GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002417-TA|BGIBMGA002417-PA|IPR010733|Protein of unknown
function DUF1308
         (404 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   3.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   4.9  
DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor...    24   6.4  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 224 NHGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAERPVKPILRKLF 283
           +H + H++ K    D          +   H N+    + +    + +A+  + P  ++ F
Sbjct: 372 SHLLLHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVAP--TPKAKTHICPTCKRPF 429

Query: 284 EGKKLVCCETAWNDFE----KILETLGGPMEKKRTVLLKEMITVYPDDFGGEDD 333
             K  +    A +D E    K +E L    +KK  +  +E I    +D+ GE+D
Sbjct: 430 RHKGNLIRHMAMHDPESTVSKEMEALREGRQKKVQITFEEEIYKGEEDYEGEED 483


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 3    KINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQ-EIEFLKRLEKSKNFK 61
            KIN  ED VE  +  I+ G +   QL+     E   KL+ ++++ ++   K  E S + K
Sbjct: 936  KINSMEDEVEAAQSAIRKGNDERTQLE-----EEANKLREELEEMKLAIEKAHEGSSSIK 990

Query: 62   IEQLACSNLRHLGSM 76
             E +A       G M
Sbjct: 991  KEIVALQKREAEGKM 1005


>DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor 24
           protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 274 PVKPILRKLFEGKKLVCCETAWNDFEKIL-ETLGGPME 310
           P+  I    +E +K+V     W DFE +  ET G  +E
Sbjct: 85  PILIIPLMWYESRKVVSVVNGWVDFETVYRETSGRALE 122


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,159
Number of Sequences: 2123
Number of extensions: 14206
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 404
length of database: 516,269
effective HSP length: 66
effective length of query: 338
effective length of database: 376,151
effective search space: 127139038
effective search space used: 127139038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)