Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002415-TA|BGIBMGA002415-PA|IPR006172|DNA-directed DNA
polymerase B, IPR012337|Polynucleotidyl transferase, Ribonuclease H
fold, IPR004578|DNA polymerase (pol2), IPR006133|DNA polymerase B,
exonuclease, IPR006134|DNA polymerase B region
(1644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 508 e-144
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 235 3e-62
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 78 1e-14
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 35 0.11
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 33 0.25
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 33 0.44
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 31 1.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 31 1.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 31 1.8
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 30 2.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 30 3.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 30 3.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 30 3.1
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 29 4.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 29 5.4
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 7.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 7.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 28 9.5
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 28 9.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 28 9.5
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 508 bits (1252), Expect = e-144
Identities = 282/740 (38%), Positives = 424/740 (57%), Gaps = 23/740 (3%)
Query: 837 MVIEVHTSVRGDMHPDPAVDPIKAVFYSVINDCPNNHFLKKSLTGIIVVDSSSRKYLDGC 896
+ +E+ G + PDP D I+ F++ D N+ + + G IVVD S+ G
Sbjct: 654 LALELFCCSHGGLTPDPTKDSIECCFWAYQEDV-NSSMIDR--VGFIVVDKSASNSSFGR 710
Query: 897 VF-NVPVIYVSNEIETIDEVIKLVNIHDPDIMCGYEIEMNSWGYVLERAEI-LGLDVLKD 954
F + V+ V++E+E I+EVI L DP I+CGYE+ +SWGY++ERA D+ +
Sbjct: 711 SFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRFNYDLPEQ 770
Query: 955 LSRI--TEK----NRQKRWMKNESDYEGRIIGRVIFNVWRLFRHELALSSYSFENCMYEV 1008
LSR+ T K ++ W K + I+GR + N+WR+ R E+ L +YS EN + +
Sbjct: 771 LSRLKCTSKANFAKKENAW-KYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNI 829
Query: 1009 LNERVPSYSYAQLSDWWCDESKMLRWIPVEYYLTKLSGTVRMLQKLDIINRTSELARLFG 1068
++ P Y+ A W + I + Y L + + +L I+ + E AR+ G
Sbjct: 830 FKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIG 889
Query: 1069 LQWWEVLSRGSQFRVESLMLRAARPLNLIALSPTIKQRSTMRAPETLPLIFEPESRFYSD 1128
+ + V+SRGSQF+VES+M R A+P N I SP+ KQ + A E LPL+ EP+S Y++
Sbjct: 890 IDFMSVISRGSQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNN 949
Query: 1129 PVIVLDFQSLYPSMMIAYNYCFSTCIGRVQNINGETAYEFGAWRLRIPRSKLEALVKNSL 1188
PV+VLDFQSLYPS++IAYN C+STC+G V+ +NG+ F + L+KN
Sbjct: 950 PVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGF---MFHSSNPNIVNLIKND- 1005
Query: 1189 IHWSPVGIGFVKTSVRRGVLPXXXXXXXXXXQAVKKSMKMQNDEAVKKAMHSRQLGLKLI 1248
++ SP G +VK +VR+ +L VK+ MK + + V K ++SRQL LKLI
Sbjct: 1006 VYISPNGYAYVKENVRKSLLAKMLEELIETRNMVKRGMKDCDSDYVNKVLNSRQLALKLI 1065
Query: 1249 ANVTYGYTAANFSGRMPCVEVADSVVAKGRETLERAIKLVRENTTWNAKVIYGDTDSMFV 1308
ANVTYGYT+A+FSGRMPC E+AD++V GRE L +++ + +AKV+YGDTDS+FV
Sbjct: 1066 ANVTYGYTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTDSLFV 1125
Query: 1309 LVPGRSRLEAFEIGQQIADAVTADNPPPVALKLEKVYQPCILQTKKRYVGFMFESPDQEK 1368
+PG ++ +AF+IGQQ+A+ +T+ P P+ LK EK+Y PC L KKRYVGF FES Q+
Sbjct: 1126 ELPGATKEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKA 1185
Query: 1369 PTYEAKGIETVRRDGCPAGVKLLRQSLCELFTHGDMSVVKRLVKATLSRLAETSLPVHEL 1428
P +EAKGIETVRRDG P +LLR+ L LF D+S VK+ + ++ ++PV +
Sbjct: 1186 PIFEAKGIETVRRDGTPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDF 1245
Query: 1429 FFTREYHGQAGYRPGASAPPNEI-AKRIGMKDRRAIPRTGWRVSWLVTCGAPGVPLVRLA 1487
F++E + Y+ ++APP + A+R+ KD R P+ G RV +L+ APG L +
Sbjct: 1246 CFSKEVRLEK-YKELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRS 1304
Query: 1488 RTPQELTRDRSLRPHVAYYATRVXXXXXXXXXXXXGVDVFKWWNELGYNRTAQQREQTQS 1547
P+E + + YY G W++E+ RT+ + +T
Sbjct: 1305 VAPEEFLSSSFSQLDINYYINNSLIPPLDRFLNLLGASAQSWYHEMPKPRTSLKLTETVK 1364
Query: 1548 GGIEK-----YMSRERCAVC 1562
GGI+K ++ + C+ C
Sbjct: 1365 GGIQKKTLDTFLMEKLCSSC 1384
Score = 109 bits (261), Expect = 4e-24
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 15/239 (6%)
Query: 19 DIKQVPVLRIFGPAKDGYKACLHIHGVFPYFYIP----CPTQNPE-PQLLYQIAASLDKA 73
++ VPV+R+FG ++ C IH VFPY Y+ T + E P L Q+ S++ A
Sbjct: 32 ELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYVEYSSFAETLDLEVPDFLSQLQTSINYA 91
Query: 74 LNIAMKQATSSNQH-VYKISLVKGLPFYGYHDKEHLYLKVFLYRPGLIKQAVELFSSGAI 132
L +A + + + V + LVKG+PFYGY +LK+ L+ P + V+LF GAI
Sbjct: 92 LALAARANPETYKPAVQSVQLVKGIPFYGYSFCFQKFLKICLFSPKNRDRLVDLFRQGAI 151
Query: 133 LGQTFQPHESHLNFTLQFFIDFNLFGMSDIDLQSVQFRKSGFSQKSNEVLYDTKENTLTS 192
L + Q +ESHL + LQF +D NL+G + IDL ++ N ++ + L +
Sbjct: 152 LNKVIQVYESHLPYLLQFMVDHNLYGCAPIDLDDSIIKRDDLLSFCNVEVHVSPNAILNA 211
Query: 193 --ESSCHYEADCMASHIINRQRIGKGDGIENPGLEEVWNQELERRKQLNMSLASKSLSQ 249
S + D +H + + L E+W E RR L S + S S+
Sbjct: 212 CWLSERNIHTDLYETH------ASSPNSLLVTSLAEIWKSEASRR-NLTSSDETNSFSK 263
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 235 bits (576), Expect = 3e-62
Identities = 189/660 (28%), Positives = 313/660 (47%), Gaps = 51/660 (7%)
Query: 834 LTSMVIEVHTSVRGDMHPDPAVDPIKAVFYSVINDCPNNHFLKKSLTGIIVVDSSSRKYL 893
L M ++ + R + PDP++DP+ + V + F++ + VD+ S+
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRN----VFCVDTCSQ--- 346
Query: 894 DGCVFNVPVIYVSNEIETIDEVIKLVNIHDPDIMCGYEIEMNSWGYVLERAEILGLDVLK 953
+ V N+ E + K V DPD++ GY I Y+L+RA+ L +
Sbjct: 347 ---IVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFP 403
Query: 954 DLSRI-------TEKNRQKRWMKNESDYEGRIIGRVIFNVWRLFRHELALSSYSFENCMY 1006
L RI E + I GR+ ++ ++ + + L SYS
Sbjct: 404 LLGRIHNFFSVAKETTFSSKAYGTRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCS 463
Query: 1007 EVLNERVPSYSYAQLSDWWCDESKMLRWIPVEYYLTKLSGTVRMLQKLDIINRTSELARL 1066
+ L E+ Y+ ++D + R + + Y L R++ KL +E+AR+
Sbjct: 464 QFLGEQKEDVHYSIITDLQNGTADSRRRLAI-YCLKDAYLPQRLMDKLMCFVNYTEMARV 522
Query: 1067 FGLQWWEVLSRGSQFRVESLMLRAARPLNLIALSPTIKQRSTMRAPETLPLIFEPESRFY 1126
G+ + +L+RG Q +V S + R A +L+ P I+ T E +I EP +Y
Sbjct: 523 TGVPFNFLLARGQQIKVISQLFRKALQHDLVV--PNIRVNGTDEQYEGATVI-EPIKGYY 579
Query: 1127 SDPVIVLDFQSLYPSMMIAYNYCFSTCIGRVQNINGETAYEFGAWRLRIPRSKLEALVKN 1186
P+ LDF SLYPS+M A+N C++T + + TA KL+ V
Sbjct: 580 DTPIATLDFSSLYPSIMQAHNLCYTTLL------DSNTAELL----------KLKQDVDY 623
Query: 1187 SLIHWSPVGIGFVKTSVRRGVLPXXXXXXXXXXQAVKKSMKMQNDEAVKKAMHSRQLGLK 1246
S+ +P G FVK VR+G+LP + K +K + D K + RQL LK
Sbjct: 624 SV---TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVLDGRQLALK 680
Query: 1247 LIANVTYGYTAANFSGRMPCVEVADSVVAKGRETLERAIKLVR-----ENT-TWNAKVIY 1300
+ AN YG+T A +GR+PC+ ++ SV + GR+ +E+ +V EN + +A VIY
Sbjct: 681 VSANSVYGFTGAT-NGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIY 739
Query: 1301 GDTDSMFVLVPGRSRLEAFEIGQQIADAVTADNPPPVALKLEKVYQPCILQTKKRYVGFM 1360
GDTDS+ V ++ EA ++G++ A+ V+ P P+ L+ EKVY P +L +KKRY G
Sbjct: 740 GDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLF 799
Query: 1361 FESPDQEKPTYEAKGIETVRRDGCPAGVKLLRQSLCELFTHGDMSVVKRLVKATLSRLAE 1420
+ D ++KGIETVRRD CP ++ +L ++ D+ + K +S L +
Sbjct: 800 WTRTD-TYDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQDVEGAQLFTKKVISDLLQ 858
Query: 1421 TSLPVHELFFTREYHGQAGYRPGASAPPNEIAKRIGMKDRRAIPRTGWRVSWLVTCGAPG 1480
+ + +L T+ + Y A E+A+R+ +D + P G RV++++ GA G
Sbjct: 859 NKIDMSQLVITKAL-SKTDY--AAKMAHVELAERMRKRDAGSAPAIGDRVAYVIIKGAQG 915
Score = 54.4 bits (125), Expect = 1e-07
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 23 VPVLRIFGPAKDGYKACLHIHGVFPYFYIPCPTQNPEPQLLYQIAASLDKALNIAMKQAT 82
VP +R+FG +G +H+ G PYFY+ P P++L + LD N +
Sbjct: 113 VPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPV-GFRPEMLERFTQDLDATCNGGV---- 167
Query: 83 SSNQHVYKISLVKGLPFYGYHDKEHL-YLKVFLYRPGLIKQAVELFSSGAI-------LG 134
H I + + L YG+ E ++K+F P ++ +A +F G +G
Sbjct: 168 --IDHCI-IEMKENL--YGFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELFPVG 222
Query: 135 QTFQPHESHLNFTLQFFIDFNLFGMSDIDLQSVQFR 170
ES+ + L+F ID ++ GM+ I L + +++
Sbjct: 223 VGVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQ 258
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 77.8 bits (183), Expect = 1e-14
Identities = 140/693 (20%), Positives = 269/693 (38%), Gaps = 51/693 (7%)
Query: 907 NEIETIDEVIKLVNIHDPDIMCGYEIEMNSWGYVLERAEILGLDVLKDLSRITEKNRQKR 966
+E+ ++ + V +DPD+ G++ EM + +L R + + + R+ +
Sbjct: 601 SEVSLLNNFLNKVRTYDPDVYFGHDFEM-CYSVLLSRLKERKIHNWSSIGRLRRSEWPRS 659
Query: 967 WMKNESDY-EGRII-GRVIFNVWRLF-RHELALSSYSFENCMYEVLNERVPSYSYAQLSD 1023
+ ++ + E +II GR++ ++ F R + S+S + + L+ + + +
Sbjct: 660 FNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKALQ 719
Query: 1024 WWCDESKMLRWIPVEYYLTKLSGTVRMLQKLDIINRTSELARLFGLQWWEVLSRGSQFRV 1083
W D + L V + + K+ ++ + L + G W L+ R
Sbjct: 720 SWTDTAHGLLDYLVHCEIDTFF-IAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERN 778
Query: 1084 ESLMLRAARPLNLIALSPTIKQRSTMRAPETLPLIFEPESRFYSDPVIVLDFQSLYPSMM 1143
E ++L + I KQ+S R E F E + + + +
Sbjct: 779 EYILLHEFKKNGYIVPD---KQQSIRRHAEA----FGAEDGLQEESLGKKKDKYKGGLVF 831
Query: 1144 IAYNYCFSTCIGRVQNING---ETAYEFGAWRLRIPRSKLEALVKNSLIHWSPVGIGFVK 1200
+ TCI V + N E+ + RS + + I +P
Sbjct: 832 EPQKGLYETCI-LVMDFNSLYPSIIQEYNICFTTVDRSPSNS-DSDDQIPDTP------S 883
Query: 1201 TSVRRGVLPXXXXXXXXXXQAVKKSMKMQNDEAVKKAMHS-RQLGLKLIANVTYG---YT 1256
S +G+ P + +K +K + ++ +Q LKL AN YG YT
Sbjct: 884 ASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYT 943
Query: 1257 AANFSGRMPCVEVADSVVAKGRETLERAIKLVRENTTWNAKVIYGDTDSMFVLVPGRSRL 1316
+ F R +A + KGRE L +L + +VIYGDTDS+ + +
Sbjct: 944 KSRFYAR----PLAVLITYKGREALMNTKELADQ---MGLQVIYGDTDSVMLNTNVTDKN 996
Query: 1317 EAFEIGQQIADAVTADNPPPVALKLEKVYQPCILQTKKRYVGFMFESPDQEKPTYEAKGI 1376
A IG + + V + + + ++ VYQ +L KK+Y +S Q KP + KG+
Sbjct: 997 HALRIGNEFKEKVN-ERYSKLEIDIDNVYQRMLLHAKKKYAALQLDS--QGKPNLDVKGL 1053
Query: 1377 ETVRRDGCPAGVKLLRQSLCELFTHGDM--SVVKRLVKATL---SRLAETSLPVHE-LFF 1430
+ RR+ C + + L ++ + G++ +V++ + + ++ P ++ + F
Sbjct: 1054 DMKRREFCTLAKEASKFCLDQILS-GELTETVIENIHSYLMDFSEKMRNGKFPANKFIIF 1112
Query: 1431 TREYHGQAGYRPGASAPPNEIAKRIGMKDRRAIPRTGWRVSWLVT-CGAPGVPLVRLART 1489
R Y G + P ++A + K R R G + +++ A G P R A +
Sbjct: 1113 NRLGKNPEDYPNGKTMPFVQVA--LKKKARGENVRVGDVIPFIIAGSDADGHPADR-AYS 1169
Query: 1490 PQEL--TRDRSLRPHVAYYATRVXXXXXXXXXXXXGVDVFKWWNELGYN-RTAQQREQTQ 1546
PQE+ T + + Y + ++ G + + LG + R E ++
Sbjct: 1170 PQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRARLAECLGLDARKYYSHETSE 1229
Query: 1547 SGGIEKYMSRERCAVCGVRTIVRSAVCPQCAHT 1579
S ++Y S C + CP C T
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNAT 1262
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 34.7 bits (76), Expect = 0.11
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 465 RPKKKNERVNNPTNTDSNIDTSEIDEINVSRETADGDVCISELVRASKISKTSIENTEIK 524
R K K+++ ++D+N D+ + D + S ++A G E + ++K S ++ + K
Sbjct: 481 RSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSA-GVASDGESSPETPLTKAS-KSKKAK 538
Query: 525 SEETFIDAVSRITAKQNIVKLMNKSEIYDLQNKFVPTAGPSNKPVDCDNTEMGNSSNNE 583
+ + D + +K + Q + T + + D+TE GNS+N E
Sbjct: 539 ASKLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNSTNKE 597
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 33.5 bits (73), Expect = 0.25
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 186 KENTLTSESSCHYEADCMASHIINRQRIGKGDGIEN-PGLEEVWNQELERRKQLNMSLAS 244
K+ + EAD H RQ++ KGD N E++ N L++ + ++ A
Sbjct: 56 KQKRALQQKISQMEADLSQKHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAE 115
Query: 245 KSLSQGLTSLKQVETDSHYKFENIFAVKLS-NKIDKPVLLEHAYYPAETLGD 295
KS Q + K+ K N +L K + + E A +E + D
Sbjct: 116 KSSVQSSLNTKENTPQQPKKSRNRQKERLERRKAEMKKMSEQAELESEKMAD 167
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 32.7 bits (71), Expect = 0.44
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 12/183 (6%)
Query: 317 LNRTTKMNLNEHEEEDLDTTIVDENLVLNSSMSLQYSQVLLNSEDMELIDMLHDMDQQRV 376
LN T +++LN EE+D D ++ + L S+ ++ ++ +D L D DQ
Sbjct: 99 LNNTKEISLN--EEDDSDDSVNSDKLENEGSVGSS-----IDENELVDLDTLLDNDQPEK 151
Query: 377 EEDSIMGTPANRDQEVDMELDDAEYSRIFNDDSVCHDQNESENNGSPLSWHDSFWDGANI 436
E + T R + + + D+ + +ESE S + ++S + + I
Sbjct: 152 NESNTAST--IRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSE-SEI 208
Query: 437 PQLDGTFDNDHXXXXXXXXXXXLQLGLSRPKKKNERVNNPTNTDSNIDTSEIDEINVSRE 496
D D+ + L++ +KK+E + + S+ D I+EI++ +
Sbjct: 209 ESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEA--DAESVLSSDDNDSIEEISIKKV 266
Query: 497 TAD 499
D
Sbjct: 267 KYD 269
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 894 DGCVFNVPVIYVSNEIETIDEVIKLVNIHD--PDIMCGYEIEMNSWGYVLERAEILGLDV 951
D ++ V + Y+S +TI +IK+V PD+ Y + S Y+L + +L
Sbjct: 1726 DNILYYVKLFYLSEICKTIISMIKVVADSSVVPDLTINYSQQSKSQFYILCKNVLLWCGS 1785
Query: 952 LKDLSRITEKNRQKRWMKNESDYEGRIIGRVIFNVWRLFRHELALSSYS 1000
++ + +++ R M Y + RV ++ +F L + +S
Sbjct: 1786 SNNIEILDDESNLLRLMSLVEKYSLPFLRRVALVLYCMFDISLEFNEFS 1834
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 599 YDASKVFDDSFNQTFLQEQTNCDDCSDIIANEYEKQEDYDKFKDTELKLDVSVNEKLDTG 658
+ +V +D+F +T + E DD +I +E E+Q D++ + + + + KLD
Sbjct: 674 FAGEEVEEDAFGETEMDE----DDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKV 729
Query: 659 IKIFTPTVKPPTKNEME 675
++ VK +E E
Sbjct: 730 LEDADAKVKDEESSEEE 746
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 30.7 bits (66), Expect = 1.8
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 774 EQVKKWINEQKALQLLSQFSSEQAISKNM--DDFNN----SQALGLNEDEINS-SIVSIE 826
+Q++ W+NE+ A L+S F S+ + KN DF + S+ G+N ++ S + E
Sbjct: 794 QQIEHWVNEKVASHLMSVFPSKVILRKNQRPSDFASLVAVSELTGVNLSASSTPSEIMTE 853
Query: 827 NCESADFLTSMVIEV 841
+ D T M++++
Sbjct: 854 IATTKDKRTKMLLQL 868
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 30.3 bits (65), Expect = 2.3
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 1028 ESKMLRWIPVEYYLTKLSGTVRMLQKLDIINRTSELARLFGLQWWEVLSRGSQFRVESLM 1087
ES +R +P +Y +LS T + IN S L W V + V +
Sbjct: 487 ESPSVRLLPAVFYGAELSSTSFLSTIHSFINNWSHYISASFLSKWIVCALSLSIAVNVFL 546
Query: 1088 LRAARPLNLIALSPTIKQRSTMRAPETLPLIFEPESRFYSDPVIVLDFQSLYPSMMIAYN 1147
L AAR LN I P +++ + E + I P S S I D + S++ +
Sbjct: 547 LNAAR-LNSIKEEP--EKKVVEKVVEVVKYI--PSSNSSSIDDIQKD-EIAQESVVRSLE 600
Query: 1148 YCFSTC-IGRVQNINGETAYEFGAWRLRIPRSKLEALVKN 1186
C + G++ +N E + + +IP LE ++K+
Sbjct: 601 ECITLYNNGQISTLNDEEVVQLTLAK-KIPLYALERVLKD 639
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 358 NSEDMELIDMLHDMDQQRVEEDSIMGTPANRDQEVDMELDDAEYSRIFNDDSVCHDQNES 417
+S + E + + ++ VE A+ D E D E + E +DS D++ES
Sbjct: 49 SSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESES 108
Query: 418 ENNGSPLSWHDS 429
E+ S +S
Sbjct: 109 ESESESESEEES 120
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 29.9 bits (64), Expect = 3.1
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 374 QRVEEDSIMGTPANRDQEVDMELDDAEYSRIFNDDSVCHDQNESENNGSPLSWHDSFWDG 433
+ +E I P+ + + D +L+ + + ++ V + N GSP S S
Sbjct: 1244 ETLENTQIDIYPSFKTESTDDQLEKVTQTNVASNKRVAPYADSMANVGSPESDCFSVATS 1303
Query: 434 ANIPQLDGTFDNDHXXXXXXXXXXXLQLGLSRPKKKN----ERVNNPTNTDSNIDTSEID 489
++IP+ + F ND G SR N + VN ++ + TS+
Sbjct: 1304 SDIPKANIDFTNDISTQNTFPASPVSNSGFSRQTYPNISQRQGVNMLSHKRKSASTSDRR 1363
Query: 490 EINVSRETADGDVCISELVRASKISKTSIENT 521
+N S T+ ++ IS + A KIS SI+N+
Sbjct: 1364 FVNAS-STSGMNMPISSSISA-KIS--SIQNS 1391
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 953 KDLSRITEKNRQKRWMKNESDYEGRIIGRVIFNVWRLFRHELALSSYSFENCMYEVLNER 1012
+ LSR+T+ K K S GR+ + ++++ F+H+ SY + L E
Sbjct: 997 RHLSRLTDTFVSKANAKQRSGRAGRVQEGICYHLFSKFKHDTQFLSYQTPEILRLNLQEV 1056
Query: 1013 VPSYSYAQLSD 1023
V Q+ D
Sbjct: 1057 VLRVKMCQMGD 1067
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 664 PTVKPPTKNEMETKYKIPKTKQVQPFFSD--YKDVGDKVEIGQLVLKLHSNLSRDQKPFE 721
P + P T++ YKIP K FF D Y D ++I + H +SRD+K +
Sbjct: 186 PRLLPCTRDWFAI-YKIPDGKPKNRFFFDGNYLPKSDALDIIAQCHQ-HWKVSRDRKQYI 243
Query: 722 KVLETESIEN 731
K ES+ N
Sbjct: 244 KNFHNESVNN 253
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 308 LPSKDLDLTLNRTTKMNLNEHEEEDLDTTIVDENLVLNSSMSLQYSQVLLNSEDMELID 366
L SK ++ + K L+ ++ D+DT D N+VLN + Q +++ + +M ++D
Sbjct: 6 LESKSEHISDDEERKEQLDYKKQMDVDT---DRNIVLNGRLESQIAKLSVPPHEMRVVD 61
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 28.7 bits (61), Expect = 7.2
Identities = 28/155 (18%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 481 SNIDTSEIDEINVSRETADGDVCISELVRASKISKTSIENTEIKSEETFIDAVSRITAKQ 540
+++ + + +S+ + + S + +ASK K + T + S++ + +VS++ +
Sbjct: 166 TSVSSLSLASTAMSKSASASEFSGSSVTKASK--KLTSSPTSVASKKATLSSVSKVASTS 223
Query: 541 NI------VKLMNKSEIYDLQN-KFVPTAGPS--NKPVDCDNTEMGNSSNNELELSPDGN 591
++ + KS +Q+ +F PS + + +NTE + ++ ++P G
Sbjct: 224 SLPVTSVSASVDPKSAASKVQDAEFSIQTAPSFPKEKEEKENTE--ETEESKKSINPTGT 281
Query: 592 ELGIVSFYDASKVFDDSFNQTFLQEQTNCDDCSDI 626
+ D D + CDDC D+
Sbjct: 282 SKALALDADIDAALTDKEGWFIQFYSSECDDCDDV 316
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 7.2
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 39/280 (13%)
Query: 467 KKKNERVNNPTNTDSNIDTSEIDEINVSRETADGDVCISELVRASKISKTSIENTEIK-- 524
KK+N + N TS N+ E+AD S+L S++SK + +I+
Sbjct: 151 KKRNALKKEQEDLIQNSATSHSKSDNLDSESADD----SDLADESELSKKYTSDRKIRNA 206
Query: 525 SEETFIDA------VSRITAKQNIVKLMNKSEIYDLQNK--FVPTAGPSNKPV---DCDN 573
S++ ++ ++R TA + V + K + + K F NK + + ++
Sbjct: 207 SKKALLELHRNTARLTRETALKPEVVVKKKVTLREFFQKIGFKNDNQLENKAISEEEANS 266
Query: 574 TEMGNSSNNELELSPDGNELGIVSFYDASK--VFDDSFN-QTFLQEQTNCDDCSDIIA-N 629
TE N E + S D GIV+ D + V DDS + E + S N
Sbjct: 267 TEPPNVEKEEPKPSVD-RSTGIVNSEDIKELSVEDDSLELKEITPEALDIGQTSLFTTLN 325
Query: 630 EYE-KQEDYDKFKDTELKLDVSVNEKLDTGIKIFTPTVKPPTKNEMETKYKIPKTKQVQP 688
+ + K+ED KF E+ ++ ++ +D+ ++I VKP T I K+K
Sbjct: 326 QTQVKKEDNKKFLLKEINAKLNEDD-IDSELEI---EVKPKTT----ALDNIEKSK---- 373
Query: 689 FFSDYKDVGDKVEIGQLVLKLHSNLSRDQKPFEKVLETES 728
S+ + G K ++ QL LS+D KPFE +S
Sbjct: 374 -LSEENEHGIKGKLKQLA---EIKLSKDGKPFENEFNIKS 409
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 567 KPVD-CDNTEMGNSSNNELELSPDGNELGIVSFYDASKVFDDSFNQTFLQEQTNCDDCSD 625
KP++ + ++M + + + L+ NE SF+ + + + +F++ +CDD +
Sbjct: 53 KPMNQTEASQMKGTFSRDFSLNEMNNEFITDSFFCTTTPDPKTESPSFVKYNAHCDDHPE 112
Query: 626 IIANEYEKQEDYDKFKD 642
I + +D+ F+D
Sbjct: 113 ISGHVSSNDKDFAYFED 129
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 28.3 bits (60), Expect = 9.5
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 159 MSDIDLQSVQFRKSGFSQKSNEVLYDTKENTLTSESSCHYEADCMASHIINRQRIGKGDG 218
+ ++ + F+ FS KS+ +TL +SS + + SH + +G+G
Sbjct: 28 LEELQDPELYFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERLVSHPRTKNFDLQGNG 87
Query: 219 IENPGLEEVWN---QELERRKQLNMSLASKSLSQGLTSLKQVETDSHYKFENIFAVKLSN 275
+N L+EV Q + + L L S + S SL D + E+ K N
Sbjct: 88 GQNSALKEVNTPAYQSMHHFEHLITPLPSTNASHSEVSLSAGVNDLNSNSEHDLLPKSVN 147
Query: 276 K 276
K
Sbjct: 148 K 148
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 506 ELVRASKISKTSIENTEIKSEETFIDAVSRITAKQNIVKLMNKSEIYDLQNKFVPTAGPS 565
EL KI I + ++ + F+D + + +N++K + ++Y L K + + P
Sbjct: 560 ELSNILKIVYLGIFSQNVQIQLIFLDELLKSKKSENVLKFIYTRKLYALMQKELQHSNPQ 619
Query: 566 NK 567
N+
Sbjct: 620 NE 621
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,570,528
Number of Sequences: 5004
Number of extensions: 334144
Number of successful extensions: 1101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 41
length of query: 1644
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1561
effective length of database: 1,947,146
effective search space: 3039494906
effective search space used: 3039494906
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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