLGGQG-GYIYEVVVSRMHYIALQTEKEL 952
Query: 270 QVIGMSATLPNLETLATWLNAEL-----FITTFRPIPLE 303
++IG+S L N + WL A+ F RP+PLE
Sbjct: 953 RMIGLSVPLSNARDIGEWLGAKKHTIYNFSPHVRPVPLE 991
Score = 56.0 bits (129), Expect = 7e-06
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVII-R 467
+Q L ++IS G+GY+H L+ ++ I+ FK GAI+V++A+ + +N A VI+
Sbjct: 1073 EQALAESISHGIGYYHEALSNSDKRIVTHLFKLGAIQVMLASRDVCWEINFNAHLVIVMN 1132
Query: 468 SPVFQKQPINILSYK-----QMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ F + + Y QM G+A R D+ G+ +L+ A K+ + + + P+
Sbjct: 1133 TQFFDGREHRYIDYPISEILQMFGKASRPLEDSSGKGVLMV-PAVKRDYYKKFLNEALPI 1191
Query: 523 KSCIE 527
+S ++
Sbjct: 1192 ESHLQ 1196
>UniRef50_Q3AI75 Cluster: DNA polymerase I; n=15; Cyanobacteria|Rep:
DNA polymerase I - Synechococcus sp. (strain CC9605)
Length = 986
Score = 139 bits (337), Expect = 5e-31
Identities = 125/433 (28%), Positives = 195/433 (45%), Gaps = 51/433 (11%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE + +L+ E GI +D + L ++ + L+ A G FN S K + +
Sbjct: 570 VEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVDFNLASPKQLGE 629
Query: 1137 VL----GI--YNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L G+ R+T ST +VL ++ P+ +V+ R L+ + + + L +
Sbjct: 630 LLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDHPVVPLVLDHRVLSKLKSTYIDALPQ- 688
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ +E R+ + ++ T TGR++ PNLQN+P R
Sbjct: 689 -LVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRI---------------- 731
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F G ++SADY Q+E+R+LTH S + L + DV A D + EV
Sbjct: 732 RKAFLPQEGWTLLSADYSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLLLD--KDEV 789
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D R+ K + +G+IYGMG + ++ VS+ EA F+ +++ YP + F +
Sbjct: 790 SPDERRLGKTINFGVIYGMGAQRFARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLA 849
Query: 1364 KRQGFVETLSGRRRYL--------------PDITSHITSRRNTAE----RQAVNTMIQGS 1405
+G+VET+ GRRR P +RR E R A N IQGS
Sbjct: 850 LSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGS 909
Query: 1406 AADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELK 1465
+ADI K AM ++D + +L+LQ+HDEL+ EV L+ ME EL
Sbjct: 910 SADIIKVAMVQLQDALLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQAFELS 969
Query: 1466 VPLPVKLKCGYTW 1478
VPL V+ G W
Sbjct: 970 VPLVVETGVGANW 982
>UniRef50_Q013J2 Cluster: RNA helicase; n=4; Viridiplantae|Rep: RNA
helicase - Ostreococcus tauri
Length = 2138
Score = 138 bits (335), Expect = 8e-31
Identities = 124/443 (27%), Positives = 215/443 (48%), Gaps = 44/443 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQ-KKVIIILPFVSIVREKMF-YLQNILSSSGIR 188
N++ APT +GKT+ AE+ +K + KV+ I P ++VRE++ + +N+ + G+R
Sbjct: 1302 NVLLGAPTGSGKTISAELAMMKVFRDYAGSKVVYIAPLKALVRERIKDWRKNLCPTLGLR 1361
Query: 189 VEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G +P + + + T EK + + ++ + VV+DE+HLL +R
Sbjct: 1362 MVELTGDYTPDLRALLQADIIVSTPEKWDGISRNWQSRAYVKKVALVVIDEIHLLAS-DR 1420
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LFITTFRPIPL 302
G ILE+++++++Y+++++ +++IG+S L N L WL E F + RP+PL
Sbjct: 1421 GPILEVIVSRMRYISARTGSNVRIIGLSTALANARDLGDWLGIEEEGLFNFRPSVRPVPL 1480
Query: 303 EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCES 362
E C ++ GK+ +S N + T L+F ++ +
Sbjct: 1481 E--CHIQG----FPGKFYCPRM-----MSMNKPTY-AAIRTHSPTKPALVFVSSRRQTRL 1528
Query: 363 LAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGY 422
A L + G + +++E + L ++K+ L LQ FG+G
Sbjct: 1529 TALDL---IAYAAADERPDGFV---HMSNEELSIHLSKVKDP--ALKHTLQ----FGIGL 1576
Query: 423 HHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF------QKQPI 476
HHAGLT ++R++ E F I+VLV TSTL+ GVNLPA V+I+ + + Q
Sbjct: 1577 HHAGLTPEDRELCEELFAQCKIQVLVTTSTLAWGVNLPAHLVVIKGTEYFDGKTKRYQDF 1636
Query: 477 NILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI-ETKEKYMRA 535
I QM GRAGR D G +++ E KK + + + PV+S + E + A
Sbjct: 1637 PITDVLQMMGRAGRPQFDKSGCCVILVHE-PKKTFYKKFLYEPFPVESSLAENLCDHFNA 1695
Query: 536 ILEIIASNISCSKQELLLYTDCT 558
EI++ I +KQ+ + Y T
Sbjct: 1696 --EIVSGTIK-TKQDAVDYLTWT 1715
Score = 64.5 bits (150), Expect = 2e-08
Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 109 ITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV----------LERQ 158
I E+ +W NL+ APT AGKT +A + + + L
Sbjct: 493 IEELDEWAQPARIFPTAYHTNENLLVCAPTGAGKTNIAMLSILHEIGLHIDENGDYLPED 552
Query: 159 KKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANS 217
K++ + P ++ E L+ I V G +Q ++ + + T EK +
Sbjct: 553 FKIVYVAPMKALAAEVTETFGRRLAPLDIVVAELTGDTQMSKRELETTQMIVTTPEKWDV 612
Query: 218 MINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSAT 277
+ + + L +++DE+HLL D+ RG ++E L+ + ++ +I+++G+SAT
Sbjct: 613 ITRKGGEVSVASTLRLLIIDEVHLLNDE-RGPVIETLVARTLRQVEQTQSMIRIVGLSAT 671
Query: 278 LPNLETLATWL----NAELFI--TTFRPIPLEE 304
LPN +A +L +A LF+ ++RPIPL +
Sbjct: 672 LPNPLDVARFLGVNNDAGLFVFDQSYRPIPLTQ 704
>UniRef50_Q4UHC2 Cluster: DEAD-box helicase, putative; n=2;
Theileria|Rep: DEAD-box helicase, putative - Theileria
annulata
Length = 1925
Score = 138 bits (334), Expect = 1e-30
Identities = 127/448 (28%), Positives = 208/448 (46%), Gaps = 50/448 (11%)
Query: 131 NLVYSAPTSAGKT---LVAEILTIKTVLERQKK---VIIILPFVSIVREKMFYLQNILSS 184
NL+ SAPT GKT L+ + + E+ KK VI I P ++ E + L+
Sbjct: 287 NLLISAPTGCGKTNVGLLCLLQNYREYFEQGKKCGKVIYISPMKALASEIVEKYSKSLAH 346
Query: 185 SGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIED------LGAVVVD 237
SG+ V G Q P ++ + + + T EK + + D + ++ D
Sbjct: 347 SGLVVREVTGDFQVPKSELEEIDILVTTPEKCDVVTRNSFSTATQSDDSFLTRVNLIIFD 406
Query: 238 ELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----L 292
E+HLL D+ RG ++E + + + + + +V+GMSATLPN E +AT+L
Sbjct: 407 EIHLLNDE-RGPVIETIAARFFRLIEWTQVTRRVVGMSATLPNYEDIATFLRVPPEHTYY 465
Query: 293 FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
F +R +PL++ Y KN + +N + C D ++ ET++ G ++
Sbjct: 466 FGREYRHVPLQQIF-----YGIKND----DIYKNNMLMICFDHIV----ETLESGKQCMV 512
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F ++N + A + K SE + L+ A +N+ L
Sbjct: 513 FVHSRNETFTTASRIVELVNK-----SEKSELFEPDLSQVKRFSAQLMRRNN-------L 560
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSP--- 469
+ + + HHAGL+ +RD++E FKSG I+VLV TSTL+ GVNLPA VII+
Sbjct: 561 KLLSDYSISIHHAGLSKSDRDLVEEMFKSGLIKVLVCTSTLAWGVNLPAHSVIIKGTFIG 620
Query: 470 -VFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIET 528
V + IN L Q+ GRAGR D +G+ IL+ ++ + + M + P++S +
Sbjct: 621 GVGVDRNINNLELNQIMGRAGRPQFDVEGKGILL-TDHKNLYNYVRMQTERVPIESQLHM 679
Query: 529 K-EKYMRAILEIIASNISCSKQELLLYT 555
E ++ A + I + N L YT
Sbjct: 680 HLENFLNAEIAIGSINNDTDALLWLQYT 707
Score = 110 bits (264), Expect = 3e-22
Identities = 116/447 (25%), Positives = 196/447 (43%), Gaps = 51/447 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVII-ILPFVSIVRE------KMFYLQNILS 183
+LV +APT +GKTLVAE+ + + K+ + I P ++ E K + + IL
Sbjct: 1148 SLVVAAPTGSGKTLVAELGLFRLFDKHPDKIAVYIAPLKALAHERFKDWCKKLHFKKILQ 1207
Query: 184 SSGIRVEGFMGSQS---PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELH 240
+G + +Q + + I T EK + + + + +++DELH
Sbjct: 1208 LTGDTSSNNLDNQLYKFERDELDRYDIVITTPEKWDGISRHWRRKKLVTKVALIILDELH 1267
Query: 241 LLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPI 300
LLG+ +RG I+E ++++ + + ++ I +S +L NL ++ W+ + F P
Sbjct: 1268 LLGE-SRGAIIESIISRQYTINHSTGAQVRYICLSTSLSNLNEISEWIGIPN-VYNFSPA 1325
Query: 301 PLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRC 360
C N Y D + ++ C D+++K +VLIF ++ +
Sbjct: 1326 VRPVKC---NLYIDGFSIKAYCPRMNSMNKPCFDTIIKH-----DHSSNVLIFVSSRRQT 1377
Query: 361 ESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGV 420
AQ L +F I S + + D+ L + G+
Sbjct: 1378 RMTAQDLVGLL--------QFHNISFSNSCDNYFFD------------DEWLNTFVPHGI 1417
Query: 421 GYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPI-NIL 479
G HHAGL+ +R++++ F +G ++VL+ATSTL+ GVNLPA+ VII+ F + +
Sbjct: 1418 GIHHAGLSTKDRELVQDLFLNGKLKVLIATSTLAWGVNLPAKIVIIKGTEFYDGRVKKYI 1477
Query: 480 SYK-----QMSGRAGRMGRDTKGESILICSEAEKKIGF-NLMMGDLDPVKSCIETKEKYM 533
Y QM GRAGR D GE+ +K+GF M P +S EK
Sbjct: 1478 DYSATDIIQMVGRAGRNIYD--GEAYAYVFTETRKVGFYKAFMFTPFPTESFF--LEKIN 1533
Query: 534 RAILEIIASNISCSKQELLLYTDCTLL 560
+ IA+ +K+ L Y T L
Sbjct: 1534 DCLNSEIATGSVTTKKSALEYLSRTFL 1560
>UniRef50_Q8DJ89 Cluster: DNA polymerase I; n=5; Cyanobacteria|Rep:
DNA polymerase I - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 945
Score = 138 bits (333), Expect = 1e-30
Identities = 128/474 (27%), Positives = 208/474 (43%), Gaps = 57/474 (12%)
Query: 1040 LKNLTLAQESCVKAWAIEMISEKQQNALYESY-QNAINVEIKVLKILSNCELHGIVVDKE 1098
L T+AQ + ++ EK + L Q + VE+ + IL+ E GI +D +
Sbjct: 490 LSPATVAQYCGLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEPILAEMEATGIRIDSD 549
Query: 1099 LVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNT 1158
+ +L ++ LQ++A+ G FN S K ++++L G T ++T
Sbjct: 550 YLRQLSQELEQQLAALQQQAWDAVGQPFNLASPKQLSELLFGTLGLDTKKTHKTKLGYST 609
Query: 1159 ------------PISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYS-TFTCTG 1205
P+ +++ R L + K Y + + R+ + ++ T TG
Sbjct: 610 DAATLEKLRGDHPVIDLILSHRTLAKL--KSTYVDVLPTLVRPDTGRVHTEFNQAVTATG 667
Query: 1206 RITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEM 1265
R++ PNLQN IP+R T I R F G ++V+ADY Q+E+
Sbjct: 668 RLSSSSPNLQN------IPIR------TEFSRQI----RRAFIPEAGWLLVAADYSQIEL 711
Query: 1266 RLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNK 1325
R+L H S++ AL + DV + A + + ++ R+ K + +G+IYGMG +
Sbjct: 712 RILAHLSQEPALLAAYQEGADVHRLTAQFLLE--KTDISSSERRLGKMINFGVIYGMGPQ 769
Query: 1326 TLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSH 1385
++ VS EA +F+ F YP + + + + QG+VET+ GRRRY +
Sbjct: 770 RFAREAGVSVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFESRE 829
Query: 1386 ITSRRN-----TAE----------------RQAVNTMIQGSAADIAKSAMCSIEDGINSF 1424
+ S R A+ R A N IQGS+ADI K AM + +
Sbjct: 830 LQSLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAPIQGSSADIIKCAMVKLAPLLPP- 888
Query: 1425 NPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTW 1478
K RL+LQ+HDEL+ E+ + + VM V L VPL V + W
Sbjct: 889 -EKARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVPLSVPLAVDIYAAANW 941
>UniRef50_Q3AZ16 Cluster: DNA polymerase A; n=10; Cyanobacteria|Rep:
DNA polymerase A - Synechococcus sp. (strain CC9902)
Length = 998
Score = 138 bits (333), Expect = 1e-30
Identities = 124/433 (28%), Positives = 200/433 (46%), Gaps = 51/433 (11%)
Query: 1077 VEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAK 1136
VE + +L+ E GI +D + L ++ + + L+ A ++ FN S K + +
Sbjct: 582 VEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETDAKQVAEVDFNLASPKQLGE 641
Query: 1137 VL----GI--YNGRKT----STRKSVLSS--HNTPISSIVMYWRKLNAILTKILYPLTEK 1184
+L G+ R+T ST +VL ++ P+ +V+ R L+ + + + L +
Sbjct: 642 LLFDTLGLDRKKSRRTKTGFSTDATVLEKLENDHPVVPLVLEHRVLSKLKSTYVDALPQ- 700
Query: 1185 ACIYSEGDRIMSSYS-TFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNC 1243
+ +E R+ + ++ T TGR++ PNLQN+P R
Sbjct: 701 -LVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRI---------------- 743
Query: 1244 RNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEV 1303
R F G ++SADY Q+E+R+LTH S + L + DV A D + +V
Sbjct: 744 RKAFLPQEGWTLLSADYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLLLD--KDDV 801
Query: 1304 DDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEEC 1363
D R+ K + +G+IYGMG + ++ VS EA F+ +++ YP + F +
Sbjct: 802 SADERRLGKTINFGVIYGMGAQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLA 861
Query: 1364 KRQGFVETLSGRRRYL--------------PDITSHITSRRNTAE----RQAVNTMIQGS 1405
+G+VET+ GRRR P +RR E R A N IQGS
Sbjct: 862 LSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGS 921
Query: 1406 AADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELK 1465
+ADI K AM ++ + S RL+LQ+HDEL+ EV +L+ + ME+ V+L
Sbjct: 922 SADIIKVAMVQLQAVLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVKLS 981
Query: 1466 VPLPVKLKCGYTW 1478
VPL V+ G W
Sbjct: 982 VPLVVETGVGRDW 994
>UniRef50_A0CXW7 Cluster: Chromosome undetermined scaffold_30, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_30,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 2116
Score = 138 bits (333), Expect = 1e-30
Identities = 117/395 (29%), Positives = 198/395 (50%), Gaps = 46/395 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLER--QK---------KVIIILPFVSIVREKMFYLQ 179
NL+ APT AGKT +A + ++ + +R QK K++ I P ++ E + Q
Sbjct: 476 NLLVCAPTGAGKTNIALLAILQELSKRVDQKEKRLKDQDFKIVYISPMKALASEIVEKFQ 535
Query: 180 NILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDE 238
L G++V+ F G Q +Q H+ + T EK + + + N E L +++DE
Sbjct: 536 TKLRYLGVKVKEFTGDMQLSKKELQETHIILTTPEKWDVITRKT--NQISEQLKLLIIDE 593
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LF 293
+HLL D +RG ILE ++ + ++ I+++G+SATLPN +A +L F
Sbjct: 594 VHLLND-DRGPILECVVARTLQQVQRAQSYIRLVGLSATLPNYWDVAIFLECHKDSVFFF 652
Query: 294 ITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIF 353
TFRP+PL + + + K + + + + N+ ++ E +K VLIF
Sbjct: 653 DHTFRPVPLCQKFIGCKEPVQAPAKG--QRRRTKRDIQ-NEQAYELMKEVVKHNKQVLIF 709
Query: 354 CMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQ 413
++ + A+ + ++G + +I +++N + D L+
Sbjct: 710 VHSRKETVNYAKWIVERATRLG----DKYVIGTTKINCTKV-------------NDNELK 752
Query: 414 KTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVF- 471
K + +G+ +HHAG+ +R+ +E F SG RVL+AT+TL+ GVNLPA VII+ + +F
Sbjct: 753 KLLPYGLAFHHAGMLRADRNSVERFFLSGDARVLIATATLAWGVNLPAFAVIIKGTDIFD 812
Query: 472 ----QKQPINILSYKQMSGRAGRMGRDTKGESILI 502
Q + +L +QM GRAGR D KGE+ LI
Sbjct: 813 VTRADMQNLCVLDVQQMFGRAGRPQFDDKGEATLI 847
Score = 115 bits (277), Expect = 9e-24
Identities = 100/409 (24%), Positives = 195/409 (47%), Gaps = 39/409 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLER-QKKVIIILPFVSIVREKMFYLQNILSSSGIRV 189
N++ APT +GKT++AE ++ + Q K++ I P +I +E++ L + V
Sbjct: 1349 NILIGAPTGSGKTIMAEFAMLRVFKQSPQFKIVYIAPLKAIAKERLLDWTKRLKNINKNV 1408
Query: 190 EGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
G +P + HV I T EK + + + ++ ++ DE+HLLG Q RG
Sbjct: 1409 LELTGDYTPDLQALLKAHVLITTPEKWDGISRSWNNREYVKQTCLLIFDEIHLLG-QERG 1467
Query: 249 YILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPLE 303
+LE++++++ ++ ++ ++IG+S + N ++ W + F + RP+P+
Sbjct: 1468 QVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNFKPSCRPVPVT 1527
Query: 304 EYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESL 363
+ N + ++ Y + N + ++ +G +IF ++ +
Sbjct: 1528 IHF---NGFPER--AYCPRMATMNKPAYQD-------IKRYSDGKPTIIFVSSRRQTRLT 1575
Query: 364 AQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYH 423
A + + + EG+E I Q + + + ++ ++ L Q+L +GVG H
Sbjct: 1576 ALDIIALAMQ---EGNEKQYI---QTTEQELAQVCNKVDDAQ--LKQVL----LYGVGIH 1623
Query: 424 HAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPIN------ 477
H+GL ++R+I+E F G I++L+ATSTL+ GVN PAR VI++ F +
Sbjct: 1624 HSGLDKNDRNIVENLFVQGKIQLLIATSTLAWGVNFPARLVIVKGTEFFDPKLKKYVDFP 1683
Query: 478 ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI 526
+ QM GRAGR DT + + +++K + + P++S +
Sbjct: 1684 VTDLLQMIGRAGRPQYDTFATACVYVEQSKKNF-YRKYLNSPFPIESSL 1731
>UniRef50_Q235I9 Cluster: Type III restriction enzyme, res subunit
family protein; n=2; Eukaryota|Rep: Type III restriction
enzyme, res subunit family protein - Tetrahymena
thermophila SB210
Length = 2678
Score = 137 bits (332), Expect = 2e-30
Identities = 145/533 (27%), Positives = 255/533 (47%), Gaps = 69/533 (12%)
Query: 131 NLVYSAPTSAGKTLVAEILTI-----------KTVLERQKKVIIILPFVSIVREKMFYLQ 179
N++ APT AGKT +A + + K +++ K+I I P ++ E +
Sbjct: 515 NILICAPTGAGKTNIALMTVLREIEKHINPQTKQLIDPTFKIIYISPMKALASEIVDKFS 574
Query: 180 NILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDE 238
+L ++ + G Q ++ + + T EK + + N E L +++DE
Sbjct: 575 GMLKHMNVKCKELTGDMQLTKKEIEETQIIVTTPEKWDVFTRK--KNEVAETLRLLIIDE 632
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LF 293
+HLL D+ RG +LE L+++ + ++++G+SATLPN +A++L+ + F
Sbjct: 633 IHLLNDE-RGPVLECLVSRTLQNIERQQKSVRMLGLSATLPNYLDVASFLHVKKESVFFF 691
Query: 294 ITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
T+RP+PL + Y V K + ++ K + + S+ K LE K+ VLI
Sbjct: 692 DATYRPVPLMQRYIGVRE---PKQSGFKVKRKKIDIYNDLSYSISKGILEHKKQ---VLI 745
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNS-PVGLDQI 411
F ++ AQ + + + G + H+ + + K+S P D+
Sbjct: 746 FVHSRKETIVTAQYVLK-------KAQDCGEL--------HLFKPVNSDKHSLPKIKDKE 790
Query: 412 LQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPV 470
LQK +G+G+HHAG+ +R+I+E F G IR+LVAT+TL+ GVNLPA VII+ + V
Sbjct: 791 LQKLAPWGLGFHHAGMLRKDRNIVEKMFNDGQIRILVATATLAWGVNLPAYGVIIKGTDV 850
Query: 471 FQ-----KQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSC 525
+ Q +++L +QM GRAGR D GE+ L+ ++ K F + + ++S
Sbjct: 851 YDPSRGGTQDLSVLDIQQMFGRAGRPQFDNNGEATLM-TDINKLNSFVAQLNNASFIESR 909
Query: 526 IETKEKYMRAILEIIASNISCSKQ--ELLLYTDCTL------------LSAQKEILSQNL 571
T EI NI+ K+ + + YT ++ ++ KE+ +
Sbjct: 910 F-TAHLKEALNAEIALGNIATLKEAFDWVNYTFYSIRLRRNPMGYGCKIAQNKELSIEMH 968
Query: 572 ILEDTLKELENYELIRIQNNHSENHYVA-TALGKACLSSSMAPN-DGLTLFCE 622
I E LE+ + +R+ +N+Y+A T LG+ ++S N D + FC+
Sbjct: 969 ITETIENALEHLDKLRLIRWDRQNNYLASTELGR--ITSHYYINCDTMNTFCK 1019
Score = 79.4 bits (187), Expect = 7e-13
Identities = 49/185 (26%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQKKVIIIL---PFVSIVREKMFYLQNILSSSG 186
N++ +PT +GKT+++E+ ++ L +KKV++++ P +I +E++ + G
Sbjct: 1417 NILIGSPTGSGKTIMSELSALRVFNLYPEKKVMLVIYVAPLKAIAKERLADWEVRFGKIG 1476
Query: 187 IRVEGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQ 245
V G +P + V I T EK + + + ++ G V+ DE+HLLG Q
Sbjct: 1477 KTVLELTGDYTPDLDALLKADVLITTPEKWDGISRNWHNRNYVQKTGLVIFDEIHLLG-Q 1535
Query: 246 NRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPI 300
+RG +LE++++++ ++SK+ ++++G+S + N +A W F RP+
Sbjct: 1536 DRGPVLEVIVSRMNMISSKTGHKVRMVGLSTAMANGTDVADWFGVPKNYFFNFRPHVRPV 1595
Query: 301 PLEEY 305
PL+ Y
Sbjct: 1596 PLKIY 1600
Score = 72.9 bits (171), Expect = 6e-11
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 418 FGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF----QK 473
+ +G HHAGL D+R I+E F + +++LVATSTL+ GVNLPAR VII+ + K
Sbjct: 1684 YQLGMHHAGLDQDDRKIVEELFLNHKVQILVATSTLAWGVNLPARLVIIKGTEYFDPKTK 1743
Query: 474 QPIN--ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI 526
+ ++ + QM GRAGR D KG + + +++K + + D P++S +
Sbjct: 1744 RYVDMPVTDILQMIGRAGRPQFDDKGIACVFVEQSKKNF-YRKYLNDPFPIESSL 1797
>UniRef50_A7AM78 Cluster: Sec63 domain containing protein; n=1;
Babesia bovis|Rep: Sec63 domain containing protein -
Babesia bovis
Length = 2133
Score = 136 bits (330), Expect = 3e-30
Identities = 129/448 (28%), Positives = 217/448 (48%), Gaps = 56/448 (12%)
Query: 125 VLFDC--ANLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVSIV 171
V F+C N++ APT AGKT VA +L + +VL+R + K++ I P S+V
Sbjct: 492 VAFNCFEENMLVCAPTGAGKTNVA-VLAMLSVLDRHRDETGNLNLHDFKIVYISPMKSLV 550
Query: 172 REKMFYLQNILSSSGIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIED 230
E+ + GI V G S + + + + T EK + ++ R NI
Sbjct: 551 MEQAQSFSQRFAPYGISVRELTGDMSLTRNQLMDTQLLVVTPEKWD-VVTRRSGMENIVQ 609
Query: 231 LGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNA 290
L +++DE+HLL D+ RG +LE ++ + + ++ +++G+SAT+PN +A +L
Sbjct: 610 L--IIIDEIHLLHDR-RGPVLEAIVARTMHNDRRNKTKTRLVGLSATMPNYGDIAEFLRV 666
Query: 291 E------LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETI 344
+ F +RP+ LE+ +Y K ++ Y V N+ V + +E
Sbjct: 667 DPEKGLFYFGNHYRPVGLEQ------RYIGIKEKKAVK----RYNVM-NELVYERVMEDA 715
Query: 345 KEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEA-LEQLKN 403
+ VL+F ++ A+L+ K G+ L S S IL E +K
Sbjct: 716 GKN-QVLVFVHSRKETARTAKLIRDMAFKT----DNLGIFLHSDSASREILSTESEAIKT 770
Query: 404 SPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK 463
+ L++ + +G+G HHAGL +R ++E F G I++L++T+TLS GVNLPA
Sbjct: 771 TE------LKELLPYGLGIHHAGLPRSDRKLVEDLFSDGHIQLLISTATLSWGVNLPAHT 824
Query: 464 VIIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMG 517
VII+ + V+ + + LS +QM GRAGR D +G+ I+I S ++ + +L
Sbjct: 825 VIIKGTQVYSPEEGCWTELCPLSVQQMLGRAGRPQYDKEGKGIIITSHSKLQFYLSLNNQ 884
Query: 518 DLDPVKSCIETKEKYMRAILEIIASNIS 545
L + T + A EI+ NI+
Sbjct: 885 QLPIESQLVTTLPDLLNA--EIVLGNIT 910
Score = 67.3 bits (157), Expect = 3e-09
Identities = 94/437 (21%), Positives = 196/437 (44%), Gaps = 34/437 (7%)
Query: 136 APTSAGKTLVAEILTIKTVLERQKK-VIIILPFVSIVREKMFYLQNILSSSGIRVEGFMG 194
AP+ +GK AEI ++ + + V++I PF S+ ++++ L++ +V+ +G
Sbjct: 1362 APSRSGKFTCAEIAIVRCLSTTENATVVVISPFKSVQQQRLNRLRHKFGDI-CQVKPLVG 1420
Query: 195 S-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILEL 253
++ + + + T + + + R ++ + ++V+ L L+ D G +E+
Sbjct: 1421 DVKTDLVTIAQSTIVVATPRQWDFVSRRWKTKRCLQSVDLIIVENLELIEDPTVGPEIEV 1480
Query: 254 LLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-LFITTFRPIPLEEYCLVENKY 312
++++++V+++ +++G+ + N L W+ A I +FRP + V K+
Sbjct: 1481 SISRMRFVSAQLGYHTRIVGLGGPVSNALDLGAWIGANGNNIFSFRP---NSHRTVGPKF 1537
Query: 313 YDKN-GKYILEAKS-SNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSST 370
++ ++ E + + + CN V+ C + S +IF + + A+L++
Sbjct: 1538 TIQSFDQWDDETRRFAMFNTVCN-FVINTCRTLDDDQQSAIIFTVDRR----FARLMAME 1592
Query: 371 FCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLD 430
+ E + + + QL E E+L L ++Q GVGY H G +
Sbjct: 1593 ML-LSLEYTGESLSVAEQLTG----ECWERLSTRERALGTLVQA----GVGYCHEGFSDA 1643
Query: 431 ERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQ--KQPINILSYKQ----- 483
E I+ ++ G I+VL+ T++ +++ A V+I +PI+ Y Q
Sbjct: 1644 EIRYIQDLYQRGVIKVLICTASAIWTMSIYAPVVVIADITVSATNRPISQSMYPQTDLTR 1703
Query: 484 MSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETK-EKYMRAILEIIAS 542
M A LI E+ K+ ++ D PV+SC+E + E+ + A EI+
Sbjct: 1704 MLSCAYVSDDAAHRPQALILYESSKRRQLYKLLEDAFPVESCLENRIEELINA--EIVQG 1761
Query: 543 NISCSKQELLLYTDCTL 559
I S Q+ + + TL
Sbjct: 1762 AIE-SPQDAIDWLTWTL 1777
>UniRef50_Q6C0Y6 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 2106
Score = 136 bits (330), Expect = 3e-30
Identities = 122/438 (27%), Positives = 206/438 (47%), Gaps = 47/438 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK----------KVIIILPFVSIVREKMFYLQN 180
N++ APT AGKT VA + ++ + + K++ I P ++V+E++
Sbjct: 470 NMLICAPTGAGKTNVAFLAMLRCLSHFRAPNGGFRTNDFKMVYIAPLKALVQEQVREFSK 529
Query: 181 ILSSSGIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
L+S G++V G + + + + T EK + + + D+ + +V+DE+
Sbjct: 530 RLNSMGLKVSELTGDHNLTKQQIAETQLLVTTPEKWDVITRKAADSSYTNLVRLIVIDEI 589
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LFI 294
HLL D+ RG +LE ++ + + ++ ++++G+SATLPN + +A++L F
Sbjct: 590 HLLHDE-RGPVLESIVARTTRRSEQTGDPVRIVGLSATLPNFKDVASFLRVGETGLFYFD 648
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
+TFRP PL + L I E K+ + ND+ +E IK G V++F
Sbjct: 649 STFRPCPLGQRFLG-----------ITEKKAFKRYTAMNDACFDKVIENIKAGHQVIVFV 697
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
++ A++L G +L S+ L + P LD ++
Sbjct: 698 HSRKETAKTARMLRDRAMDEG--------LLPLFCASDGSRRTLAERAQDPE-LDATQKE 748
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF--- 471
I G+ HHAGL +R E F G +RVLV+T+TL+ GVNLPA VII+
Sbjct: 749 IIGTGLATHHAGLAQVDRKAAEELFAEGHVRVLVSTATLAWGVNLPAHTVIIKGTQIYNP 808
Query: 472 ---QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIET 528
Q ++ QM GRAGR D GE I+I + E +LM L P++S + +
Sbjct: 809 AKGQWTELSPQDVLQMLGRAGRPRYDDSGEGIIITTHGELNYYLSLMNQQL-PIESQLMS 867
Query: 529 K-EKYMRAILEIIASNIS 545
+ E + A E++ +S
Sbjct: 868 RLEDSLNA--EVVGGTVS 883
>UniRef50_Q9UT24 Cluster: Pre-mRNA-splicing factor brr2; n=4;
Eukaryota|Rep: Pre-mRNA-splicing factor brr2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 2176
Score = 136 bits (329), Expect = 4e-30
Identities = 126/439 (28%), Positives = 214/439 (48%), Gaps = 54/439 (12%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK----------KVIIILPFVSIVREKMFYLQN 180
N++ APT AGKT VA + + + + + K++ I P ++V+E +
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 181 ILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
L+ IRV G SQ + + + T EK + + + D + + V++DE+
Sbjct: 597 RLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEV 656
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE------LF 293
HLL D+ RG +LE ++ +I ++ ++++G+SATLPN +A++L+ + F
Sbjct: 657 HLLHDE-RGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYF 715
Query: 294 ITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
+T+RP PL +E+ + K K + EA C + V++ + VLI
Sbjct: 716 DSTYRPCPLKQEFIGITEKTPFKRMQTTNEA--------CYEKVMQHAGKN-----QVLI 762
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F ++ A+ + E G +LRS S IL A E S D+ L
Sbjct: 763 FVHSRKETAKTARFIRDK----ALEEETIGHLLRSDAASREILRA-EADSTS----DENL 813
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVF 471
+ + +G HHAG+ ++R E F G I+VLV+T+TL+ GVNLPA VII+ + V+
Sbjct: 814 KDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVY 873
Query: 472 QKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCI 526
+ ++ QM GRAGR DT GE I+I + +E + +LM L P++S
Sbjct: 874 SPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQL-PIES-- 930
Query: 527 ETKEKYMRAILEIIASNIS 545
++MR + + + + +S
Sbjct: 931 ----QFMRRLADCLNAEVS 945
Score = 48.8 bits (111), Expect = 0.001
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 136 APTSAGKTLVAEILTIKT-VLERQKKVIIILPFVSIV--REKMFYLQNILSSSGIRVEGF 192
AP +GKT+ AE+ + E + I P IV R + +Y + G +
Sbjct: 1387 APNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKL 1446
Query: 193 MGSQSPAGGM-QNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYIL 251
G +S + Q + CT + +S+ R +I+ + + DEL LLG G +
Sbjct: 1447 TGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFY-GPLY 1505
Query: 252 ELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWL 288
E+++++I+Y+ + + I+V+G+S ++ N L WL
Sbjct: 1506 EIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWL 1542
>UniRef50_A7AW09 Cluster: Helicase, putative; n=1; Babesia
bovis|Rep: Helicase, putative - Babesia bovis
Length = 1798
Score = 136 bits (328), Expect = 6e-30
Identities = 117/394 (29%), Positives = 186/394 (47%), Gaps = 46/394 (11%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVL------ERQKKVIIILPFVSIVREKMFYLQNILSS 184
N++ SAPT GKT VA + ++ E+ KV+ + P ++ E L
Sbjct: 186 NMLISAPTGCGKTNVALLCALQNFESYFNGGEKNTKVVYVAPMKALASEVTGKFSKSLVD 245
Query: 185 SGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIED------LGAVVVD 237
G+RV G +Q P + ++ V I T EK + + G D + +++D
Sbjct: 246 LGLRVREVTGDTQVPTSELGSIDVLITTPEKLDVITRNSYSTGTQSDDSFLTKVSCLIID 305
Query: 238 ELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWL-----NAEL 292
E+HLL D RG +LE ++ +I + + +++G+SATLPN + +A +L +A
Sbjct: 306 EVHLLND-TRGIVLETVVARILRLIESTQETRRIVGISATLPNWKDVAEFLRVAPEHAYH 364
Query: 293 FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
F +R +PL + +Y GK I + Y + C D ++ +T++ G +I
Sbjct: 365 FGPEYRHVPLSQV------FYGVKGKDIT---GTMYEI-CFDHII----QTLENGKQCII 410
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F ++N A L + F Q N + +QLK S D +
Sbjct: 411 FVHSRNETSMTANKLIEMIQESPSHQKLF------QPNRDIYQRFHKQLKKSKH--DNV- 461
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF- 471
++ + + HHAG+ +RD++E FK G I+VLV+TSTL+ GVNLPA VII+
Sbjct: 462 ERFAEYCMSIHHAGMVRRDRDVVENMFKEGLIKVLVSTSTLAWGVNLPANCVIIKGTFIG 521
Query: 472 ---QKQPINILSYKQMSGRAGRMGRDTKGESILI 502
+ IN L Q+ GRAGR DT G +LI
Sbjct: 522 GLGVDRNINYLELTQIMGRAGRPQFDTSGTGVLI 555
Score = 71.7 bits (168), Expect = 1e-10
Identities = 57/244 (23%), Positives = 118/244 (48%), Gaps = 9/244 (3%)
Query: 49 QKHVNRRFVNTASNNSLLNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIE-ISKKYE-E 106
Q+ + F+ ++ L + E +L +K + ++ +K LK W +P + + K++ +
Sbjct: 983 QREDDTYFILKVFSSKWLGLSFEQQLR-TKRLAYVEEGYTKLLKLWPMPTKALCDKFDYQ 1041
Query: 107 RGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQ-KKVIIIL 165
Q+ C L+ NL+ APT +GKT+VAE+ + + KKV+ I
Sbjct: 1042 HKYFNPLQTQMLSYC----LYHDDNLLVGAPTGSGKTVVAELAMFRLWRTQVCKKVVYIA 1097
Query: 166 PFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDN 225
P ++ E++ VE S++ + N V + T EK + +
Sbjct: 1098 PLKALAYERLKDWNKKFGMFKKVVEVTGDSRTSVKEIVNSDVIVTTPEKWDGISRHWKTR 1157
Query: 226 GNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLA 285
+ +G +V+DE+HLLG ++RG +LE +++++ +++ + +++ +S L N +A
Sbjct: 1158 KYVRSVGLIVIDEVHLLG-ESRGAVLEAIVSRLCFISKFTQSNTRLVCLSTALANPGEIA 1216
Query: 286 TWLN 289
W++
Sbjct: 1217 DWIS 1220
Score = 66.9 bits (156), Expect = 4e-09
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 408 LDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR 467
+D+ L + G+G HHAGL +R IE + G I+VL+AT+TL+ GVNLPA+ VI++
Sbjct: 1313 IDENLNVFVEHGIGIHHAGLHDSDRIRIEEMYLKGEIKVLIATATLAWGVNLPAKIVIVK 1372
Query: 468 SPVF------QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDP 521
+ + ++ QM GRAGR D K + +E+ K + M P
Sbjct: 1373 GTEYYDGKTKKYADYSVTDILQMVGRAGRRVFD-KEAYAYVYTESRKVDFYKAFMFSPFP 1431
Query: 522 VKSCIETKEKYMRAILEIIASNISCSKQELLLY 554
+S E+ + ++ IAS +K + L Y
Sbjct: 1432 AESSFH--ERLLDSMNSEIASGTIANKAQGLQY 1462
>UniRef50_UPI0000E4A360 Cluster: PREDICTED: similar to RNA helicase;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to RNA helicase - Strongylocentrotus purpuratus
Length = 1419
Score = 135 bits (327), Expect = 7e-30
Identities = 115/418 (27%), Positives = 201/418 (48%), Gaps = 40/418 (9%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLER----------QKKVIIILPFVSIVREKMFYLQN 180
NL+ APT AGKT +A + ++ V + + KV+ + P ++ E +
Sbjct: 148 NLLICAPTGAGKTNIAMLAILQEVRKHLDARGAVKHNEFKVVYVAPMKALAAEMTRTFGS 207
Query: 181 ILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDL-GAVVVDE 238
L G+ V G Q M + H+ + T EK + + + + + + L +++DE
Sbjct: 208 RLKPLGLSVRELTGDMQLTKKEMMDTHMLVTTPEKWDVVTRKSVGDVALTQLVKLLIIDE 267
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL------ 292
+HLL ++RG ++E L+ + ++++G+SATLPN E +A +L+ L
Sbjct: 268 VHLL-HEDRGAVIESLVARTLRQVESYQNNVRIVGLSATLPNYEDVARFLHVNLKTGLFY 326
Query: 293 FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
F FRP+PL + + G +E + V C + V + + +G V++
Sbjct: 327 FDARFRPVPLRQTYIGVQLGSGGGGSRFVEQRK-RMDVVCYEKVRNL----VDQGHQVMV 381
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F +N A + S+ + + + ++ N E+ A E+++ S ++ L
Sbjct: 382 FVFARN-----ATVKSAIDLRDRAIANNESKMFSAEENEEYEA-AREEVQKSR---NRQL 432
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF- 471
++ G G HHAG+ +R+++E F +G I+VL TSTL+ GVNLPA VII+ F
Sbjct: 433 KELFDVGFGMHHAGMLRQDRNLVERYFAAGLIKVLCCTSTLAWGVNLPAHAVIIKGTQFY 492
Query: 472 -----QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS 524
+ + I IL Q+ GRAGR DT GE +I + K + + +M D P++S
Sbjct: 493 DPDKSKFEDIGILDVLQIFGRAGRPQYDTFGEGYII-TAINKLVHYLKLMMDQTPIES 549
Score = 101 bits (241), Expect = 2e-19
Identities = 101/396 (25%), Positives = 184/396 (46%), Gaps = 50/396 (12%)
Query: 130 ANLVYSAPTSAGKTLVAEILTIKTVLER-QKKVIIILPFVSIVREKMFYLQ----NILSS 184
+N++ AP GK++ E+ + R KV+ I P S++R + + +IL
Sbjct: 892 SNVLIGAPGGMGKSVATELAILGAFRARPDTKVVYIAPLRSLLRRRFRVWRARFGDILGK 951
Query: 185 SGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGD 244
+ G + S ++ + + T EK +++ R N ED+ +V+D+L L
Sbjct: 952 KVFMLNGDVSSD--VNTVKRADIILATSEKWDAVCRR---GQNTEDVSLLVLDQLQFLAS 1006
Query: 245 QNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRP 299
+ G LE ++T++K +TS+S ++++ +S + N +A WL+ + F RP
Sbjct: 1007 -DCGPALEAIVTRMK-ITSRSTSKVRIVALSTPMSNSIEVAEWLDVKEVGSYNFKADERP 1064
Query: 300 IPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNR 359
+PLE L +GKY N + N + + +E V+IF +K +
Sbjct: 1065 VPLEITVL------GFSGKYY-----HNRAAAMNKPIYQEIQANAREK-PVIIFVASKKQ 1112
Query: 360 CESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFG 419
+ A L + + I ++ SE I E + + D L+ +++FG
Sbjct: 1113 TSATAFELIAHL-----RTEKDPKIWLHEMTSEEIEEVCKDIT------DDNLKLSLTFG 1161
Query: 420 VGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVII--------RSPVF 471
VG HHAGL++++R +E ++ I+VLVAT L+ +L AR V++ +S +
Sbjct: 1162 VGVHHAGLSVEDRRTVEQLYRERHIQVLVATKNLAWATDLGARLVVVKGTEQYDAKSERY 1221
Query: 472 QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAE 507
P+ QM GRAG RD KG ++++ + +
Sbjct: 1222 VDMPVT--DILQMVGRAGHHSRDHKGSAVVMVHDVK 1255
>UniRef50_Q54G57 Cluster: DEAD/DEAH box helicase; n=1; Dictyostelium
discoideum AX4|Rep: DEAD/DEAH box helicase -
Dictyostelium discoideum AX4
Length = 2195
Score = 134 bits (325), Expect = 1e-29
Identities = 118/437 (27%), Positives = 210/437 (48%), Gaps = 48/437 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV---------LERQK-KVIIILPFVSIVREKMFYLQN 180
N++ SAPT AGKT +A + + + L++ K+I I P ++ E + N
Sbjct: 500 NILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSN 559
Query: 181 ILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
L GI + G Q ++ + + T EK + + + D + + +++DE+
Sbjct: 560 SLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEI 619
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNA-----ELFI 294
HLL ++ RG +LE ++ + + +I+++G+SATLPN + +A ++ A F
Sbjct: 620 HLLHEE-RGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFD 678
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
+++RP+P L +N K+ + I+ K +N C + + K ++KEG V+IF
Sbjct: 679 SSYRPVP-----LTQNFIGVKDNQGIMVMK-NNMNQLCYERLEK----SLKEGHQVMIFV 728
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQK 414
++ A++LS E ++ S + E++K+ + +
Sbjct: 729 HSRKDTVKSAEILSDM-------AKEKHFRFSNEEPSFGAKKEFEKVKSKEI------RS 775
Query: 415 TISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQK 473
G+ HHAGL +R+++E F +G I+VLV T+TL+ GVNLPA VII+ + V+
Sbjct: 776 LFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNA 835
Query: 474 Q-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIET 528
+ + I Q+ GRAGR DT GE L+ S+ + +LM + I
Sbjct: 836 KNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITN 895
Query: 529 KEKYMRAILEIIASNIS 545
E ++ A EI+ +S
Sbjct: 896 LEDHLNA--EIVLGTVS 910
Score = 85.8 bits (203), Expect = 8e-15
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
DQ L+ T+SFG+G HHAGL +R I+E F I++L++TSTL+ GVNLPA VII+
Sbjct: 1604 DQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKG 1663
Query: 469 PVF----QKQPIN--ILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ K+ ++ + QM GRAGR D +G+++++ E +K+ + + D PV
Sbjct: 1664 TEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQF-YKKFLYDPFPV 1722
Query: 523 KSCI-ETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELE 581
+S + + ++ A EI++ I SKQ + Y T + + LED E
Sbjct: 1723 ESHLKDFLHDHLNA--EIVSGTIQ-SKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVEAV 1779
Query: 582 NYEL 585
N L
Sbjct: 1780 NQYL 1783
Score = 83.8 bits (198), Expect = 3e-14
Identities = 49/181 (27%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVL-ERQKKVIIILPFVSIVREKMF-YLQNILSSSGIR 188
N++ +PT +GKT+ AE+ K E KV+ I P ++VRE+M + G +
Sbjct: 1344 NVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKK 1403
Query: 189 VEGFMGSQSPAG-GMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ G +P +QN + T EK + + + + + +++DE+HL+G+ R
Sbjct: 1404 LVELTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGEL-R 1462
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPL 302
G ILE++++++K ++ ++ + I+V+G+S + N L+ W+ + F + RP+P+
Sbjct: 1463 GPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPI 1522
Query: 303 E 303
E
Sbjct: 1523 E 1523
>UniRef50_A3GEY0 Cluster: RNA helicase-related protein required for
pre-mRNA splicing; n=5; Saccharomycetaceae|Rep: RNA
helicase-related protein required for pre-mRNA splicing
- Pichia stipitis (Yeast)
Length = 2111
Score = 134 bits (324), Expect = 2e-29
Identities = 127/404 (31%), Positives = 202/404 (50%), Gaps = 58/404 (14%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-----LERQK------KVIIILPFVSIVREKMFYLQ 179
NL+ APT AGKT VA + ++T+ E K K++ I P ++V+E+M Q
Sbjct: 486 NLLLCAPTGAGKTNVAMLSVLRTINNYRNAETGKIDLKNFKIVYIAPLKALVQEQMREFQ 545
Query: 180 NILSSS-GIRVEGFMGSQS-PAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVD 237
L+S+ + V G S A + V + T EK + ++ R D ++ + +++D
Sbjct: 546 RRLTSNFNLVVNELTGDSSLSARQIHETQVIVTTPEKWD-VVTRKNDVPYVKLVRLIIID 604
Query: 238 ELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL----- 292
E+HLL D+ RG +LE +L++ + +++IG+SATLPN + +A +L +L
Sbjct: 605 EIHLLHDE-RGPVLENILSRTLRQVEATAEPVRLIGLSATLPNYKDVAQFLRVDLQKGLF 663
Query: 293 -FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVL 351
F ++RP PLE+ + I E K+ + N++ LE I + ++
Sbjct: 664 YFDASYRPCPLEQQFIG-----------IKEKKAIKKLTAMNEACYDKLLECITKKHQLI 712
Query: 352 IFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGL-DQ 410
IF ++ A+ L K+ +G + N+E + E LK G D
Sbjct: 713 IFVHSRKDTFKTAKWLKD---KLEEDGKSW--------NTE--VSTAEILKQEANGFKDL 759
Query: 411 ILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR--- 467
L++ + G+G HHAGL ER ++E F G ++VLV+T+TL+ GVNLPA VII+
Sbjct: 760 SLKEIVPGGIGIHHAGLIKGERSVVEDLFAQGHLQVLVSTATLAWGVNLPAHTVIIKGTE 819
Query: 468 --SPV----FQKQPINILSYKQMSGRAGRMGRDTKGESILICSE 505
SP Q P +IL QM GRAGR D GE ++I S+
Sbjct: 820 TYSPERGTWIQLSPQDIL---QMLGRAGRPRYDKSGEGVIITSQ 860
Score = 65.3 bits (152), Expect = 1e-08
Identities = 81/427 (18%), Positives = 188/427 (44%), Gaps = 45/427 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYL----QNILSSSG 186
N+ GKT+ AE+ + E +++ + P S + EK+ + N L S
Sbjct: 1330 NIFIGISKGGGKTVCAELAILNHWNEAGGRIVYLTPNKSKI-EKLARVWTKKYNNLEKSV 1388
Query: 187 IRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQN 246
++ G + G H+ + T + + NR ++ + ++ D+LH LG
Sbjct: 1389 SKLSGEVAKDVSVLGSN--HLVLATPVQFYRLSNRWRQRKAVQAVDLIIADDLHTLGANR 1446
Query: 247 RGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYC 306
+G + E++L ++++++++ ++++ +S+++ N + WL F P E +
Sbjct: 1447 KGSMYEVVLARMRFISAQKQTNLRIVALSSSVANGRDIGEWLGCAK-NNIFNFDPKERFN 1505
Query: 307 LVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQL 366
++ + +E K N + + L++ EG ++F ++ C +A
Sbjct: 1506 EIKEIELQASS---VERKDLVVSSFLNQTYDFLKLDS--EG-KKIVFVPSRKHCIEIA-- 1557
Query: 367 LSSTFCKIGCEGSEFGMILRSQLNSEHILEA-LEQLKNSPVGL-DQILQKTISFGVGYHH 424
EF + R+ L++ +L+ +E LK + D+ +++ +S+GVG ++
Sbjct: 1558 ------------IEF--VQRASLDNLQLLKVEIEDLKPYLKRVTDETIKEMLSYGVGCYY 1603
Query: 425 AGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYK-- 482
G+ ++ I+E F++ + +L+A SS V++ + + + + Y
Sbjct: 1604 EGMNATDKVIVEKMFENNVLSILLAAKETSSYAPAADGIVVLSTQEYDGKEHRYIDYSVN 1663
Query: 483 ---QMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEI 539
+M G + G +G +++ +E + K ++ + + PV+S + T + ++
Sbjct: 1664 DILEMVG-CCKNGLINQGNVLILTNECKLKF-YSKFLNEPAPVESYVPT------MVHDL 1715
Query: 540 IASNISC 546
S ISC
Sbjct: 1716 FLSEISC 1722
>UniRef50_UPI00006CB1FA Cluster: Type III restriction enzyme, res
subunit family protein; n=1; Tetrahymena thermophila
SB210|Rep: Type III restriction enzyme, res subunit
family protein - Tetrahymena thermophila SB210
Length = 2279
Score = 134 bits (323), Expect = 2e-29
Identities = 144/518 (27%), Positives = 240/518 (46%), Gaps = 67/518 (12%)
Query: 126 LFDCA-----NLVYSAPTSAGKTLVAEILTIKTV---LERQK-------KVIIILPFVSI 170
+FDCA N++ APT AGKT +A + + + ++R+ K++ + P ++
Sbjct: 567 VFDCAFNRTENMLVCAPTGAGKTNIALLAILNVIGKYIDRRGVVNLNKFKIVYLAPMKAL 626
Query: 171 VREKMFYLQNILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIE 229
V E + L GI V G SQ + + + I T EK + + + D E
Sbjct: 627 VGEMVLTFTQRLKYYGITVRELTGDSQLSKEQIDSTQLIIATPEKWDIITRKAGDRTYTE 686
Query: 230 DLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLN 289
+ +++DE+HLL DQ RG +LE L+ + +T ++ ++++G+SATLPN + +L
Sbjct: 687 LVRLLIIDEIHLLHDQ-RGPVLEALVARTIRMTEQTQENVRIVGLSATLPNFADVQNFLR 745
Query: 290 AE------------LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVL 337
+ F T+RP+PL++ + I E K++ + N+ +
Sbjct: 746 VKPLNKKENTGGMFFFDHTYRPVPLQQSFIG-----------ISEKKAAKRMLLTNEILY 794
Query: 338 KICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILE- 396
+ + + + IF ++ A L ++ +E + N+E IL+
Sbjct: 795 QKVEQRASKDQPLFIFVHSRRDTVKTANFLRQQAYQM----NELNKFVEEGSNAEEILKK 850
Query: 397 ALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSG----AIRVLVATST 452
A E ++N L++ I G HHAGL+ D+RDI+E F I+VLV T+T
Sbjct: 851 AAENIQNKD------LKEMIVQGFAVHHAGLSRDDRDIVENLFFQNRYQKTIKVLVCTAT 904
Query: 453 LSSGVNLPARKVIIR-----SPVFQK-QPINILSYKQMSGRAGRMGRDTKGESILICSEA 506
L+ GVN+PA VII+ SP K ++ QM GRAGR G D +GESI+I S
Sbjct: 905 LAWGVNMPASCVIIKGTQVYSPELGKWTELSPQDMIQMVGRAGRPGFDLRGESIVITSFQ 964
Query: 507 EKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEI 566
EK +L+ L I + A EI+ +S K E + + T L + +
Sbjct: 965 EKNYYLSLLNQQLPIESQFISQLPDQLNA--EIVLGTVSNIK-EAVDWLGYTYLYIR--M 1019
Query: 567 LSQNLILEDTLKELENYELIRIQNNHSENHYVATALGK 604
L + + +E EN L+ +++ + H AT L K
Sbjct: 1020 LRSPKVYHISDEEYENDRLL-VKHRANLIHSAATLLDK 1056
Score = 68.1 bits (159), Expect = 2e-09
Identities = 87/361 (24%), Positives = 168/361 (46%), Gaps = 50/361 (13%)
Query: 131 NLVYSAPTSAGKT---LVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGI 187
N+ APT +GKT +VA + KT E KKVI + PF SI + G
Sbjct: 1459 NIFLGAPTGSGKTACIIVAMLRIFKTYYEN-KKVIYVAPFESICQNMYKLFSKAFKHLGK 1517
Query: 188 RVEGFMGSQSPAGGMQNVH-VAICTIEKANSMINRLLDNGNI--EDLGAVVVDELHLLGD 244
+V G + + + I T E + + I +++ + DELH+L +
Sbjct: 1518 KVAILTGQTKTDNQIFTKYDIIISTPENWDINTRKWKKTQQIINKNIKLFIADELHMLNE 1577
Query: 245 QNRGYILELLLTKIKY----VTSKSDLL----------IQVIGMSATLPNLETLATWLNA 290
N Y E+++++++ ++SKS+ Q+IG++ ++ + + +A+W+ A
Sbjct: 1578 CNSTY--EVIVSRMRQFSSLLSSKSEGKQEGKKEVNHNFQIIGLATSVADYKEMASWIGA 1635
Query: 291 EL-----FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIK 345
F RP P++ + +++ K + I K G LK+ L++ +
Sbjct: 1636 NPSNTFNFSPDVRPYPVDLHITGFEQHHRK-ARLISMQKHMYQG-------LKLFLKSPQ 1687
Query: 346 EGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSP 405
+ +IF + + + A L + + + L+ +S I E +E L+
Sbjct: 1688 Q--QGIIFVSDRKQAKITAIDLQT----LAAGDNNPQKFLKVPYDS--IQEIVESLR--- 1736
Query: 406 VGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVI 465
D L++++ +GVG+ + G++ ER+++E ++SGAI+VL++T L +NL ++ VI
Sbjct: 1737 ---DLSLRQSLKYGVGFIYEGMSEQEREVVESLYQSGAIQVLISTYKLCWELNLHSQVVI 1793
Query: 466 I 466
I
Sbjct: 1794 I 1794
>UniRef50_Q4QE98 Cluster: ATP-dependent RNA helicase, putative; n=4;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 2368
Score = 132 bits (320), Expect = 5e-29
Identities = 128/457 (28%), Positives = 226/457 (49%), Gaps = 57/457 (12%)
Query: 126 LFDCA-----NLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVS 169
++DCA N++ SAPT AGKT VA + ++T+ + K++ + P +
Sbjct: 491 VYDCAFHSDENMLVSAPTGAGKTNVAMMAMLRTIAAARNPVTGVIDGHSLKMVYVAPMKA 550
Query: 170 IVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNI 228
+V+E + L S G+ V G + M + + T EK + + + ++ G
Sbjct: 551 LVQEVVRTFSKRLESLGLTVAELSGDAAMTQQQMATTQLIVTTPEKWDIVTRKSVELGVA 610
Query: 229 EDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTS-KSDLLIQVIGMSATLPNLETLATW 287
L +++DE+HLL ++ RG ++E ++ + + + I+++G+SATLPN +A +
Sbjct: 611 SLLKLLIIDEVHLLHNE-RGPVVEAIVARTMLQQQLRGEGGIRLVGLSATLPNHADVAAF 669
Query: 288 LNAE------LFITTFRPIPLEE-YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKIC 340
L +F +++RPIPLE+ YC + K K + A+S+ + D VL
Sbjct: 670 LQVNRQRGLFVFDSSYRPIPLEQTYCAI------KKMKGV--AQSAVMNLVAYDKVL--- 718
Query: 341 LETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQ 400
+ ++ V+IF ++ E A+ L + E + + N + ++EA
Sbjct: 719 -QAVQAEEQVMIFVHSRRETEHTARYLQKRAAE---ERRGYYFVRPDSDNHKALVEASSG 774
Query: 401 LKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLP 460
+ L + LQ+ + G G HHAGL+ DER+ +E F I+VLV TSTL+ GVNLP
Sbjct: 775 AGGAV--LRRSLQQLLPDGFGIHHAGLSRDERNTVEQLFADCHIKVLVCTSTLAWGVNLP 832
Query: 461 ARKVIIR-SPVF-----QKQPINILSYKQMSGRAGRMGRDTK-GESILICSEAEKKIGFN 513
A +VII+ + VF Q + ++ L QM GRAGR G G + +I S + +
Sbjct: 833 ANRVIIKGTRVFNGSKGQSELLSALDVLQMFGRAGRAGYGAAVGRATIITSPDDLHYYLS 892
Query: 514 LMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQE 550
++ L P++S + MR +++++ + I+ E
Sbjct: 893 VLNQQL-PIES------QMMRRVVDMLNAEITLGHVE 922
>UniRef50_A5E7Q8 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 2016
Score = 132 bits (320), Expect = 5e-29
Identities = 114/400 (28%), Positives = 203/400 (50%), Gaps = 51/400 (12%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLER---------QKKVIIILPFVSIVREKMFYLQNI 181
NL+ APT AGKT VA + ++ + Q K++ I P ++V E++ Q
Sbjct: 390 NLLICAPTGAGKTNVAMLTMLRAISNHRFNDAINKDQFKIVYIAPLKALVLEQVREFQRR 449
Query: 182 LSSS-GIRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
L+ G+ V G S + ++ +V I T EK + + ++ + + V++DE+
Sbjct: 450 LTPVFGLVVNELTGDASLSQQQIKETNVLITTPEKWDIITRE--NHEYLSLIKLVIIDEI 507
Query: 240 HLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LFI 294
HLL DQ RG +LE ++ +I ++++G+SATLPN +A ++ A F
Sbjct: 508 HLLHDQ-RGPVLESIIARINRDQENE---VRIVGLSATLPNYNDVAKFIGANEEGIFYFD 563
Query: 295 TTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFC 354
++RP PLE+ +V I + K+ ++ +++ + +T+K+ +++F
Sbjct: 564 LSYRPCPLEQKFVV-----------IKDQKALKKRLAIDEACYDLVHKTLKQNHQLIVFV 612
Query: 355 MTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHIL-EALEQLKNSPVGLDQILQ 413
+N S A+ L + E + L ++ ++ IL + Q+ N+ LQ
Sbjct: 613 HLRNETVSTAEYLINRLLD-----QELDLNLVAEDSTREILSQESAQVTNAK------LQ 661
Query: 414 KTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQ 472
+ + G+G HHAGL+ +ER ++E F G ++VLV+T+TL+ GVNLPA VII+ + V+
Sbjct: 662 RILGSGIGAHHAGLSKEERTLVEDLFAQGHLKVLVSTATLAWGVNLPAHTVIIKGTEVYS 721
Query: 473 KQPINILSYK-----QMSGRAGRMGRDTKGESILICSEAE 507
+ + + QM GRAGR D GE ++I ++ E
Sbjct: 722 PESGSWMQLSPQDVFQMLGRAGRPRYDKNGEGVIITTQDE 761
Score = 37.1 bits (82), Expect = 3.6
Identities = 27/136 (19%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 177 YLQNILSSSGIRVEGFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVV 235
Y+Q S+ + G + G + + E S++ R ++ +G ++
Sbjct: 1270 YVQRFAKSNEANIFKLTGDLKIDVQGYNKSQIIVGKPEYFYSLVRRWKTLKSVRSIGLLI 1329
Query: 236 VDELHLLGDQNRGYILELLLTKIKYVTSK--SDLLIQVIGMSATLPNLETLATWLNAELF 293
+D+LHL+ + N Y E LLT+++ + S+ + ++++ +S L ++ + TWL+ +
Sbjct: 1330 LDDLHLM-EANPVY--EFLLTRVRLLRSQYSHETSLRLVAISYPLMDVRDVCTWLDIKKA 1386
Query: 294 ITTFRPIPLEEYCLVE 309
P + E+ +++
Sbjct: 1387 NIVNFPASVREHDILQ 1402
>UniRef50_Q5A0Z8 Cluster: Potential spliceosomal U5 snRNP RNA
helicase; n=1; Candida albicans|Rep: Potential
spliceosomal U5 snRNP RNA helicase - Candida albicans
(Yeast)
Length = 1987
Score = 130 bits (315), Expect = 2e-28
Identities = 135/455 (29%), Positives = 229/455 (50%), Gaps = 67/455 (14%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLE---------RQKKVIIILPFVSIVREKMFYLQNI 181
NL+ APT AGKT VA + ++T+ + K++ I P ++V+E+M Q
Sbjct: 391 NLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQMREFQRR 450
Query: 182 LSSS-GIRVEGFMGSQSPAGG-MQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDEL 239
L+S G+ V G S + + + + T EK + + + D ++ + +++DE+
Sbjct: 451 LTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITRK--DPSYVKLVKLMIIDEI 508
Query: 240 HLLGDQNRGYILELLLTKI--KYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----L 292
HLL D+ RG +LE L+++ K T+ SD I+++G+SATLPN +A ++ A+
Sbjct: 509 HLLHDE-RGPVLESLVSRAIRKSETTGSD--IRIVGLSATLPNYADVAKFIRAKPEGLFY 565
Query: 293 FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
F ++RP PLE+ + + E K+ + N++ +++++ ++I
Sbjct: 566 FDASYRPCPLEQVYIG-----------VKEQKAIKRIAAMNEACYDRMHQSLQDRHQLII 614
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F ++ + A+ L K+ + I+ + E + + E + N L
Sbjct: 615 FVHSRKETFTTAKYLME---KLDID------IVEQEGVKEILKQEGESMSNPK------L 659
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR----- 467
++ I G G HHAGLT +R ++E F G +RVLV+T+TL+ GVNLPA VII+
Sbjct: 660 KEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPAHTVIIKGTETY 719
Query: 468 SPV----FQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVK 523
SP Q P +IL QM GRAGR D GE I+I S+ E + ++ L P++
Sbjct: 720 SPESGAWVQLSPQDIL---QMLGRAGRPRYDKNGEGIIITSQDEVQYYLAILNQQL-PIE 775
Query: 524 SCIETKEKYMRAI-LEIIASNISCSKQ--ELLLYT 555
S + K + I EI+A +I+ ++ E L YT
Sbjct: 776 S--QLIHKLVDNINAEIVAGSITTIEEGIEWLTYT 808
Score = 50.4 bits (115), Expect = 4e-04
Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
N+ + GKT++AE+ + ++ +++ I P +V + SS +
Sbjct: 1224 NVFIGSSKGDGKTVLAELAILNHWNNKKGRIVYINPCQELVDKLFKKWSTFFSSYEKEIN 1283
Query: 191 GFMGS-QSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGY 249
G+ + + + H+ + T E+ N + R + + D+LHL+G
Sbjct: 1284 VLSGNLREDSASVNQSHLILATPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVH-- 1341
Query: 250 ILELLLTKIKYVTSK-SDLLIQVIGMSATLPNLETLATWL 288
E+L+T+++ +TS+ D ++++ +S+ + N +A W+
Sbjct: 1342 -YEMLVTRVRMLTSQWDDYKLRIVALSSPVLNSRDIAEWI 1380
>UniRef50_Q9XWI5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1798
Score = 130 bits (314), Expect = 3e-28
Identities = 116/420 (27%), Positives = 197/420 (46%), Gaps = 46/420 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK----------KVIIILPFVSIVREKMFYLQN 180
NL+ APT AGKT +A + + T+ E Q K+I I P ++ E
Sbjct: 110 NLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESFGK 169
Query: 181 ILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLL-DNGNIEDLGAVVVDE 238
L+ G++V+ G +Q + + + + T EK + + + DN I + +++DE
Sbjct: 170 RLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDE 229
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE------L 292
+HLL D+ RG ++E L+ + S I+++G+SATLPN +A +L
Sbjct: 230 VHLLHDE-RGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLFF 288
Query: 293 FITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
F FRP+PL + + K + L N C D V+ + +K G VL+
Sbjct: 289 FDGRFRPVPLTQKFIGTRKAGNFRDNLTL---MDNV---CYDEVV----DFVKRGHQVLV 338
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK--NSPVGLDQ 410
F T+N L + FC + + L S ++A + + + +
Sbjct: 339 FVHTRNGTAKLGE----AFCARASVLGQMDLFLPKDRASSKYIQADKAINICRNRAQISP 394
Query: 411 ILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SP 469
+ Q+ G+G HHAGL +R ++E F G + VL T+TL+ GVNLPA V+I+ +
Sbjct: 395 LFQR----GMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTD 450
Query: 470 VFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKS 524
VF + + +L +Q+ GRAGR + +G I+I + +K + M+ +P++S
Sbjct: 451 VFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTR-DKIDKYLTMLVHQNPIES 509
Score = 75.4 bits (177), Expect = 1e-11
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
D+ L+ T+ FG+G HHAGL+ ER I+E F I+VL+AT+TL+ G+N PA VI++
Sbjct: 1242 DENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKG 1301
Query: 469 PVF------QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
+ + + QM GRAGR D +++ +A+K +
Sbjct: 1302 TEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVE 1361
Query: 523 KSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLL 560
S + ++ A EI A I SKQ ++ Y T L
Sbjct: 1362 SSLLPVLPNHVNA--EISAGTID-SKQAIVEYLSKTYL 1396
Score = 74.5 bits (175), Expect = 2e-11
Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 136 APTSAGKTLVAEILTIKTVLERQ-KKVIIILPFVSIVREKMF-YLQNILSSSGIRVEGFM 193
APT +GKTL AE+ + + + KV+ I P S+VRE++ + + G RV
Sbjct: 983 APTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVS 1042
Query: 194 GSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILE 252
G +P + + I T EK + + + +G +V+DE+HLLG +RG +LE
Sbjct: 1043 GDVTPDPEELAASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLG-VDRGAVLE 1101
Query: 253 LLLTKIKYVTSKSDLL---IQVIGMSATLPNLETLATWLN-----AELFITTFRPIPL 302
+++++K +T +S + ++++G+S L N +A WL F + RP+P+
Sbjct: 1102 AIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVPI 1159
>UniRef50_Q7S600 Cluster: Putative uncharacterized protein
NCU09793.1; n=2; Sordariales|Rep: Putative
uncharacterized protein NCU09793.1 - Neurospora crassa
Length = 1453
Score = 130 bits (314), Expect = 3e-28
Identities = 118/408 (28%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK---KVIIILPFVSIVREKMFYLQNILSSSGI 187
N+V SAPT +GKT + E+ K L+R K++ P ++ EK + S G+
Sbjct: 185 NVVVSAPTGSGKTAILELAICKLALDRCNENFKIVYQAPTKALCSEKARDWEKKFSHMGL 244
Query: 188 RVEGFMG--SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAV-VVDELHLLGD 244
+ G SQ+ + + + T EK +S+ + D+ + L + ++DE+H+L D
Sbjct: 245 KCAELTGDTSQAEMRRVGEASIIVTTPEKWDSITRKWQDHRRLLQLVELFLIDEVHILKD 304
Query: 245 QNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNA-----------ELF 293
RG LE +++++K + + ++ + +SAT+PN + +A WL E+F
Sbjct: 305 V-RGATLEAVVSRMKTIGAN----VRFVALSATVPNSDDIAKWLGRNHTTQQLPAYREVF 359
Query: 294 ITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIF 353
FRP+ L+++ Y+ NG + + D L L + LIF
Sbjct: 360 GEEFRPVKLQKFVYG----YECNGNDFIFDRFL-------DGKLPTLLSKHNQRKPTLIF 408
Query: 354 CMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQ 413
C T+ CES A L+ + S+ NS + K PV L + LQ
Sbjct: 409 CFTRKSCESTATKLAEHASGL------------SETNSLWPIPT----KRIPV-LSRELQ 451
Query: 414 KTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF-- 471
+ + FGV +HHAGL + +R IE F +G + V+ TSTL+ GVNLP V+++ V
Sbjct: 452 EIVRFGVAFHHAGLDVQDRIAIEQHFLNGELSVICCTSTLAVGVNLPCHTVVMKGTVAFM 511
Query: 472 --QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMG 517
+ Q + L QM GRAGR DT +I++ A K N++ G
Sbjct: 512 DDKLQEYSDLEIMQMLGRAGRPQFDTSATAIILTRAANKLRYENMVSG 559
>UniRef50_O13799 Cluster: Uncharacterized helicase C17H9.02; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized helicase
C17H9.02 - Schizosaccharomyces pombe (Fission yeast)
Length = 1030
Score = 130 bits (314), Expect = 3e-28
Identities = 130/431 (30%), Positives = 200/431 (46%), Gaps = 64/431 (14%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVE 190
+++ SA TSAGKT++AE I L+ +++VI P S+ +K + +LS G
Sbjct: 142 SVLVSAHTSAGKTVIAEY-AIAQALKNRQRVIYTSPIKSLSNQKY---RELLSEFGD--V 195
Query: 191 GFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNI-EDLGAVVVDELHLLGDQNRGY 249
G M G + A C I + L N I ++ V+ DE+H + D++RG
Sbjct: 196 GLM-----TGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGV 250
Query: 250 ILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLN------AELFITTFRPIPLE 303
+ E L + I+ I +SATLPN A W++ + T +RP PL+
Sbjct: 251 VWEETLILLPDA-------IRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQ 303
Query: 304 E----------YCLVE--NKYYDKNGKYILEA-----KSSNYGVSCNDSVLKICLETI-- 344
Y LV+ NK+ +N K +LE + NY S LE I
Sbjct: 304 HFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIIN 363
Query: 345 ----KEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQ 400
+++FC +K CE A F K+ +E +L +E A+ Q
Sbjct: 364 MVLSNRYDPIIVFCFSKKECEINAH----QFGKLDLNDTE-----NKELVTEIFDSAINQ 414
Query: 401 LKNSPVGLDQI--LQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVN 458
L GL Q ++ + G+G HH+GL ++++E F+ G +R+L AT T S G+N
Sbjct: 415 LSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLN 474
Query: 459 LPARKVII-RSPVFQKQPINILS---YKQMSGRAGRMGRDTKGESILICSEA-EKKIGFN 513
+PAR V+ ++ F L+ Y QMSGRAGR G DTKG SI+I ++ +++
Sbjct: 475 MPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC 534
Query: 514 LMMGDLDPVKS 524
LM G D + S
Sbjct: 535 LMNGQADVLNS 545
>UniRef50_Q4MYU4 Cluster: ATP-dependent RNA helicase, putative; n=3;
Theileria|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 2249
Score = 130 bits (313), Expect = 4e-28
Identities = 127/443 (28%), Positives = 219/443 (49%), Gaps = 43/443 (9%)
Query: 156 ERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGG-MQNVHVAICTIEK 214
+++ VI I P S+V E+ GI V G S + +QN + + T EK
Sbjct: 564 DKEFTVIYISPMKSLVLEQTQSFNLRFKDYGISVHELTGEMSMSRTQIQNTQIIVTTPEK 623
Query: 215 ANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGM 274
+ + + G +E + V++DE+HLL D+ RG ++E L+T+ + L +++G+
Sbjct: 624 WDVVTRK---EGMLERVELVIIDEVHLLHDK-RGSVIESLVTRTFMHDKVTGLKTRIVGL 679
Query: 275 SATLPNLETLATWLNAE----LFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGV 330
SATLPN +A +L + F +RP+PLE++ Y K L+ Y +
Sbjct: 680 SATLPNYGDIAKFLRVDEGLFYFGNHYRPVPLEQH------YIGIKEKKALK----QYNI 729
Query: 331 SCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLN 390
+ N+ + ++ I E VL+F ++ ++++ KI E + + ++ +
Sbjct: 730 T-NELTYEHVIKNIGEK-QVLVFVHSRKETYRTSKMILD---KIVSE-DKLELFIKDVAS 783
Query: 391 SEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVAT 450
E + E +KNS L++ + FG+G HHAGL +R ++E F +++LV+T
Sbjct: 784 REILTSESEHIKNSN------LKELLPFGIGIHHAGLVRSDRKLVEDLFSDKHLQLLVST 837
Query: 451 STLSSGVNLPARKVIIR-SPVFQKQ-----PINILSYKQMSGRAGRMGRDTKGESILICS 504
+TLS GVNLPA VII+ + ++ + + LS +QM GRAGR DT G+ I+I
Sbjct: 838 ATLSWGVNLPAGVVIIKGTQIYVPEQGSWDELCPLSVQQMMGRAGRPQFDTFGKGIII-- 895
Query: 505 EAEKKIGFNLMMGDLD-PVKSCIETKEKYMRAILEIIASNISCSKQEL-LLYTDCTLLSA 562
A +K+ + L + + P++S + K + EI+ NI+ +Q L + T +
Sbjct: 896 TANEKLQYYLSLNNQQLPIESQLIAKLPEV-LNSEIVLRNITNLQQALEWIKTTYLYVRV 954
Query: 563 QKEILSQNLILED-TLKELENYE 584
+K L ED L E +N E
Sbjct: 955 KKNPLLYGFETEDEELDEDDNME 977
Score = 52.0 bits (119), Expect = 1e-04
Identities = 31/135 (22%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKK--VIIILPFVSIVREKMFYLQNILSSSGIR 188
N++ SAP +G+ AE+ ++T+L+ ++K +++++PF +++R++ L +
Sbjct: 1445 NVLLSAPYGSGRFTCAELAVLRTLLQLKEKATIVVVVPFENLLRKRFKRLVSRFGEVCSV 1504
Query: 189 VEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
E + + + + + T + N ++NR N I+++ +V + + L D+ G
Sbjct: 1505 AELTGDFKQDFQVVLSNTITVTTAKNYNHLLNR-YKNKLIQNVNLLVFEGVEFLSDELYG 1563
Query: 249 YILELLLTKIKYVTS 263
+EL LT+++Y T+
Sbjct: 1564 VSIELCLTQLRYYTT 1578
>UniRef50_Q81EV0 Cluster: DNA polymerase I; n=1; Bacillus cereus ATCC
14579|Rep: DNA polymerase I - Bacillus cereus (strain
ATCC 14579 / DSM 31)
Length = 802
Score = 128 bits (309), Expect = 1e-27
Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 32/312 (10%)
Query: 1183 EKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFN 1242
EK + G RI + YS FT TGR+ PN QNVPR DN EF
Sbjct: 494 EKYLNFMSG-RIHAGYSPFTETGRLNSFNPNGQNVPRP----------DND------EFK 536
Query: 1243 CRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGE 1302
RN F PG ++ D+ E+RL+ S D +T + + D+ + A+ + E E
Sbjct: 537 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAE 596
Query: 1303 VDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEM------EASLFMDSFERTYPAIRVFT 1356
+ R AK +GI YG L M E + +++ + Y I +
Sbjct: 597 IVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQ 656
Query: 1357 KSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCS 1416
+ ++ E + QG+V+T+ G R LP I S R +AERQA NT +QGSAADI K
Sbjct: 657 RKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQNE 716
Query: 1417 IEDGINS-----FNPKPRLILQMHDELIYEVHETNK--SRFISLMKSVMEDTVELKVPLP 1469
I + I + +I Q+HDE+I+E+ + + +K VME P+P
Sbjct: 717 IYESIGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVP 776
Query: 1470 VKLK--CGYTWG 1479
++ + GY WG
Sbjct: 777 IEAEGSVGYRWG 788
>UniRef50_A2DMG9 Cluster: DNA polymerase I family protein; n=1;
Trichomonas vaginalis G3|Rep: DNA polymerase I family
protein - Trichomonas vaginalis G3
Length = 709
Score = 128 bits (309), Expect = 1e-27
Identities = 108/345 (31%), Positives = 164/345 (47%), Gaps = 43/345 (12%)
Query: 1148 TRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRI 1207
T VL N PI ++ +R L+ +++ L +K+ SEG T TGRI
Sbjct: 402 TNSLVLDDINHPIVELIKKFRSLSKLVSNWL-SFDQKSD--SEGILHPWILVLSTATGRI 458
Query: 1208 TMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRL 1267
+ PNLQN+P +F++ S N R F M+S DY QLE+R+
Sbjct: 459 SSVFPNLQNIP----------SFNDEQS-----LNIRKFFLPPTKKTMISVDYSQLELRI 503
Query: 1268 LTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTL 1327
L H S+D L + D S+ A + V +D+R++AK Y IYG
Sbjct: 504 LAHLSDDKKLKDLCNVDQGDIHSMIAKMI-FNKNNVTEDMRKEAKTNIYATIYGK----- 557
Query: 1328 SQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHIT 1387
V M +D F+ IR F + + E + +GF++T SG+ R+LP+I
Sbjct: 558 ----KVENMSGISVIDIFQ----GIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKV 609
Query: 1388 SRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEV-HETN 1446
S + ER +VNT+IQG+AAD K A+ ++ I N P I+Q+HDE I+E E
Sbjct: 610 SDKMRDERISVNTIIQGTAADFVKFALINV---IKQTNLIP--IIQIHDEWIFETDEEIG 664
Query: 1447 KSRFISLMKSVMEDT-----VELKVPLPVKLKCGYTWGALDEVAL 1486
FI L+ + + + L V +PVK+ G ++G L E+ +
Sbjct: 665 TLSFIDLIHKIKKSSECSYEFGLNVKIPVKISAGKSFGELSEILI 709
>UniRef50_Q4DJ49 Cluster: ATP-dependent RNA helicase, putative; n=4;
Trypanosoma|Rep: ATP-dependent RNA helicase, putative -
Trypanosoma cruzi
Length = 2240
Score = 128 bits (308), Expect = 2e-27
Identities = 113/428 (26%), Positives = 203/428 (47%), Gaps = 49/428 (11%)
Query: 127 FDCA-----NLVYSAPTSAGKTLVAEILTIKTVLE----------RQKKVIIILPFVSIV 171
FDCA N++ APT AGKT +A + ++ V R+ K++ + P ++V
Sbjct: 424 FDCAFGSDENMLVCAPTGAGKTNIAMMAMLRAVKNATARSGAINLRELKMVYVAPMKALV 483
Query: 172 REKMFYLQNILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIED 230
+E + N L G+ V G S + + + + + T EK + + + ++ G
Sbjct: 484 QEVVRTFSNRLEQLGLTVVELSGDSNANQAQLSDAQLIVTTPEKWDVVTRKSVELGVASL 543
Query: 231 LGAVVVDELHLLGDQNRGYILELLLTKIKYVTS-KSDLLIQVIGMSATLPNLETLATWLN 289
L +++DE+HLL ++ RG +LE ++ + + + I+++G+SATLPN +A++L
Sbjct: 544 LKLLILDEVHLLHNE-RGPVLEAIVARTMLQQQLRGETDIRIVGLSATLPNYADVASFLQ 602
Query: 290 AE------LFITTFRPIPLEE-YCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLE 342
+ +F ++FRPIPL++ +C ++ + + +N N L+
Sbjct: 603 VDRQRGLFVFDSSFRPIPLQQTFCAIK------------KVRGTNQVAVMNLVTYDKLLQ 650
Query: 343 TIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLK 402
G ++F ++ E + E +R SE +L
Sbjct: 651 AAMSGEQSMVFVHSRKDTEYTVMYMIRRI----LEEKRTHYFVRPGSESEQLLREAAIDP 706
Query: 403 NSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPAR 462
+ P L LQ+ + G HHAG++ ER+++E F +R LV TSTL+ GVNLPA
Sbjct: 707 SRP--LRPSLQQMLPMGFAVHHAGMSRGEREVVERLFADRHVRALVCTSTLAWGVNLPAN 764
Query: 463 KVIIR-SPVF-----QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMM 516
+VII+ + VF + + ++ L QM GRAGR+G + + + AE + ++
Sbjct: 765 QVIIKGTRVFNAAKGETELLSALDVLQMFGRAGRVGFGSSLGRAAVITSAEDLHYYLSVL 824
Query: 517 GDLDPVKS 524
D P++S
Sbjct: 825 NDQLPIES 832
>UniRef50_Q4P954 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1297
Score = 128 bits (308), Expect = 2e-27
Identities = 109/416 (26%), Positives = 190/416 (45%), Gaps = 27/416 (6%)
Query: 120 LCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLE--RQKKVIIILPFVSIVREKMFY 177
LC KV N+V SAPT +GKT++ E+ ++ + + + + + P ++ E+
Sbjct: 188 LCLPKVYGSAENVVLSAPTGSGKTVIFELALVRMLSKDAENARAVYLAPTKALCSERTRD 247
Query: 178 LQNILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNI-EDLGAVV 235
N S G V G S + + I T EK +S+ + +N +I + ++
Sbjct: 248 WSNRFGSVGCAVTEITGDSVYGLHVARKSRLIITTPEKWDSLTRKWDENSSILSTIRLLL 307
Query: 236 VDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFIT 295
+DE+H+L + RG LE+++T+ T ++ + +SAT+PNL +A W+ L +
Sbjct: 308 IDEVHILNESQRGARLEVVVTR----TRSRGHQVRFVAVSATVPNLADVAAWIGPNLSLQ 363
Query: 296 TFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICL--------ETIKEG 347
+ ++ D+ L+ Y + ++ + L ET G
Sbjct: 364 RRDRALSNKQSAEVFQFGDEYRPCPLQKHVYGYPKAKDEFAFQAYLNHKLFELIETHAAG 423
Query: 348 CSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVG 407
L+FC T+ A +++ CK E +L + + N +
Sbjct: 424 RPCLVFCATRRSTLQAANMIAEA-CKKAKEAGGRATLLSHDTHGSRSM-------NGAIF 475
Query: 408 LDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR 467
D L S G+ +HHAGL++ +R +E AF +G I VL T+TL++G+NLPA VIIR
Sbjct: 476 DDPDLTALASLGIAFHHAGLSILDRRKVEQAFLAGKIAVLCCTTTLATGINLPAYCVIIR 535
Query: 468 -SPVFQKQ--PINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLD 520
+ + Q ++ L QM GRAGR D G ++++C + + L+ G D
Sbjct: 536 GTKQYDGQWCEMSELDLIQMMGRAGRPQFDRSGIAVIMCEDTMQAHYRELVSGSRD 591
>UniRef50_A4RXZ9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1060
Score = 127 bits (307), Expect = 2e-27
Identities = 131/474 (27%), Positives = 223/474 (47%), Gaps = 68/474 (14%)
Query: 97 PIEISKKYEERGITEMFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTV-- 154
P++ ++ ++ + + L L NT+ F V SAPT +GKT V E+ + +
Sbjct: 18 PLDTARAFDFKYFNSIQSEMLEFLVNTRRSF-----VMSAPTGSGKTTVFELAMLAALRG 72
Query: 155 ----------LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGM-- 202
++KVI + P ++V EK + L GI G G +
Sbjct: 73 PNATEGGLSAARGRRKVIYLAPSRALVSEKAREWRERLGRIGITFAELTGDNDFGGDVWG 132
Query: 203 --QNVHVAICTIEKANSMINRLLDNGNIE---DLGAVVVDELHLLGDQNRGYILELLLTK 257
+NV + T EK + + + G + D+ AV++DE+HL+GD RG LE ++++
Sbjct: 133 EIENVDAILATPEKFDRVTRLDANRGGMSFFSDVAAVLIDEVHLIGDI-RGGCLEAIVSR 191
Query: 258 IKYVTSKSDLL------IQVIGMSATLPNLETLATWLNAE-----LFITTFRPIPLEEYC 306
+K ++ S LL ++ +SAT+PN+E LA WL A +F FRP+ L+ Y
Sbjct: 192 LKLLSKSSALLQSHLRNVRFGAVSATIPNIENLANWLGANRDGTFVFGEEFRPVKLQTYV 251
Query: 307 LVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQL 366
+ D ++ + V + E + G L+F ++N + A+
Sbjct: 252 ---RSFPDTTSDFL-------FNKYLKQKVFAVIREFYR-GKQTLVFLGSRNDAQQTAKQ 300
Query: 367 LSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAG 426
L + +F + QL S+ +LEA Q +N + L + I+ GV +HHAG
Sbjct: 301 L------VVDSRRQF---VNPQL-SQFLLEASMQAQN------KHLAECITAGVAFHHAG 344
Query: 427 LTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARK-VIIRSPVFQ----KQPINILSY 481
L +R+++EG F S AI VL +TSTL+ GVNLPA V+ + ++ + I++ +
Sbjct: 345 LERGDRELVEGLFCSRAIMVLCSTSTLAVGVNLPAYLCVVAGTDIYDGGGAYKEISMDTL 404
Query: 482 KQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRA 535
QM GRAGR DT+G ++++ + + L+ G S + +Y+ A
Sbjct: 405 LQMIGRAGRPQFDTEGVAVVMTKNSLRSRYEGLVHGKYPLESSLGSSLPEYLNA 458
>UniRef50_Q1ARA6 Cluster: DNA-directed DNA polymerase; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: DNA-directed DNA
polymerase - Rubrobacter xylanophilus (strain DSM 9941 /
NBRC 16129)
Length = 582
Score = 126 bits (304), Expect = 5e-27
Identities = 98/360 (27%), Positives = 161/360 (44%), Gaps = 28/360 (7%)
Query: 1123 GYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLT 1182
G N NS + + + TR L + + P + ++ +R+L L L T
Sbjct: 245 GPRLNLNSPQQIMEAFRSIGIELPDTRMWTLLTVDHPAARDLLEYRELQKKLGTYLE--T 302
Query: 1183 EKACIYSEGDRIMSSYSTFTC-TGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEF 1241
+ ++ + RI +S+ TGR+ PN+Q +P DE
Sbjct: 303 YEGFVHPKTGRIHASFLQCRVPTGRLACTNPNVQQIPH---------------EDEF--- 344
Query: 1242 NCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEG 1301
R F A G+V+V ADY Q+E+R+L S D + D+ + AA+ VP+
Sbjct: 345 --RRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFVEAFRRGEDLHRVTAATMFGVPKE 402
Query: 1302 EVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIE 1361
EV + R AK++ +G+ YG G ++L+ L E A +D + TY ++ +
Sbjct: 403 EVTKEQRSAAKRINFGLAYGRGPRSLAAQLGTDEERARRLIDEYFATYGRVQRYLNETAN 462
Query: 1362 ECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGI 1421
++G + TLSGR R ++ R +R+A+N IQG++ADIAK A+ I +
Sbjct: 463 RALKEGALRTLSGRLRKFGRTRGLSSAERGALKREAMNYPIQGTSADIAKLALIFIHSEL 522
Query: 1422 NSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVE---LKVPLPVKLKCGYTW 1478
+ RLI +HDE + E E S ++S M E +VP+ V++ W
Sbjct: 523 RDLD--ARLINCIHDEFVVECAEEQAEEAASRVRSAMVRAGERLLKRVPVEVEVAVSREW 580
>UniRef50_A2ERS7 Cluster: Type III restriction enzyme, res subunit
family protein; n=9; Trichomonas vaginalis G3|Rep: Type
III restriction enzyme, res subunit family protein -
Trichomonas vaginalis G3
Length = 1961
Score = 126 bits (304), Expect = 5e-27
Identities = 131/468 (27%), Positives = 220/468 (47%), Gaps = 67/468 (14%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVII-----------------ILPFVSIVRE 173
N++ APT AGKT VA +LTI + E QK ++I I P ++ E
Sbjct: 171 NMLVCAPTGAGKTNVA-LLTI--LHEIQKHIVIQPGIPPHLDDSDFLIVYITPMKALALE 227
Query: 174 KMFYLQNILSSSGIRVEGFMGSQSPAG-GMQNVHVAICTIEKANSMINRLLDNGNIEDLG 232
++ L I V + G S + H+ + T EK + + +N L
Sbjct: 228 ITDKFRSALKHLKIIVHEYTGDTSLTSLELDRSHILVATPEKWDVATRKAGENAPAARLK 287
Query: 233 AVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE- 291
+++DE+HLL D+ RG +LE L+ + + +I+++G+SATLPN +A +L
Sbjct: 288 LLIIDEIHLLQDE-RGPVLEALVARTLRQVEQQQSMIRIVGLSATLPNYTDVANFLRVND 346
Query: 292 ----LFITTFRPIPLEEYCL-----VENKYYDKNGKYI-LEAKSSNYGVSCNDSV-LKIC 340
F +RP+PL + + K +++ L ++ ++ D V + +
Sbjct: 347 QGMFFFGPEYRPVPLAMTIVGAKDTTKTKTVEQSEVLNELLSQGKEKDIAQIDVVAIDLL 406
Query: 341 LETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQ 400
E I +G VL+F T+ + AQL++ KI ++ + S+
Sbjct: 407 REIIDDGQQVLVFVHTRQETSNFAQLIARNI-KIQVSKDVSKLLTKRNCQSQ-------- 457
Query: 401 LKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLP 460
L+ +S G+G HHAGL +R +E F++ +I++LV T+TL+ GVNLP
Sbjct: 458 -----------LRDALSKGIGIHHAGLPRQDRIFVEQLFRTNSIQILVCTATLAWGVNLP 506
Query: 461 ARKVIIR-SPVFQK-----QPINILSYKQMSGRAGRMGRDTKGESILICSE-AEKKIGFN 513
A VII+ + V+ + + I IL QM GRAGR DT G +ILI E K +
Sbjct: 507 AHTVIIKGTQVYNQDRGGFEDIGILDVHQMFGRAGRPQFDTSGHAILITQEKIVSKYLSS 566
Query: 514 LMMGDLDPVKSCIETK-EKYMRAILEIIASNISCSKQELLLYTDCTLL 560
L DP++S + + E ++ A EI ++ S+++ L++ T +
Sbjct: 567 LFYS--DPIESKFQKRLEDFLNA--EIALGTVT-SRRDALIWARYTFM 609
Score = 87.8 bits (208), Expect = 2e-15
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 409 DQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRS 468
DQ L +S G+G HHAGL + +I+E F SG +++LVAT+TL+ GVNLPA V+I+
Sbjct: 1261 DQTLSHCLSLGIGLHHAGLVSSDCEIVEELFASGKMKLLVATATLAWGVNLPAHFVVIKG 1320
Query: 469 PVF------QKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPV 522
F Q P + +QM GRAGR DT+G +++C E K + L
Sbjct: 1321 TEFHDAKTCQYVPYSSTEMQQMMGRAGRPQFDTEGIVMILCEEGRKDFLKRFINSPLPVE 1380
Query: 523 KSCIETKEKYMRAILEIIASNISCSKQELL 552
+ E ++ A EI + I SK+ L+
Sbjct: 1381 SNLFEHASEHANA--EIASGRIK-SKKSLM 1407
Score = 64.9 bits (151), Expect = 2e-08
Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTV-LERQKKVIIILPFVSIVREKMFYLQNILSSSGIRV 189
NL+ APT+AGKT +AE+ + ++K + + P +IV E+ +Q+ G ++
Sbjct: 1011 NLLICAPTAAGKTSIAELAICRLFSTHPEQKAVYLAPLKAIVTER---VQDWRMKFGDKL 1067
Query: 190 EGFMGSQSP-AGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRG 248
G +P + + + + T EK +++ + ++ +G VV+DE HLLG +RG
Sbjct: 1068 IELTGEFTPDSNAIAKASLIVATPEKWDAVSRGFVVRRFVQTVGLVVIDEAHLLG-TDRG 1126
Query: 249 YILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPLE 303
+I+E ++ ++K + +K ++ IG+S L N +A +L F R +PL+
Sbjct: 1127 HIIEAVVDRMKSMPTK----VRFIGLSTCLSNPLDVAEFLGVSRRGTYNFPPQMRAVPLK 1182
Query: 304 EY 305
+
Sbjct: 1183 TF 1184
>UniRef50_A2PYH4 Cluster: Helicase-like protein HFM1; n=21;
Deuterostomia|Rep: Helicase-like protein HFM1 - Homo
sapiens (Human)
Length = 1435
Score = 126 bits (303), Expect = 6e-27
Identities = 126/490 (25%), Positives = 226/490 (46%), Gaps = 59/490 (12%)
Query: 45 SENKQKHVNRRFVNTASNNSLLNKTAEGKLTASK-----EVRNTQKIQSKKLKDWGLPIE 99
S +KQK V TA+N ++ EG A + + Q++ L E
Sbjct: 207 SNSKQKFQYSANVFTANNAFSASEIGEGMFKAPSFSVAFQPHDIQEVTENGLGSLKAVTE 266
Query: 100 ISKKYEERGITEMFDW--QLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLE- 156
I K+ R I + F + + +L+ N V APT +GKT+V E+ + ++E
Sbjct: 267 IPAKF--RSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEV 324
Query: 157 ----RQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGS--QSPAGGMQNVHVAIC 210
K++ + P ++ ++ + G+ + G +Q+ H+ +
Sbjct: 325 PLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMT 384
Query: 211 TIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLL-- 268
T EK +SM + DN ++ + +++DE+H++ D+NRG LE++++++K V S S L
Sbjct: 385 TPEKWDSMTRKWRDNSLVQLVRLLLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKN 444
Query: 269 ------IQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILE 322
++ + +SAT+PN E +A WL+ RP + + E+ K K +L
Sbjct: 445 TSTAIPMRFVAVSATIPNAEDIAEWLS-----DGERPAVCLK--MDESHRPVKLQKVVLG 497
Query: 323 AK-SSN-----YGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGC 376
SSN + ++ N + + ++ + L+FC T+ + A +L
Sbjct: 498 FPCSSNQTEFKFDLTLNYKIASV-IQMYSDQKPTLVFCATRKGVQQAASVL--------V 548
Query: 377 EGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIE 436
+ ++F M + + + L++ S D L+ + G YHHAG+ L +R ++E
Sbjct: 549 KDAKFIMTVEQK-------QRLQKYAYSV--RDSKLRDILKDGAAYHHAGMELSDRKVVE 599
Query: 437 GAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQK----QPINILSYKQMSGRAGRMG 492
GAF G + VL TSTL+ GVNLPA V+I+S + + + QM GRAGR
Sbjct: 600 GAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQ 659
Query: 493 RDTKGESILI 502
DT ++++
Sbjct: 660 FDTTATAVIM 669
>UniRef50_Q5CTJ2 Cluster: U5 small nuclear ribonucleoprotein 200kDa
helicase, Pre-mRNA splicing helicase BRR2 2; n=2;
Cryptosporidium|Rep: U5 small nuclear ribonucleoprotein
200kDa helicase, Pre-mRNA splicing helicase BRR2 2 -
Cryptosporidium parvum Iowa II
Length = 2184
Score = 125 bits (301), Expect = 1e-26
Identities = 135/517 (26%), Positives = 230/517 (44%), Gaps = 71/517 (13%)
Query: 48 KQKHVNRRFVNTASNNSLLNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISKKYEER 107
+ ++ + F+ T NS N + + E+ N I K LK P EI Y +
Sbjct: 1195 QSSYIQKEFLQT---NSEFNSISLNSIPDITELLNIPPIPIKSLK---YP-EIIDYYNNK 1247
Query: 108 GITEMFDWQLACLCNTKVLF-DCANLVYSAPTSAGKTLVAEILTIKTVL----------- 155
I + Q +LF N+ APT +GKT+VAEI + +
Sbjct: 1248 KIFFLNPVQSQLF---HILFYSDENIFLGAPTGSGKTMVAEIAIFRALFADLDSKISISK 1304
Query: 156 -----ERQKKVIIILPFVSIVREKM----FYLQNILSSSGIRVEGFMGSQSPAGGMQNVH 206
+++ K++ I P S+ E+ F N L + + + G SQ+ ++
Sbjct: 1305 LKPESKKKSKIVYIAPLKSLANERFNDWKFLFSNTLGLNVVLITG--SSQTSLLELEKAS 1362
Query: 207 VAICTIEKANSMINR--LLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTS- 263
+ I T EK S R ++D+ ++ DE+HL+G + RG ++E L+ K ++++
Sbjct: 1363 IIISTPEKWESFTRRWWAKSRSFVQDIKLIIFDEIHLIGQEPRGSVVETLVCKTRFISHF 1422
Query: 264 ----KSDLLIQVIGMSATLPNLETLATWLNAEL-----FITTFRPIPLEEYCLVENKYYD 314
+ I+ + +S +L N + L++WL F RP+P Y + + +
Sbjct: 1423 IEKYTVNKKIRSLSLSTSLSNAKELSSWLEVGASGYYNFPPEIRPVPCTVYI---SGFQE 1479
Query: 315 KNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKI 374
KN Y + N + KI + K+ V+IF ++ + A LS C
Sbjct: 1480 KN--YCPRMATMNRPI-----YNKILTHSPKK--PVIIFVASRRQTRITAMSLSH-MCY- 1528
Query: 375 GCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDI 434
CEG I Q +S L + + D+ L++T+ G+G HHAGL+ +R++
Sbjct: 1529 -CEGQPNRFINTEQKDS----FGLSLAGSIRMAKDKSLKQTLESGIGIHHAGLSESDRNL 1583
Query: 435 IEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVF------QKQPINILSYKQMSGRA 488
+E F +G I+++VATSTL+ GVN PA II+ + Q I QM GR+
Sbjct: 1584 VENLFLNGMIQIVVATSTLAWGVNFPAHFAIIKGTEYFDAKLGQYIDYPITDVLQMVGRS 1643
Query: 489 GRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSC 525
GR D+ + ++ EA+K + + D P++SC
Sbjct: 1644 GRPQYDSHSVACIMTLEAKKPF-YKRFLYDSLPLESC 1679
Score = 77.8 bits (183), Expect = 2e-12
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 12/131 (9%)
Query: 380 EFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAF 439
E + + + + ++L+AL NS + + +FG+G HHAGL +R + E F
Sbjct: 604 EMNKVNKKEFSGNYLLKALRDCDNSSI------KDLFNFGLGIHHAGLISSQRKLSEALF 657
Query: 440 KSGAIRVLVATSTLSSGVNLPARKVIIR-SPVFQK-----QPINILSYKQMSGRAGRMGR 493
G IRVL+ T+TL+ GVNLPAR VII+ + V+ + + IL Q+ GRAGR
Sbjct: 658 SQGLIRVLITTATLAWGVNLPARHVIIKGTNVYDSKKGSFKDLGILDILQIFGRAGRPQF 717
Query: 494 DTKGESILICS 504
+ G + +I S
Sbjct: 718 EKLGSAYMITS 728
Score = 68.1 bits (159), Expect = 2e-09
Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 160 KVIIILPFVSIVREKMFYLQNILSSSGIRV-EGFMGSQSPAGGMQNVHVAICTIEKANSM 218
K++ I P S+V E L I+V E + P + H+ + EK + M
Sbjct: 304 KIVFIAPMKSLVSEITRKYSVALQELRIKVVEVTSDAAVPKEVIDRNHIIVTVPEKLDIM 363
Query: 219 INRLLDNGN------IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVI 272
+ N L V++DE+H+LGD+ RG +E ++++I Y S I+++
Sbjct: 364 TRTYTFDDNTGQVNLFNSLQCVILDEIHMLGDE-RGPSVEAIVSRILYNVEISQRPIRLV 422
Query: 273 GMSATLPNLETLATWLN-----AELFITTFRPIPLEEYCL-VENKYYDKNGKYILEAKSS 326
G+SATLPN E AT+LN A F RP PLE+ + V K D K E +
Sbjct: 423 GLSATLPNWEDFATFLNVNKNDAFFFSQALRPTPLEKTIIGVNEKRVDIEKK--REIRKK 480
Query: 327 NYGVSCNDSVL 337
N S DS L
Sbjct: 481 NDKTSNQDSSL 491
>UniRef50_Q16RG8 Cluster: ATP-dependent DNA helicase mer3; n=2;
Aedes aegypti|Rep: ATP-dependent DNA helicase mer3 -
Aedes aegypti (Yellowfever mosquito)
Length = 1199
Score = 125 bits (301), Expect = 1e-26
Identities = 118/433 (27%), Positives = 208/433 (48%), Gaps = 46/433 (10%)
Query: 116 QLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVL-------ERQKKVIIILPFV 168
++ L +L+ +LV SAPT +GKT + E+ ++ ++ E ++I I P
Sbjct: 52 EIQSLVMDDMLYTDKSLVVSAPTGSGKTAIFELAMVRLLMKLEDSRYEGDYRMIYIAPIK 111
Query: 169 SIVREKMFYLQNILSSSGIRVEGFMGSQSPAG--GMQNVHVAICTIEKANSMINRLLDNG 226
++ EK + G++ G + + ++ + T EK NS+ R N
Sbjct: 112 ALCAEKFADWKGKFEPLGVKTAEVTGDTEMKDFWDLPDCNLILTTPEKWNSITRRWRQNV 171
Query: 227 N-IEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVT-------SKSDLL--IQVIGMSA 276
N + + V++DE+H+L DQ RG +LE ++++++ + +S ++ +++I +SA
Sbjct: 172 NFVRMIRLVMIDEVHILNDQFRGPVLEAVVSRMRSIHRFVEGDGGESAVVDPMRIIALSA 231
Query: 277 TLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSS-NYGVSCNDS 335
T PN+ LA W+ E T F I + +K+ G Y + S + ++ N
Sbjct: 232 TAPNVADLAAWVG-EANTTCFYNISESRRPIKIDKHV--LGYYCDPSTSPFRFDMNLNYK 288
Query: 336 VLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHIL 395
+ ++ + G L+FC T+ ES ++ L + Q+++ I+
Sbjct: 289 LFEVICK-YSSGRPSLVFCSTRKATESASKHLVEQHSL---------RLTPDQVSALQIV 338
Query: 396 EALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSS 455
QL+N L++ + GVGYHHAGL++ +R +IE AF++G I VL TS L+
Sbjct: 339 A--NQLQNGD------LKRRLLAGVGYHHAGLSIADRQLIEDAFRAGRIPVLCCTSGLAM 390
Query: 456 GVNLPARKVIIRSPV----FQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIG 511
GVNLPA VII+S + + S QM GRAGR DT G ++++ +
Sbjct: 391 GVNLPAHLVIIKSTQMYTDYGMEEYPESSIFQMIGRAGRPQFDTFGVAVIMTQRENVQKY 450
Query: 512 FNLMMGDLDPVKS 524
L G + P++S
Sbjct: 451 ERLATGSV-PIES 462
>UniRef50_Q74ZT5 Cluster: AGR113Wp; n=2; Saccharomycetaceae|Rep:
AGR113Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 2154
Score = 125 bits (301), Expect = 1e-26
Identities = 113/400 (28%), Positives = 191/400 (47%), Gaps = 49/400 (12%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQK-----------KVIIILPFVSIVREKMFYLQ 179
N++ APT AGKT VA + ++ + + K KV+ I P ++V+E++ Q
Sbjct: 519 NMLLCAPTGAGKTNVAVLAILRLLSKYYKAETKSFNTSKFKVVYIAPLKALVQEQVREFQ 578
Query: 180 NILSSSGIRVEGFMG-SQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDE 238
L G++V G S + + + T EK + + L+ + + +++DE
Sbjct: 579 RRLQQYGLKVAELTGDSNLTRQQIMEAQILVSTPEKWDVITRNGLNRHYTKLVQLLIIDE 638
Query: 239 LHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE-----LF 293
+HLL D+ RG ++E ++ +++ ++ +V+ +SATLPN +A +L F
Sbjct: 639 VHLLHDE-RGPVIESIVARLE---TQGSTETRVVALSATLPNYTDIAEFLRVPSDGLFYF 694
Query: 294 ITTFRPIPL-EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLI 352
+FRP PL +++C I E S + N + LE++ E V++
Sbjct: 695 DASFRPCPLAQQFC------------GITETNSVKRVNAMNQVCYEKVLESVAENHQVIV 742
Query: 353 FCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQIL 412
F ++ A L E + S IL+ + +N D+
Sbjct: 743 FVHSRKDTARTAIWLRDKLL----EEDKISSFAPQDAGSAEILK--RETENIT---DKSF 793
Query: 413 QKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIR-SPVF 471
+ G G HHAGL+ D+R + E F G I+VLV+TSTL+ GVNLPA VII+ + ++
Sbjct: 794 GDVVQHGFGIHHAGLSRDDRSLAEDLFADGLIKVLVSTSTLAWGVNLPAHTVIIKGTEMY 853
Query: 472 QKQP---INILSYK--QMSGRAGRMGRDTKGESILICSEA 506
Q +++ S + QM GRAGR DT GE I+I +++
Sbjct: 854 SPQKGSWVSLSSQEVLQMLGRAGRPRYDTFGEGIIITNQS 893
Score = 66.5 bits (155), Expect = 5e-09
Identities = 71/360 (19%), Positives = 170/360 (47%), Gaps = 36/360 (10%)
Query: 131 NLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQN-ILSSSGIRV 189
N+ A +GKT +AE+ + + + + + I P + + +N L+ +G +V
Sbjct: 1365 NVFIGACKGSGKTAMAELALLSHWRDGKGRAVYICPSQEKIDFLVKDWRNRFLNVAGGKV 1424
Query: 190 EGFMGSQ--SPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNR 247
+ + + + H+ + T E+ + + R NI+ L +++D+LH++
Sbjct: 1425 INKLTLELTNNLRTLAQSHLILATPEQFDLLSRRWKRRKNIQTLELLILDDLHMISSDLP 1484
Query: 248 GYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAE---LFITTF--RPIPL 302
G E +++++ ++ + + ++++G+S +L N + WL A+ +F +F R +PL
Sbjct: 1485 GARYENIISRMLFIRGQLETALRIVGLSTSLANGRDVGEWLGAKKATIFNFSFHERVMPL 1544
Query: 303 EEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCES 362
+ + +K ++++ ++E + + ++ +SV+ G SV++F ++ C
Sbjct: 1545 QIHLQSFHKMHEES---LIETMAKSAFLTVQNSVI--------AGSSVMLFVPSRKNCVH 1593
Query: 363 LAQLLSSTFCKIGCEGSEFGMILRSQ-LNSEHILEALEQLKNSPVGLDQILQKTISFGVG 421
++ LL++ G+E+ LR Q L E L +E D L++++ G+G
Sbjct: 1594 ISVLLAT-----AAAGTEYS--LRPQKLGLETHLPKVE---------DGNLRESLKHGIG 1637
Query: 422 YHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSY 481
+ + G++ ++ I+E A+K I + T L +I+ + ++ + ++Y
Sbjct: 1638 FFYHGMSSSDKAIVEQAWKQKLILCIAITRDLCVMAPFAETVIIMGTQYYEPREHRYVNY 1697
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,893,949
Number of Sequences: 1657284
Number of extensions: 59625632
Number of successful extensions: 181096
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 737
Number of HSP's that attempted gapping in prelim test: 177131
Number of HSP's gapped (non-prelim): 2860
length of query: 1486
length of database: 575,637,011
effective HSP length: 110
effective length of query: 1376
effective length of database: 393,335,771
effective search space: 541230020896
effective search space used: 541230020896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 79 (35.9 bits)
- SilkBase 1999-2023 -