GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002410-TA|BGIBMGA002410-PA|IPR009114|Angiomotin
         (145 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.20 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   0.82 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   2.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   2.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      20   7.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 97  YSPHNDNSSGIGFESSSLRLEEQLAALDSRLERAPVPAV 135
           Y+PH   SSG+G   S + +      L   LE  P P V
Sbjct: 77  YAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVPFPQV 115


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 125 SRLERAPVPAVSYRHPQH 142
           SRLE++P+ A  Y H  H
Sbjct: 93  SRLEKSPLLANGYNHSPH 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 18/83 (21%), Positives = 32/83 (38%)

Query: 39  RDAMIKVLQKHTSAAYEAGGASLRNHSSREELVALSSGASFSSAEGVTGRYRNLTRRNYS 98
           R  +   +Q       EA  +  R  +  +EL+   S A   S     GR+  +    Y 
Sbjct: 111 RQTLYTPVQYFKDLVAEAYVSPFRIDNESQELLKYPSFARGRSLYDSRGRHSEIVETVYD 170

Query: 99  PHNDNSSGIGFESSSLRLEEQLA 121
           P  D+      ++++   +E LA
Sbjct: 171 PREDDRVVCYVQAAARYRKEPLA 193


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
          protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 61 LRNHSSREELVALSSGASFSSAEGVTGRYR 90
          LR HS  +    +    SFS A  +T   R
Sbjct: 13 LRTHSGEKPYRCIDCNKSFSQAANLTAHVR 42


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 61  LRNHSSREELVALSSGASFSSAEGVTGRYR 90
           LR HS  +    +    SFS A  +T   R
Sbjct: 269 LRTHSGEKPYRCIDCNKSFSQAANLTAHVR 298


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 104 SSGIGFESSSLRLEEQLAALD 124
           S+G+    SSL++ E++ ALD
Sbjct: 120 STGLRRNLSSLQIGEKIQALD 140


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.123    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,828
Number of Sequences: 317
Number of extensions: 895
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 114,650
effective HSP length: 51
effective length of query: 94
effective length of database: 98,483
effective search space:  9257402
effective search space used:  9257402
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)