GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002414-TA|BGIBMGA002414-PA|IPR013026|Tetratricopeptide
region, IPR001440|Tetratricopeptide TPR_1
         (243 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 201 KELDEHDKYETSFNDLENKFPQHRDLTEYFLNKRENFEEDDD 242
           KE+DE ++ E   +    +  + RD  E   +     EED+D
Sbjct: 868 KEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAKEEDED 909


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 204 DEHDKYETSFNDLENKFPQHRDLTEYFLNKRENFEEDDDN 243
           DE +K+E +  DL N+F + R            + +D DN
Sbjct: 4   DEMEKFEITDYDLNNEFYRGRKKLSKHQQIYGIWADDSDN 43


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 203 LDEHDKYETSFNDLENKFPQHRDLTEYFL 231
           L   ++ ET F +LE   P++ +  +YF+
Sbjct: 301 LGSPEEAETFFRELEAPCPRNYNPADYFI 329


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 203 LDEHDKYETSFNDLENKFPQHRDLTEYFL 231
           L   ++ ET F +LE   P++ +  +YF+
Sbjct: 301 LGSPEEAETFFRELEAPCPRNYNPADYFI 329


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 69  EVTMNIKDDRTVINKKTRKT 88
           E  + ++ DR +I+ KT+KT
Sbjct: 755 EFDVKLQSDRLMIDYKTQKT 774


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,956
Number of Sequences: 317
Number of extensions: 2050
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 114,650
effective HSP length: 55
effective length of query: 188
effective length of database: 97,215
effective search space: 18276420
effective search space used: 18276420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)