GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002417-TA|BGIBMGA002417-PA|IPR010733|Protein of unknown
function DUF1308
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    32   0.72 
SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   2.9  
SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)               29   8.9  

>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 269  WEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLG 306
            WEA R      R+  E ++LV C   WN+F K +E LG
Sbjct: 1477 WEAVRKNAESRRRQAE-ERLVLCREYWNEFRKFVEWLG 1513


>SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 39  KLQRKIKQEIEFLKRLEKSKNFKIEQLACSNLRHLGSMVECALRPY 84
           K  R++K+EI  LKRLEK    K     C  +R  G   EC LR +
Sbjct: 108 KATRRLKKEIANLKRLEKKSRKK-----CKTMRDCGEN-ECCLRRF 147


>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 43  KIKQEIEFLKRLEKSKNFKIEQLACS--NLRHLGSMVECALRPYVL 86
           +I  +IE LKR+  +  F +E+ +CS  NL+   +MV  AL PYV+
Sbjct: 243 EIHDDIEVLKRMGMA--FGLEKKSCSVENLKTSRTMVPKALEPYVV 286


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 6   HAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLK-RLEKSKNFKI 62
           + +  V+ V   IKF ENL+  L+PI  +  ++K  + I   ++  K  L K K  +I
Sbjct: 701 YIDKFVDFVNKLIKFVENLVKPLRPINLINKILKFAKDIVNRLKNWKWLLGKIKKIQI 758


>SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 3   KINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGV-MKLQRKI 44
           + ++A++L++V++D +   + +II+ +P+  VE V +KL + I
Sbjct: 518 RAHYAQELLQVIRDTLDLEQPIIIRAEPLLRVEDVQIKLLKGI 560


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 5   NHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRK-IKQEIEFLK-RLEKSKNFKI 62
           N    L   +KDK +  ENL  + + ++     +K  +K ++ EI  LK +LE SK+   
Sbjct: 336 NEILQLQNQLKDKERMCENLAAEAKQLEASNNALKRDKKALEDEINLLKMQLESSKH--A 393

Query: 63  EQLACSNLRHLGSMVECA 80
            +++   +R L + +E A
Sbjct: 394 NEVSQERIRELLAQLERA 411


>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
          Length = 76

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 269 WEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKR 313
           W   RP + ++R+  E   +  C T W+       T  GP E+ R
Sbjct: 28  WPTWRPSRSVVRRSSE-LSMARCRTVWSHIGDETTTFAGPRERHR 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,943
Number of Sequences: 59808
Number of extensions: 471414
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 11
length of query: 404
length of database: 16,821,457
effective HSP length: 84
effective length of query: 320
effective length of database: 11,797,585
effective search space: 3775227200
effective search space used: 3775227200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)