GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002413-TA|BGIBMGA002413-PA|IPR003961|Fibronectin, type
III, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR008957|Fibronectin, type
III-like fold, IPR013098|Immunoglobulin I-set
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    31   0.69 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    31   0.69 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   3.7  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   8.5  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 371 VEFQSLLLKKYGNIGTYVVHISSTYFYTPYDVKVQAFNDIGPGPESEVVTIYSAEDMPQV 430
           +EF S+LL      G+ ++ IS  +       +  AF+D+    + E+   Y  + +P  
Sbjct: 29  IEFPSVLLPNDATAGS-IIDISVHHNKEEEIARETAFDDV----QKEIFETYG-QKLP-- 80

Query: 431 APQLVSARSFNSTALNVTWNPIDQSRERLRGKLIGHRLKYWKQENKEEECIYYLSRTTRN 490
           +P ++  ++   T++ + W+P+  S  RL+   +          N           TT N
Sbjct: 81  SPPVLKLKNATQTSIVLEWDPLQLSTARLKSLCL--------YRNNVRVLNISNPMTTHN 132

Query: 491 WALIVGLQPDTYYYVKVMAFNSAGEGPESERYLERTFR 528
            A + GL  DT Y   ++   +AG  P S+    +T R
Sbjct: 133 -AKLSGLSLDTEYDFSLVLDTTAGTFP-SKHITIKTLR 168


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 307 PGQPSAPSPQFSTSGDKPYEAPANVSGGGGKTGDLT 342
           P +P+AP P+F      P +A A  S  G + GDL+
Sbjct: 356 PSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLS 391


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 70  AGGKRFITENGNLIIRQLSRDDEG--VYTCVA 99
           A  ++F+   GNLIIRQL    EG  VYT  A
Sbjct: 525 AEDRKFLNSRGNLIIRQLCNYIEGERVYTSFA 556


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 256 HWNSTWYVISENIPNVM 272
           HWN+T+   SEN PN++
Sbjct: 210 HWNATYATKSENYPNLV 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,323
Number of Sequences: 5004
Number of extensions: 157168
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 4
length of query: 674
length of database: 2,362,478
effective HSP length: 77
effective length of query: 597
effective length of database: 1,977,170
effective search space: 1180370490
effective search space used: 1180370490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)