GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002411-TA|BGIBMGA002411-PA|undefined
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   0.34 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   0.78 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   1.0  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   1.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   2.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   2.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   3.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    24   3.1  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   4.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    24   4.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   4.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   5.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    23   5.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   5.5  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    23   7.2  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   7.2  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.2  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    23   7.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    23   9.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   9.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.6  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 24 DTSTVRKLPSVPTSSSLPAAESRESLV-RPRDSSLPSPS 61
          DT  V+ + S P+SSS    ES+E      +D S PSPS
Sbjct: 27 DTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPS 65


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 20   PLPYDTSTVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSKLAVYXXXXXXXXXXXKE 79
            P+P  T+    +P+ P+S +   +  R S+  P  ++ PSP+  ++             +
Sbjct: 1228 PVPVPTAKAPPVPA-PSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSK 1286

Query: 80   NNKRTH 85
            +    H
Sbjct: 1287 SKAERH 1292


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 26  STVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSK 62
           STV   P   T SS  ++ +RE+L+    S++ SP+K
Sbjct: 372 STVTSTPVFSTDSSPLSSRTRENLLSLIPSAVSSPTK 408


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 20  PLPYDTSTVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSKLAVY 66
           PLP +  ++  +   P+  SLP   S   L  P   +  +P  +  Y
Sbjct: 721 PLPLELLSISYIEDSPSRGSLPRRPSSALLTNPISITKSNPPPVKAY 767


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 26  STVRKLPSVPTSSSLPAAESRESLVRPRDSSLPS 59
           S    LPS+P+SSS P+  S         + +PS
Sbjct: 114 SNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPS 147


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 22   PYDTSTVRKLPSVPTSSSLP---AAESRESLVRPRDSSLPSPSKLA 64
            P+  S +   P  P +  +P    A  R S   P   S+PSPS L+
Sbjct: 1002 PHGGSQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALS 1047


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 24  DTSTVRKLPSVPTSSSL 40
           DTS+ R+LPS+PT   L
Sbjct: 126 DTSSWRELPSIPTLEEL 142


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  KLPSVPTSSSL-PAAESRESLVRPRDSSLPSPSKLA 64
           ++P   +S++  P+  +  S   P++SSL SPSK++
Sbjct: 65  QIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKIS 100


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 24  DTSTVRKLPSVPTSSSLPAAESRESLVRPRDSSLP 58
           D   + +  ++PT +  P + + ES+ RP  S+ P
Sbjct: 356 DEEEIEQAINIPTLAPYPISYAAESVPRPATSASP 390


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 32  PSVPTSSSLPAAESRE-SLVRPRDSSLPSPS 61
           PS  TS+++P  E+R  S+  P +S   S S
Sbjct: 134 PSASTSTAVPTTEARNTSITEPANSPSSSSS 164


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 21  LPYDTST-VRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSK 62
           L YD    + K PS P SSS P+A +  +    R +  P  S+
Sbjct: 302 LNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSE 344


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 35  PTSSSLPAAESRESLVRPRDSSLPSPSKLA 64
           P+SSS   ++S  ++++  +  +PSPS L+
Sbjct: 475 PSSSSRRRSQSLSAMLKTSNPYMPSPSLLS 504


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 24  DTSTVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSKL 63
           D +TV+    +P  S  P+A + ++      + +P  SKL
Sbjct: 391 DPNTVKSAQHIPRMSPSPSASALKTQSHVPSAKVPPTSKL 430


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 31  LPSVPTSSSLPAAESRESLVRPRD 54
           +P V  +S LPA  +   L+RPR+
Sbjct: 190 VPPVNNASPLPALNTLPQLLRPRN 213


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 22   PYDTSTVRKLPSVPTSSSLPAAESRESLVR--PRDSSLPSP 60
            P   S +  LPS    S    +   E+L+R   ++SS+P P
Sbjct: 1405 PLSPSKISNLPSSQPGSPSKRSGKMEALIRNFDQNSSIPDP 1445


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 31  LPSVPT-SSSLPAAESRESLVRPRDSSLPSPSKL 63
           L S PT +S+LP + SR       DS L SP  L
Sbjct: 187 LNSSPTFNSNLPISSSRFEKTSLSDSKLVSPEPL 220


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 27  TVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSKL 63
           ++ + P+ P +++   A S  SL R     LP PS L
Sbjct: 120 SISETPTKPFTATTAIAGSAGSLPRNTTIGLPGPSAL 156


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 700

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 31 LPSVPTSSSLPAAESRESLVRPRDSSLPSP 60
          LPS+P S++LP   +R S    R + LP P
Sbjct: 39 LPSIPRSTALPNLSNRLSPYSHR-NYLPIP 67


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)

Query: 33  SVPTSSSLPAAESRESLVRPRDSSLPSPSKLAV 65
           SVPT S+L   +S+   V P     PSP  L V
Sbjct: 544 SVPTDSTLTDTKSKSVFVHP-----PSPQSLYV 571


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 26  STVRKLPSVPTSSSLPAAESRESLVRPRDSSLPSPSKLA 64
           ST+     VPT+SS P + S  S     +S++PS S ++
Sbjct: 113 STIPTTSPVPTTSSTPTSSSILS-----NSTIPSSSSIS 146


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 20  PLPYDTSTVRKLPSVPTSSSLPAAESRESLVRP 52
           P P     V ++PSVP   ++P      S+ +P
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 37  SSSLPAAESRESLVRPRDSSLPSPSKLAV 65
           S+ +P+A S ES+     S +P P + ++
Sbjct: 367 SNHVPSAPSNESVSSAAPSKIPVPEEASI 395


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.124    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,521
Number of Sequences: 5004
Number of extensions: 10512
Number of successful extensions: 51
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 24
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)