GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002411-TA|BGIBMGA002411-PA|undefined
         (91 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 22  PYDTSTVRKLPSVP-TSSSLPAAESRESLVRPRDSSLPS-PSKL 63
           P     +RK+PS+P     +    + +S +   + +LPS PS L
Sbjct: 639 PLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTL 682


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 28  VRKLPSVPTSSSLPAAESRESLVRPRDSSLPS 59
           +RK+    T+SSL   ES    ++P  SS  S
Sbjct: 420 IRKISDCSTTSSLSGDESDVVELQPVKSSKSS 451


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 23  YDTSTVRKLPSVPTSSSLPAAESRESLVRPRDSSLPS 59
           Y T+T+    S P S SLPA+ + +S V   +SS  S
Sbjct: 225 YTTATMATT-STPGSGSLPASPA-DSGVSDVESSTSS 259


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 22  PYDTSTVRKLPSVPTSSSLPAAE 44
           P    T+R +   P   S+P+AE
Sbjct: 974 PATRYTIRVIAEGPAGRSVPSAE 996


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 22  PYDTSTVRKLPSVPTSSSLPAAE 44
           P    T+R +   P   S+P+AE
Sbjct: 970 PATRYTIRVIAEGPAGRSVPSAE 992


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.124    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,751
Number of Sequences: 429
Number of extensions: 565
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 140,377
effective HSP length: 48
effective length of query: 43
effective length of database: 119,785
effective search space:  5150755
effective search space used:  5150755
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)