GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002414-TA|BGIBMGA002414-PA|IPR013026|Tetratricopeptide
region, IPR001440|Tetratricopeptide TPR_1
         (243 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 3   LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 43
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 573 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 609


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 68  EEVTMNIKDDRTVINKKTRKTCDDSSEIDKETWMAEVSKDAERRALDRKI 117
           +E    ++++   I+ ++R T ++  +  +E W+ +  ++ E   L RK+
Sbjct: 12  DEKFKQLRNEDNKIDLRSR-TKEERLQYRREAWLVQQEREQEYEKLKRKM 60


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 3   LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 43
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 541 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 577


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,494
Number of Sequences: 429
Number of extensions: 3480
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 140,377
effective HSP length: 56
effective length of query: 187
effective length of database: 116,353
effective search space: 21758011
effective search space used: 21758011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)