Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002415-TA|BGIBMGA002415-PA|IPR006172|DNA-directed DNA
polymerase B, IPR012337|Polynucleotidyl transferase, Ribonuclease H
fold, IPR004578|DNA polymerase (pol2), IPR006133|DNA polymerase B,
exonuclease, IPR006134|DNA polymerase B region
(1644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 303 5e-82
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 231 4e-60
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 65 5e-10
07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596... 43 0.002
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 35 0.63
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736... 34 0.83
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 33 1.9
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 33 2.5
09_02_0023 + 3076899-3077066,3077144-3077203,3077561-3077686,307... 33 2.5
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 32 4.4
03_06_0193 + 32243458-32243556,32243566-32244273 31 5.9
02_04_0082 - 19559626-19560152,19560927-19561149 31 5.9
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 31 5.9
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175... 31 7.8
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 303 bits (745), Expect = 5e-82
Identities = 159/332 (47%), Positives = 219/332 (65%), Gaps = 15/332 (4%)
Query: 980 GRVIFNVWRLFRHELALSSYSFENCMYEVLNERVPSYSYAQLSDWWCDESKMLRWIPVEY 1039
GR+I N+WRL R E+ L++YS E EVL +VP L+ W+ S R+ +EY
Sbjct: 1088 GRIILNLWRLMRAEVKLNNYSLEAVANEVLRRKVPLVPTKILNRWFATGSGRGRYRCIEY 1147
Query: 1040 YLTKLSGTVRMLQKLDIINRTSELARLFGLQWWEVLSRGSQFRVESLMLRAARPLNLIAL 1099
+ S + +L +LD++NRTSELAR+FG+ ++ VLSRGSQFRVES++LR N +A+
Sbjct: 1148 VNKRSSLNLEILNQLDLVNRTSELARVFGIDFFSVLSRGSQFRVESMLLRLVHTQNYLAI 1207
Query: 1100 SPTIKQRSTMRAPETLPLIFEPESRFYSDPVIVLDFQSLYPSMMIAYNYCFSTCIGRV-- 1157
SP +Q ++ A E LPL+ EPES FYSDPV+VLDFQSLYPSM+IAYN C+STC+G+V
Sbjct: 1208 SPGNQQVASQPAMECLPLVMEPESAFYSDPVVVLDFQSLYPSMIIAYNLCYSTCLGKVFP 1267
Query: 1158 --QNINGETAYEFGAWRLRIPRSKLEALVKNSLIHWSPVGIGFVKTSVRRGVLPXXXXXX 1215
++ G ++Y ++ A +KN L+ +P G+ +V+ VR+GVLP
Sbjct: 1268 SKSSVLGVSSYSADPQKI--------ADLKNQLL-LTPNGVLYVQPEVRKGVLPRLLEEI 1318
Query: 1216 XXXXQAVKKSMK--MQNDEAVKKAMHSRQLGLKLIANVTYGYTAANFSGRMPCVEVADSV 1273
VKK+MK + + +++ ++RQL LKLIANVTYGYTAA FSGRMPC E+ADS+
Sbjct: 1319 LSTRIMVKKAMKKLSASQKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEIADSI 1378
Query: 1274 VAKGRETLERAIKLVRENTTWNAKVIYGDTDS 1305
V GR TLE AI V ++ W A+V+YGDTDS
Sbjct: 1379 VQCGRRTLETAISFVNQHPLWKARVVYGDTDS 1410
Score = 104 bits (250), Expect = 5e-22
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 1361 FESPDQEKPTYEAKGIETVRRDGCPAGVKLLRQSLCELFTHGDMSVVKRLVKATLSRLAE 1420
+ESP+Q++P ++AKGIETVRRD CPA K+L QS+ +F D++ V+ ++ +R+
Sbjct: 1411 YESPEQKEPIFDAKGIETVRRDTCPAVAKILEQSIRIMFEEQDLAKVRSYLERQWTRILS 1470
Query: 1421 TSLPVHELFFTREYH-GQAGYRPGASAPPNEIAKRIGMKDRRAIPRTGWRVSWLVTCGAP 1479
+ + + F +E G R + P +A + + D RA PR G RV ++V G P
Sbjct: 1471 GKISIQDFVFAKEVRLGTYSARASSLPPAAIVATKAILSDPRAEPRYGERVPYVVIHGEP 1530
Query: 1480 GVPLVRLARTPQELTRDRS-LRPHVAYYATRVXXXXXXXXXXXXGVDVFKWWNELGYN-R 1537
G LV + P L S R + YY T+ G D+ KW+NE+ R
Sbjct: 1531 GARLVDMVIDPYGLLEVGSPYRLNALYYITKQIIPALQRVFGLVGADLNKWFNEMPRPIR 1590
Query: 1538 TAQQREQTQSG 1548
+ Q+ SG
Sbjct: 1591 ETLAKRQSASG 1601
Score = 81.0 bits (191), Expect = 7e-15
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 1 MTKPTAGLDVTYSEFRGTDIKQVPVLRIFGPAKDGYKACLHIHGVFPYFYIPCPTQNPEP 60
M P G D +YS F G ++++VPV+RI+G G K CLHIH + Q P
Sbjct: 29 MAPPLPGFDFSYSHFHGGEVEEVPVIRIYGSTPAGQKTCLHIHRLISLVIFDSRLQ-PSL 87
Query: 61 QLLYQIAASLDKALNIAMKQATSSNQHVYKISLVKGLPFYGYHDKEHLYLKVFLYRPGLI 120
++ ++ S+ L + K+ N + KG F GL+
Sbjct: 88 RVFDALSVSVLPFLYVPCKEDLLHN-------VEKGNSFIS----------------GLL 124
Query: 121 KQAVELFSSGAILGQTFQPHESHLNFTLQFFIDFNLFGMSDIDLQSVQFR 170
+ GA+L + FQP+ESH+ + L F ID+NL+GM + + +FR
Sbjct: 125 SDLEKALQDGAVLNRVFQPYESHIPYLLHFLIDYNLYGMGYVHVTDFKFR 174
Score = 78.6 bits (185), Expect = 4e-14
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
Query: 794 SEQAISKNMDDFNN-SQALGLNEDEINSSIVSIENCESADF-----LTSMVIEVHTSVRG 847
S Q I KN+ D+++ SQ G +E + + + I C+ A LT + IEV T RG
Sbjct: 871 SNQEI-KNLADWHDFSQISGGDEKDKLTPLSQIGFCDPASIGGGQQLTIISIEVITESRG 929
Query: 848 DMHPDPAVDPIKAVFYSVINDCPNNHFLKKSLTGIIVVDSSSRKY-LDGCVFNVPVIYVS 906
++ PDP D I AV +V +D N + + G DSS R+ LDG V V
Sbjct: 930 ELRPDPRFDAINAVSLAVEDDADNTIEVHVLIRGNN--DSSHRRRNLDG-VSGCDVNVFP 986
Query: 907 NEIETIDEVIKLVNIHDPDIMCGYEIEMNSWGYVLERAEILGLDVLKDLSRITEKNRQKR 966
E E ++ +I + DPDI+ G+EI++ S G++ ERA LG+ +LK +SR T ++ K
Sbjct: 987 GERELLNHLINAICSIDPDIIVGWEIQLGSLGFLAERAAHLGIGLLKRISR-TPPHQMKH 1045
Query: 967 WMKNESD 973
N D
Sbjct: 1046 PPMNPVD 1052
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 231 bits (565), Expect = 4e-60
Identities = 178/593 (30%), Positives = 279/593 (47%), Gaps = 50/593 (8%)
Query: 923 DPDIMCGYEIEMNSWGYVLERAEILGLDVLKDLSRITEKNRQKRWMKNESDYEGR----- 977
DPDI+ GY I Y++ERAE+L + L RI + R S G
Sbjct: 382 DPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIRNSRVRVRDTTFSSRQYGMRESKD 441
Query: 978 --IIGRVIFNVWRLFRHELALSSYSFENCMYEVLNERVPSYSYAQLSDWWCDESKMLRWI 1035
+ GRV F++ + + + LSSYS + L E+ ++ +SD S+ R +
Sbjct: 442 VAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRRRL 501
Query: 1036 PVEY------------YLTKLSGTVRMLQKLDIINRTSELARLFGLQWWEVLSRGSQFRV 1083
V YL R+L KL I E+AR+ G+ +LSRG +V
Sbjct: 502 AVYCLKVGLLDCQWLRYLPDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKV 561
Query: 1084 ESLMLRAARPLNLIALSPTIKQRSTMRAPETLPLIFEPESRFYSDPVIVLDFQSLYPSMM 1143
S +LR A+ NL+ P IK +++ + + E + FY P+ LDF SLYPS+M
Sbjct: 562 LSQLLRKAKQKNLVI--PNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIM 619
Query: 1144 IAYNYCFSTCIGRVQNINGETAYEFGAWRLRIPRSKLEALVKNSLIHWSPVGIGFVKTSV 1203
+AYN C+ T + A +L +P ++ +P G FVK V
Sbjct: 620 MAYNLCYCTLVPPED-----------ARKLNLPPES---------VNKTPSGETFVKPDV 659
Query: 1204 RRGVLPXXXXXXXXXXQAVKKSMKMQNDEAVKKAMHSRQLGLKLIANVTYGYTAANFSGR 1263
++G+LP + K +K D + + RQL LK+ AN YG+T A G+
Sbjct: 660 QKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATV-GQ 718
Query: 1264 MPCVEVADSVVAKGRETLERAIKLVRENTTW------NAKVIYGDTDSMFVLVPGRSRLE 1317
+PC+E++ SV + GR+ +E KLV + T NA+VIYGDTDS+ V + +
Sbjct: 719 LPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVED 778
Query: 1318 AFEIGQQIADAVTADNPPPVALKLEKVYQPCILQTKKRYVGFMFESPDQEKPTYEAKGIE 1377
A ++G++ AD ++ P+ L+ EK+Y P +L +KKRY G + +P ++ + KGIE
Sbjct: 779 AMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNP-EKFDKMDTKGIE 837
Query: 1378 TVRRDGCPAGVKLLRQSLCELFTHGDMSVVKRLVKATLSRLAETSLPVHELFFTREYHGQ 1437
TVRRD C L+ + L ++ D+ + VK T+S L + + L T+ +
Sbjct: 838 TVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGL-TK 896
Query: 1438 AGYRPGASAPPNEIAKRIGMKDRRAIPRTGWRVSWLVTCGAPGVPLVRLARTP 1490
G A E+A+R+ +D P G RV +++ A G + P
Sbjct: 897 TGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDP 949
Score = 56.8 bits (131), Expect = 1e-07
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 25 VLRIFGPAKDGYKACLHIHGVFPYFYIPCPTQNPEPQLLYQIAASLDKALNIAMKQATSS 84
+LRIFG ++G+ C +HG PYFYI CP P + + +L+ + + + ++
Sbjct: 131 ILRIFGVTREGHSVCCQVHGFEPYFYISCP-MGMGPDDISRFHQTLEGRMKDSNRN-SNV 188
Query: 85 NQHVYKISLVKGLPFYGYHDKE-HLYLKVFLYRPGLIKQAVEL-FSSGAIL--------- 133
+ V +I LV+ Y ++ +LK+ + P ++ L F+ IL
Sbjct: 189 PRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGLHFAPIGILERGITIEGL 248
Query: 134 -GQTFQPHESHLNFTLQFFIDFNLFGMSDIDLQSVQF 169
++F +ES++ F L+F ID N+ G + I++ + ++
Sbjct: 249 GSKSFLTYESNILFALRFMIDCNIVGGNWIEVPAGKY 285
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 64.9 bits (151), Expect = 5e-10
Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 40/342 (11%)
Query: 1103 IKQRSTMRAPETLP-LIFEPESRFYSDPVIVLDFQSLYPSMMIAYNYCFSTCIGRVQNIN 1161
+ Q T + P L+ EP+ Y V++LDF SLYPS++ YN CF+T + R + N
Sbjct: 894 VDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT-VDRSADGN 952
Query: 1162 GETAYEFGAWRLRIPRSKLEALVKNSLIHWSPVGIG-----FVKTS-VRRGVLPXXXXXX 1215
+ +P S ++ L +G G + + RG L
Sbjct: 953 VPNLPASKTTGV-LPESFNNLVLHGFLTAMRNLGFGLDCGDMISVGLLMRGFLMIKLLKS 1011
Query: 1216 XXXXQAVKKSMKMQNDEAVKKAMHSRQLGLKLIANVTYGYTAANFSGRMPCVEVADSVVA 1275
+ + KS ++ +Q LKL AN R +A+ +
Sbjct: 1012 LVERRRMVKSWLKTASGLKRQQFDIQQQALKLTAN------------RFYAKPLAELITL 1059
Query: 1276 KGRETLERAIKLVRENTTWNAKVIYGDTDSMFVLVP----GRSRLEAFEIGQQIADAVTA 1331
+GRE L+ + LV+ N N +VIYGDTDS+ + R++ A ++ Q+ +
Sbjct: 1060 QGREILQNTVDLVQNNL--NLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQERDSMHSG 1117
Query: 1332 DNPPPVA-------------LKLEKVYQPCILQTKKRYVGFMFESPDQEKPTYEAKGIET 1378
+ P ++ + L+ +Y+ +L KK+Y + E KG++
Sbjct: 1118 ERPVNISALMQVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVALDGSLRENIERKGLDM 1177
Query: 1379 VRRDGCPAGVKLLRQSLCELFTHGDMSVVKRLVKATLSRLAE 1420
VRRD ++ L ++ + G V + ++L ++ E
Sbjct: 1178 VRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQE 1219
>07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,
5964162-5964188,5965320-5965375,5966613-5966681,
5966901-5966995,5967141-5967251,5970545-5970879,
5971218-5971253,5971254-5971421
Length = 384
Score = 42.7 bits (96), Expect = 0.002
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 33/107 (30%)
Query: 980 GRVIFNVWRLFRHELALSSYSFENCMYEVLNERVPSYSYAQLSDWWCDESKMLRWIPVEY 1039
GR+I N+WRL R E+ L++YS E EVL R P +S +Y
Sbjct: 286 GRIILNLWRLMRAEIKLNNYSLEAVADEVL--RKPFFS-------------------DKY 324
Query: 1040 YLTKLSGTVRMLQKLDIINRTSELARLFGLQWWEVLSRGSQFRVESL 1086
YLT +Q + RTS LA +F + ++ VLSR S +RVES+
Sbjct: 325 YLT--------MQ----VKRTSVLACVFSIDFFSVLSRSSLYRVESI 359
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 34.7 bits (76), Expect = 0.63
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 37 KACLHIHGVFPYFYIPCPTQNPEPQLLYQIAASLDKALNIAMKQATSSNQHV---YKISL 93
K LH + +F +++ T E Q ++ ++D I + + SN+ + Y ++
Sbjct: 340 KQVLH-YTIFAAYHLVVETSFFEDQRVFLNDTNVDGTPQITHQTSIVSNRSLPTDYDVTC 398
Query: 94 VKGLPFYGYHDKEHLYLKVFLYRPGLIKQAVELFSSGAILGQTFQPHE---SHLNFTLQF 150
YHD +H F +P Q G + P E S ++ +L+
Sbjct: 399 TSRGSLLEYHDGDHKATVPFTNKPDSYTQ-----DEGTAIHCEAPPSENLLSSVSGSLRR 453
Query: 151 FIDFNLFGMSDIDLQSVQFRKSGFSQKSNEVLYDTKENTLTSESSCHY 198
FID + + + S Q +++ E +T +TLT + SC Y
Sbjct: 454 FIDIFRYQNIYLPVTSSQDTTGHQNEQDTETSQETASDTLTKDHSCEY 501
>05_03_0013 +
7362056-7362471,7363235-7364081,7364272-7364758,
7365062-7365126,7365275-7365643
Length = 727
Score = 34.3 bits (75), Expect = 0.83
Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 222 PGLEEVWNQELERRKQLNMSLASKSLSQGLTSLKQVETDSHYKFENIFAVKLSNKIDK-- 279
P ++E ++EL+R+K L+ S SL + ++ + D + + AV +++
Sbjct: 191 PSVQETSSRELKRKKILSNSPVYSSLKKVRIAIDSDDEDDNILSYELPAVDKMVEVETGN 250
Query: 280 -------PVLLEHAYYPAETLGDTQLFKAVDVSIHLPSKDLDLTL-------NRTTKMNL 325
P+++++ + P++ L T + V+ +H+ S D+D++L N NL
Sbjct: 251 TSVANSPPIVVDNLFVPSDVL--TSMANEVEKDVHVDSVDVDMSLASPVRVENALEVANL 308
Query: 326 NEHEEEDL 333
N E++L
Sbjct: 309 NAQPEKNL 316
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 33.1 bits (72), Expect = 1.9
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 314 DLTLNRTTKMNLNEHEEED-LDTTIVDENLVLNSSMSLQYSQVLLNSEDMELIDMLHDMD 372
+L R TK NL+ E + LDT DE + +S ED ++ D + +
Sbjct: 505 ELQSARGTKQNLDGSSEANKLDT---DEGMKEEDQLSGDEDDTEELDEDQDISDNDSEEN 561
Query: 373 QQRVEEDSIMG-----TPANRDQEVDMELDDAEYSRIFNDDSVCHDQNESENNGS 422
+E DS M + ++ D+E+ +LDD++ +DDS DQ++ N S
Sbjct: 562 DDELELDSDMDEENDVSESDDDEELSEKLDDSDEGSDQDDDS---DQDDKSKNSS 613
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 32.7 bits (71), Expect = 2.5
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 1002 ENCMYEVLNERVPSYSYAQLSDWWCDESKMLRWIPVEYYLTKLSGTVRMLQKLDIINRTS 1061
E C E R P++SY ++S +WCD K ++ I + + +++ K+ +
Sbjct: 323 EEC--ENCKNRKPAFSYGEISPFWCDRLKTIK-IKCTEHDERFVALLQLFCKILVCIEEV 379
Query: 1062 ELARLFGLQWWEVLSRGSQF-RVESLMLRAARPLNLIALSPTIKQRSTMRAPETLPLIFE 1120
++ R +G + ++ G F R L LRA + + +QR A E L +
Sbjct: 380 DIDRQWGS---DSIASGEAFPRTPRLRLRAVSHGAMRRGASQAQQRKDAEAAEQLDRLMR 436
Query: 1121 PES 1123
S
Sbjct: 437 EAS 439
>09_02_0023 + 3076899-3077066,3077144-3077203,3077561-3077686,
3077757-3077903,3077940-3078431
Length = 330
Score = 32.7 bits (71), Expect = 2.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1016 YSYAQLSDWWCDESKMLRWIPVEYYLTKLSGTVRMLQKL 1054
+ + WW D SK L P YYLTK+ +++ + L
Sbjct: 23 FKHVTFDSWWSDWSKHLFSAPSFYYLTKIDNRIKISKPL 61
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 31.9 bits (69), Expect = 4.4
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 521 TEIKSEETFIDAVSRITAKQNIVKLMNKSEIYDLQNKFVPTAGPSNKPVDCDNTEMGNSS 580
T+ +EE F+ A ++ N+ K +N I+D++ K+ T+ S+
Sbjct: 308 TQTLTEEEFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYFSHRFFAGMTTTQRSESA 367
Query: 581 NN--ELELSPDGNELGIVSFYDASKVFDDSFNQTFLQE-QTNCD 621
N+ ++ +SP + G V YD + F++ + +E QT+ D
Sbjct: 368 NHVFKMFVSPSSSMNGFVKRYD--RFFNEKLQKEDSEEFQTSND 409
>03_06_0193 + 32243458-32243556,32243566-32244273
Length = 268
Score = 31.5 bits (68), Expect = 5.9
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 327 EHEEEDLDTTIVDENLVLNSSMSLQYSQVLLNSEDMELIDMLHDMDQQRVEEDSIMGTPA 386
EHE ++ N ++S+++ ED++ D +D + EED I P
Sbjct: 119 EHENAEISDVAERNNDHVDSNIAAAEDTTFSGEEDLD--DETNDDIECFDEEDGICENPD 176
Query: 387 NRDQEVDMELDDAEYSRIFNDDSVCHD 413
+ + + ELDD + S + +DD C+D
Sbjct: 177 DEIFDDEEELDDDDES-LDDDDIECYD 202
>02_04_0082 - 19559626-19560152,19560927-19561149
Length = 249
Score = 31.5 bits (68), Expect = 5.9
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 284 EHAYYPAETLGDTQLFKAVDVSIHLPSKDLDLTLNRTTKMNLNEHEEEDLDTTIVDENLV 343
+H+Y + DT D + +D L R +K+NL + ED T+ ++ +
Sbjct: 90 DHSYSFVSVVEDTMGDAVEDKMYQVVKEDEPKELLRDSKVNLMANVVED---TMKEKEIN 146
Query: 344 LNSSMSLQYSQVLLNSEDMELIDMLHDMDQQRVEEDSIMGTPANRDQEVDMELDDAEYSR 403
+ M YS L+ + M+ MDQQ VE+ + T D++ ++ + + +
Sbjct: 147 EDDHMGW-YSLALVVEDTMDQQVGADIMDQQVVEDSLVTYTMEESDEDEYLKAEYEKGAL 205
Query: 404 IF-NDDSVCHDQNESE 418
IF D++ ++ E+E
Sbjct: 206 IFARDEANALERKEAE 221
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 31.5 bits (68), Expect = 5.9
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1225 SMKMQNDEAVKKAMHSRQLGLKLIANVTYGYTAANFSGRMPCVEVADSVVAKGRETLERA 1284
S+K+Q + + S QL K I N YGY R +E+A V G + ++ A
Sbjct: 841 SIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRK-GARWYSMEMAGVVTYTGAKIIQNA 899
Query: 1285 IKLVRENTTWNAKVIYGDTDSMFVLVPG 1312
LV + K + DTD ++ ++PG
Sbjct: 900 RLLVDK----IGKPLELDTDGIWCVLPG 923
>04_04_1310 -
32517074-32517193,32517295-32517360,32517468-32517558,
32517741-32517870,32517944-32518032,32518300-32518376,
32518539-32518607,32518800-32518874,32519040-32519135,
32519232-32519396
Length = 325
Score = 31.1 bits (67), Expect = 7.8
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 764 IQPVVRPPTSEQVKKWINEQKALQLLSQFSSEQAISKNMDDFNNSQALGLNEDEINSSIV 823
+Q + SE+VK+ +++ K L ++SS+ +S+ LG+ E N +I
Sbjct: 49 LQAAIDKKDSEEVKQAMDQLKELGWAKRWSSQPYVSRRTTSLRELTTLGIKNAE-NLAIP 107
Query: 824 SIENCESADFLTSMV 838
S+ N A FL ++V
Sbjct: 108 SVRN--DAAFLFTVV 120
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,492,436
Number of Sequences: 37544
Number of extensions: 1882865
Number of successful extensions: 4478
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4441
Number of HSP's gapped (non-prelim): 38
length of query: 1644
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1552
effective length of database: 11,339,300
effective search space: 17598593600
effective search space used: 17598593600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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