GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002417-TA|BGIBMGA002417-PA|IPR010733|Protein of unknown
function DUF1308
         (404 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...   109   3e-24
Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical pr...    31   1.9  
AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical ...    29   4.5  
U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alph...    29   5.9  
AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeri...    29   5.9  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    29   7.8  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score =  109 bits (263), Expect = 3e-24
 Identities = 104/406 (25%), Positives = 177/406 (43%), Gaps = 20/406 (4%)

Query: 8   EDLVEVVKDKIKFGENLIIQLQ--PIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIEQL 65
           +DL     +KIK  +  + +L     Q +E + +++R + +EIE L+   + K  +   +
Sbjct: 7   DDLERQRIEKIKEVQEAVAKLTGAKFQKLENLQRMERMLNKEIELLQNATR-KALETHLV 65

Query: 66  ACSNLRHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDIVGDQGNTWTKVIARNPXXXXX 125
            C+   +   + E        AV KTF  DN + + +DIV  + N W K++ R P     
Sbjct: 66  TCNYAFYKSIIDEVEEMENATAVLKTFKRDNVS-VTVDIVMKEPNVWIKLVNR-PAKTVL 123

Query: 126 XXXXXXXXXARSILDQADDYLKCSRLYPCMYQPPKVVFEFMSGIEENLANKLRAVGIVVK 185
                       ++ Q   +L  SR     +  P++   F +G+   +A KL   GIVV 
Sbjct: 124 IEYRDGKRNG-DVIAQIKQHLFVSR----RFNRPQIRIYFRNGVLAEMAQKLIRHGIVVI 178

Query: 186 GEILPNSIVXXXXXXXXXXXXXXXXXNCINMQ------SKIPELNHGIDHSE--IKTLNL 237
           GE +  S                      +        + IP L      SE  +  LNL
Sbjct: 179 GEHVDKSDPSLRGKWNEELIERLGEEEDSDWDEVDEDAASIPTLPSSQSQSESTLPRLNL 238

Query: 238 DVTTMMAYVSNMTN-GHHNFIFKQEVLTQQCSWEAERPVKPILRKLFEGKKLVCCETAWN 296
           D++ +M  VSNM   G  N+ FK+E++ +    E  +P K  + +  +G  L+ CE A+ 
Sbjct: 239 DISAVMLLVSNMCEPGGVNYQFKEEMINKHVECERLKPAKAEVLEKLKGHHLIMCELAYR 298

Query: 297 DFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNFG 356
              +I++ +GGP EKKR   L + I    D    E     +   ++G   + +K +F+  
Sbjct: 299 RVAEIVKNVGGPTEKKRFEELSKTIERVQDQPSDEIGRVVKLRNIKGITSI-TKRVFSCA 357

Query: 357 HRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSARRI 402
              K  TV+AN+ F+  +  + + +       R LTE KE +A+ I
Sbjct: 358 EVTKTTTVTANQKFLTHSRAKHIYFDVIEIPPRPLTEQKEATAKVI 403


>Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical
          protein C49C3.7 protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 4  INHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIE 63
          + + ED  ++VK++    +N   +    ++VE ++K   ++K+E+EFLKR +    FK++
Sbjct: 41 LTYTEDQYKIVKEESTIYKNRF-ETAAAKNVE-LLKATDELKKELEFLKR-QPGNQFKVD 97

Query: 64 Q 64
          +
Sbjct: 98 K 98


>AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical
           protein T11F1.2 protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 22  ENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLE 55
           E  +++L  + H+ G + ++  + ++IEFL +LE
Sbjct: 370 EGFVVKLTKVSHLFGSLTIRNTLLEDIEFLSQLE 403


>U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alpha
          subunit protein 10 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 38 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 64
          MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13 MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


>AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeric
          G protein alphasubunit protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 38 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 64
          MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13 MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 236 NLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAERPVKPILRKLFEGKKLVCCE 292
           ++DV+  MA +  M + HH+ + ++E L   C     +  +  +RKL + +K V  E
Sbjct: 312 SMDVSVNMASIDQMKDEHHHNLMREEELL-GCEAGRRKQSEEEVRKLSDERKRVIYE 367


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,193,977
Number of Sequences: 27539
Number of extensions: 365804
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 8
length of query: 404
length of database: 12,573,161
effective HSP length: 83
effective length of query: 321
effective length of database: 10,287,424
effective search space: 3302263104
effective search space used: 3302263104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)