GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002415-TA|BGIBMGA002415-PA|IPR006172|DNA-directed DNA
polymerase B, IPR012337|Polynucleotidyl transferase, Ribonuclease H
fold, IPR004578|DNA polymerase (pol2), IPR006133|DNA polymerase B,
exonuclease, IPR006134|DNA polymerase B region
         (1644 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    27   0.80 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    27   1.4  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    25   5.7  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    24   7.5  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    24   7.5  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 468 KKNERVNNPTNTDSNIDTSEIDEINVSRETA 498
           K+++R   P N D+N DTS++D+ N S E +
Sbjct: 75  KRSKRSKRP-NGDTNGDTSQVDDQNESLEAS 104


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 712 NLSRDQKPFEKVLETESIENWRQLLFLQKYATQDDYKPDTLRTLLAGNSRYVIQPVVRPP 771
           NL R+Q     +   E IE   Q++  +  + Q   K  T   ++   SR++     R  
Sbjct: 178 NLLREQSRTRPITPKE-IERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRN 236

Query: 772 TSEQVKKWINEQKALQLLSQFSSEQA 797
            S+Q  + +NE     L + + SE+A
Sbjct: 237 FSKQASEILNEYFYSHLSNPYPSEEA 262


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 777 KKWINEQKALQLLSQFSSEQAISKNMDDFNNSQALGLNEDEINSSIVSIENCESADFL 834
           + WI+ +    L  Q   EQ + K++  F+N+      +   +SS  S +     D L
Sbjct: 216 RPWIHNETIYSLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAMLDLL 273


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 873 HFLKKSLTGIIVVDSSSRKYLDGCVFN-VPVIYVSNEIETIDEVIKLVNIHDPDIMCGYE 931
           H +   L   ++V  + +  L+ C  +    I ++N ++ IDEV+K  + H+ +++    
Sbjct: 77  HLVLDYLDEFLIVALAFQVILNSCFCDPAKWIRLNNNLQYIDEVLKNRDSHETNLLRNVS 136

Query: 932 IE 933
           ++
Sbjct: 137 VQ 138


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 873 HFLKKSLTGIIVVDSSSRKYLDGCVFN-VPVIYVSNEIETIDEVIKLVNIHDPDIMCGYE 931
           H +   L   ++V  + +  L+ C  +    I ++N ++ IDEV+K  + H+ +++    
Sbjct: 77  HLVLDYLDEFLIVALAFQVILNSCFCDPAKWIRLNNNLQYIDEVLKNRDSHETNLLRNVS 136

Query: 932 IE 933
           ++
Sbjct: 137 VQ 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,047
Number of Sequences: 317
Number of extensions: 16351
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 1644
length of database: 114,650
effective HSP length: 66
effective length of query: 1578
effective length of database: 93,728
effective search space: 147902784
effective search space used: 147902784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)