GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002417-TA|BGIBMGA002417-PA|IPR010733|Protein of unknown
function DUF1308
         (404 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   5.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   9.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 297 DFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQ 337
           DF+     L   + K++  ++ ++++ YP D     +YPR+
Sbjct: 6   DFDTRTVRLRNRVGKRKGNVVADILSRYPSDGEASYEYPRE 46


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 282 LFEGKKLVCCETAWNDFEKI 301
           L+E +KL    T W +FE+I
Sbjct: 149 LYEARKLANVVTDWVNFERI 168


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 71  RHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDIV 105
           RH GS+++    P + A+ ++   +NC     DIV
Sbjct: 140 RHDGSVIKNQGMPTMEAIARSGIWENCRAAYEDIV 174


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,288
Number of Sequences: 317
Number of extensions: 3256
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 404
length of database: 114,650
effective HSP length: 58
effective length of query: 346
effective length of database: 96,264
effective search space: 33307344
effective search space used: 33307344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)