GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002418-TA|BGIBMGA002418-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR001098|DNA-directed DNA polymerase, IPR014001|DEAD-like helicases,
N-terminal, IPR010995|Rad51, N-terminal, IPR002298|DNA polymerase A,
IPR011545|DEAD/DEAH box helicase, N-terminal
         (1486 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    33   0.042
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         33   0.042
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   2.1  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    26   8.5  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    26   8.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 431 ERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGR 490
           ER++    FKSG + VL+ATS  + G+++     ++   +    P +I  Y    GR GR
Sbjct: 461 EREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDL----PKSIDDYVHRIGRTGR 516

Query: 491 MGRDTKGESILICSEAEKKIGFNLM 515
           +G   +  S     EA++ +  +L+
Sbjct: 517 VGNKGRATS-FYDPEADRAMASDLV 540


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 439 FKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMG 492
           F+     +L+ TS L  G+ LP   ++IR       P N  SY Q  GRA   G
Sbjct: 607 FRMHECNLLIGTSVLEEGIELPKCNLVIR----WNSPANYRSYAQCKGRAKAPG 656


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/65 (32%), Positives = 25/65 (38%)

Query: 43  EKSENKQKHVNRRFVNTASNNSLLNKTAEGKLTASKEVRNTQKIQSKKLKDWGLPIEISK 102
           E +  KQ+     F  T      LNK  E       E R TQ   S K+KD    I   K
Sbjct: 723 ELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIADGK 782

Query: 103 KYEER 107
            + ER
Sbjct: 783 GHRER 787


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
            doublesex protein protein.
          Length = 265

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAV 1398
            C+  G    L G +RY    T H      TAERQ V
Sbjct: 44   CRNHGLKIGLKGHKRYCKYRTCHCEKCCLTAERQRV 79


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doublesex
            protein protein.
          Length = 622

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 1363 CKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAV 1398
            C+  G    L G +RY    T H      TAERQ V
Sbjct: 44   CRNHGLKIGLKGHKRYCKYRTCHCEKCCLTAERQRV 79


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,757
Number of Sequences: 2123
Number of extensions: 54035
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 6
length of query: 1486
length of database: 516,269
effective HSP length: 73
effective length of query: 1413
effective length of database: 361,290
effective search space: 510502770
effective search space used: 510502770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)