GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002416-TA|BGIBMGA002416-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    26   2.8  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    26   2.8  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    26   2.8  
U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z93381-5|CAB07608.1|  716|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 9   KSQVPYELPALPSND-RISYLFKYYWNCGVKATFRFLVELPTHTSNAAFKTYDFISSSLE 67
           K Q   ++    SND +  +LFK   +   K   ++L+   TH S      +  +SSS +
Sbjct: 432 KQQNEIKIKPSSSNDQKRHWLFKMRESAQTKKNLKYLIAKRTHQSMQCQSEFKCVSSSNQ 491

Query: 68  T 68
           T
Sbjct: 492 T 492


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 37   VKATFRFLVELPTHTSNAAFKTYDFISSSLETPEP 71
            ++++ + +++  T T +AAFK   F  SS +TP+P
Sbjct: 1535 LESSRKSMMKRKTETLDAAFKKRFFALSSEQTPDP 1569


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 37   VKATFRFLVELPTHTSNAAFKTYDFISSSLETPEP 71
            ++++ + +++  T T +AAFK   F  SS +TP+P
Sbjct: 1535 LESSRKSMMKRKTETLDAAFKKRFFALSSEQTPDP 1569


>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 37  VKATFRFLVE-LPTHTSNAAFKTYDFISSSLETPE 70
           ++A+ RF+ + +P H S    ++ D   S+L TP+
Sbjct: 465 IRASHRFVTDKMPNHGSETYKESADMAKSALPTPQ 499


>Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical
           protein ZK938.5 protein.
          Length = 498

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 11  QVPYELPALPSNDRISYLFKY 31
           + P EL   P NDRI YL  Y
Sbjct: 139 ECPPELKLAPINDRIKYLHYY 159


>Z93381-5|CAB07608.1|  716|Caenorhabditis elegans Hypothetical
           protein F28G4.5 protein.
          Length = 716

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 25  ISYLFKYYWNCGVKATFRFLV 45
           +SY+F ++W+C  +  F  LV
Sbjct: 645 LSYIFAFFWSCLFEVPFLKLV 665


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 13  PYELPALPSNDRISYLFKYYWNCGVKATFRFLV 45
           P +L     N+R   +F + W+  V+  F FLV
Sbjct: 124 PVKLAYNAMNERTGDIFAHTWSLSVEIQFYFLV 156


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
          protein Y48G1BM.6 protein.
          Length = 618

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 40 TFRFLVELPTHTSNAAFKTYDFISSSLET 68
          TF+  + LP  TS AA++T+   +++L T
Sbjct: 57 TFKNKLHLPHTTSAAAYRTHTLHTNTLHT 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,257
Number of Sequences: 27539
Number of extensions: 70406
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)