GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002418-TA|BGIBMGA002418-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR001098|DNA-directed DNA polymerase, IPR014001|DEAD-like helicases,
N-terminal, IPR010995|Rad51, N-terminal, IPR002298|DNA polymerase A,
IPR011545|DEAD/DEAH box helicase, N-terminal
         (1486 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       30   0.12 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 439 FKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGE 498
           FKSG + +LVAT+  + G+++     +I   +    P  I  Y    GR GR+G   +  
Sbjct: 497 FKSGRMSILVATAVAARGLDIKNVSHVINYDL----PKGIDEYVHRIGRTGRVGNRGRAT 552

Query: 499 S 499
           S
Sbjct: 553 S 553



 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 125 VLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVII 163
           ++ +  +L+  A T +GKT    +  I T+LER   +++
Sbjct: 229 IIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVV 267


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 202 MQNVHVAICT---IEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKI 258
           M+N     CT   IEK     N  L+N  +++L  ++ D  H+    N    ++ LL   
Sbjct: 184 MENTENKSCTDSDIEKYKMFCN--LENVKLKELRIILEDIKHINTRHNTKNGMKTLL--- 238

Query: 259 KYVTSKSDLL-IQVIGMSATLPNLET-LATWLNAELFITTFRPIPLEEYCLVENKYYDKN 316
               S++D+  ++ I     +  + T L  W N +L   T+ PI     C    + +++N
Sbjct: 239 ----SETDIWEVEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEFERN 294

Query: 317 GKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVL 351
              +LE+         N+  ++  L  +K G   L
Sbjct: 295 RLQLLESFKRKVNFYPNNQDIEKFLNYLKRGGKTL 329


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
            variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 1059 ISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQD 1112
            I  +Q N +Y+SY N I+ E K + +  +       V+   V +     +D  D
Sbjct: 445  IENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSD 498


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 21  LDNCFDNSFALQSSLVVVKEYLEKSENKQKHVNRRFV 57
           LD+C ++++ L+ S+  +K  +   +  + H N+  V
Sbjct: 172 LDDCDNDTYGLEMSVDFIKGSISNIDGAEDHCNKTAV 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,008
Number of Sequences: 429
Number of extensions: 15915
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 6
length of query: 1486
length of database: 140,377
effective HSP length: 67
effective length of query: 1419
effective length of database: 111,634
effective search space: 158408646
effective search space used: 158408646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)