GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002417-TA|BGIBMGA002417-PA|IPR010733|Protein of unknown
function DUF1308
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    29   0.89 
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    29   0.89 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    28   2.7  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   2.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   2.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   6.2  
SPCC553.11c |||transcription factor TFIIA complex small subunit ...    26   8.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   8.3  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 20  FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 59
           +G ++   ++P  H +G   +QRK+ Q +E +  LEKS N
Sbjct: 79  YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 20  FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 59
           +G ++   ++P  H +G   +QRK+ Q +E +  LEKS N
Sbjct: 79  YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 1   MSKINHAEDLVEVVKDKIKFGENLIIQL--QPIQHVE-GVMKLQRKIKQEIEFL-KRLEK 56
           +S+  HA DLV  +++  K+G+   I +   P  HV+  V +L +   ++I FL +++E 
Sbjct: 125 VSEFEHAVDLVRYIRE--KYGDYFCIGVAAYPEGHVDSNVPELSKDPLRDIPFLIEKVEA 182

Query: 57  SKNFKIEQL 65
             +F I Q+
Sbjct: 183 GADFIITQI 191


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 225 HGIDHSEIKTLNLDVTTMMAYVSNMTNGHHN 255
           HGI H  + T+ L V T   Y  ++TN HHN
Sbjct: 216 HGI-HIIVGTILLLVATYNIYTYHLTNTHHN 245


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 67  CSNLRHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDI 104
           C+  +HL  + + +L  YV  +C  F+I N N  I+ +
Sbjct: 196 CTLSKHLFLLGDFSLISYVKVLCGVFNIPNYNAFILSV 233


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 46  QEIEFLKRLEKSKNFKIEQLA--CSNLRHLGSMVECALRPY 84
           + +E LK   KS++ ++ Q    CSNLR+L S++     P+
Sbjct: 216 ETLEPLKHRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPH 256


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 1   MSKINHAEDLVEVVKDKIK-FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLK 52
           M+++  A  L  V  +++K F +N  + L  I+ VEG +++ R ++ + EFLK
Sbjct: 904 MARVKKA--LPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFLK 954


>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 137 SILDQADDYLKCSRLYPCMYQPPKVVFEFMSGIEENLANKLRAVGIVVKGEI 188
           S+ D  DD +   ++ P +    KV+F F   + E LA K+R+  +  KG +
Sbjct: 14  SLTDALDDLISQGKISPQLAM--KVLFNFDKSMTEALAEKVRS-RLTFKGHL 62


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 42  RKIKQEIEFLKRLEKSKN-FKIEQLACSNL 70
           +K+KQ  EFL+++E   N F   +  CSNL
Sbjct: 674 QKLKQNPEFLRKMEVYNNQFSKNKELCSNL 703


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,415
Number of Sequences: 5004
Number of extensions: 66194
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 9
length of query: 404
length of database: 2,362,478
effective HSP length: 74
effective length of query: 330
effective length of database: 1,992,182
effective search space: 657420060
effective search space used: 657420060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)