GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002416-TA|BGIBMGA002416-PA|undefined
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0313 + 17404002-17406410                                         27   1.5  

>12_02_0313 + 17404002-17406410
          Length = 802

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1   MSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCGVKATFRFLVEL 47
           ++    ELK+  PYE+P LP ++    +F  Y   G KA  R L+++
Sbjct: 304 LTKIASELKTLEPYEVPKLP-HEECRKIFVRYAFRGEKAKDRELLKI 349


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,347
Number of Sequences: 37544
Number of extensions: 73021
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 1
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)