Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002413-TA|BGIBMGA002413-PA|IPR003961|Fibronectin, type
III, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR008957|Fibronectin, type
III-like fold, IPR013098|Immunoglobulin I-set
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0660 + 10244962-10245606 32 1.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 31 3.0
01_01_0927 + 7332980-7333186,7334511-7335269,7336287-7336442,733... 31 3.0
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 31 4.0
08_02_0352 + 16146025-16146642 30 6.9
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 9.1
11_06_0342 - 22523610-22524332 29 9.1
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 29 9.1
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 9.1
>03_02_0660 + 10244962-10245606
Length = 214
Score = 31.9 bits (69), Expect = 1.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 298 RIQAINILGP--GQPSAPSPQFSTSGDKPYEAPANVSGGGGKTGDLTITWTPLPTSLQNG 355
R+Q + GP G P P S ++ E GGGG +G L W +PT +NG
Sbjct: 102 RLQEFLLAGPPPGFPPKTMPPASVKKEEEEECQDEAVGGGGGSGGLLGRWV-VPTRPRNG 160
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 308 GQPSAPS-PQFSTSGDKPYEAPANVSGGGG 336
G P+AP P +S S P P N+SGGGG
Sbjct: 68 GVPAAPPHPTYSISCSTPPRPPLNLSGGGG 97
>01_01_0927 +
7332980-7333186,7334511-7335269,7336287-7336442,
7336615-7337538,7338905-7339201
Length = 780
Score = 31.1 bits (67), Expect = 3.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 314 SPQFSTSGDKPYEAPANVSGGGGKTGDLTIT-WTPLPTSLQNGPGIHYKIFWRRNGSEV 371
SP+F + P A + GGG+ T T W P ++ G IH WRR ++
Sbjct: 695 SPRFVLVEEDPALRFAKIRAGGGRWKKFTSTPWGSNPKPVRFGSKIHQDSCWRRKMEKI 753
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 30.7 bits (66), Expect = 4.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 301 AINILGPGQPSAPSPQFSTSGDKPYEAPANVSGGGGKTGDLTITWTPLPTSL-QNGPGIH 359
A+ + P P AP+P +S + AP GGGG G + P+ T L N
Sbjct: 3 ALRLPTPPPPRAPAPWLHSSHRRRVAAPRGAGGGGGGGG--AVPPPPVRTLLIDNYDSYT 60
Query: 360 YKIF 363
Y IF
Sbjct: 61 YNIF 64
>08_02_0352 + 16146025-16146642
Length = 205
Score = 29.9 bits (64), Expect = 6.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 40 SEGGNVTLKCKPEAAPKPTFTWKKDNIVIGAGGKR 74
S+G P+A P+P +W+ D + G GG R
Sbjct: 48 SDGREAAASGGPDADPRPLISWRPDPVGGGGGGVR 82
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 465 GHRLKYWKQENKEEECIYYLSRTTRNWALIVGLQPDTYYYVKVMAFNSAGEGPESE 520
G++L YW + + + + L+ LQP T Y ++++F G+ SE
Sbjct: 563 GYKLWYWNSREQPSTRVPAIFPKDQRRILVSNLQPCTEYAFRIISFTEYGDLGHSE 618
>11_06_0342 - 22523610-22524332
Length = 240
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 398 TPYDVKVQAFNDIGPGPESEVVTIYSAEDMPQVAPQLVSA 437
T Y VK D G G + Y D PQ PQLV A
Sbjct: 78 TRYGVKDPGRPDAGNGKAARSAPSYHVNDRPQPGPQLVGA 117
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 29.5 bits (63), Expect = 9.1
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 328 PANVSGGGGKTGDLTITWTPLPTSLQNGPGIHYKIFWRRNGSEVEFQSLLLKKYGNIGTY 387
P V G +LT L L+ G +H + S F + + +
Sbjct: 97 PIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSVQPFPEEITQAESQL--- 153
Query: 388 VVHISSTYFYTPYDVKVQAFNDIGPGPESEVVTIY 422
VV+ S + +PY VKVQ + PG E T Y
Sbjct: 154 VVYQDSAQYLSPYPVKVQTLSIRLPGGRVESYTKY 188
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 372 EFQSLLLKKYGNIGTYVVHI--SSTYFYTPYDVKVQAF 407
E L + + ++GTY + I S T+F T +D+KVQ +
Sbjct: 376 ELHQLFILEILDVGTYFMKIPVSDTWFLTSHDIKVQVW 413
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,524
Number of Sequences: 37544
Number of extensions: 1092523
Number of successful extensions: 2554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2549
Number of HSP's gapped (non-prelim): 10
length of query: 674
length of database: 14,793,348
effective HSP length: 87
effective length of query: 587
effective length of database: 11,527,020
effective search space: 6766360740
effective search space used: 6766360740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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