GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002416-TA|BGIBMGA002416-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   0.69 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    24   2.1  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    24   2.1  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    24   2.8  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   2.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    23   3.7  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   6.4  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    22   8.5  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    22   8.5  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    22   8.5  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 53  NAAFKTYDFISSSLETPEPHQ 73
           N   K YDF+S SL+ P  H+
Sbjct: 434 NPGDKIYDFLSKSLQRPVAHE 454


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 6  GELKSQVPYELPALPSNDRISYLFKYY 32
          G LKS   Y+    PS D   +LFKY+
Sbjct: 13 GSLKSTEEYDQFFCPSIDIPKFLFKYW 39


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 23  DRISYLFKYYWNCGVKATF 41
           DR   L+KY   CG+K+ F
Sbjct: 326 DRCIELYKYCEKCGIKSAF 344


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 26  SYLFKYYWNCGVKATF-----RFLVELPTHTSNAAFKTYDF 61
           SY+F++ WN    A F     R + +LP+ T+N    + +F
Sbjct: 169 SYMFQFVWNHQALAIFPDLSVRQIYKLPSPTANIVPLSQEF 209


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 23  DRISYLFKYYWNCGVKATFRFLVELPTHTSNAAF 56
           D   YL+++ W+ G+       V LP+  SN  F
Sbjct: 428 DIFVYLWRHSWSNGIDYAKWISVALPSMLSNKVF 461


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 821

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 2  SPYVGELKSQVPYELPALPSNDRISYLFKYY 32
          SP+V + KS +PYE   +P    + ++FK +
Sbjct: 44 SPFVEKGKSVIPYEKSQIPV---LRFIFKRF 71


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 47  LPTHTSNAAFKTYDF-ISSSLETPEPHQEKD 76
           +PTH++   F  YDF I++    P P  +++
Sbjct: 333 VPTHSAPPGFVPYDFPITNDKMYPSPSFQEE 363


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 129

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 47 LPTHTSNAAFKTYDFISSSLET 68
          +P +  N AFK YD +    ++
Sbjct: 47 IPVNNRNLAFKAYDAVKQKYDS 68


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
          Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 46 ELPTHTSNAAFKTYDFISSSLETPEPHQEKD 76
          +L +  +NA F  +  IS++ + P P + +D
Sbjct: 62 QLHSKAANAIFNRFKSISNNGQFPTPEEIRD 92


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 129

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 47 LPTHTSNAAFKTYDFISSSLET 68
          +P +  N AFK YD +    ++
Sbjct: 47 IPVNNRNLAFKAYDAVKQKCDS 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,474
Number of Sequences: 5004
Number of extensions: 14066
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 10
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)