GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002408-TA|BGIBMGA002408-PA|undefined
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   1.3  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   2.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   2.3  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   3.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    24   5.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    23   6.9  

>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 22  RVHESREMERQIFDKELFIDEIEKRPATWDLVSPD 56
           RV  SR+M+  I +K+L++   E  P T  L+  D
Sbjct: 129 RVTVSRKMKDVIREKDLWVYRFENEPETNSLIRMD 163


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 19  TPERVHESREMERQIFDKELFIDEIEKRPATWDLVSPDYAN 59
           T E+  +S  ME+Q+FD    IDE+     T    SPD A+
Sbjct: 276 TIEQQRQSAHMEQQVFDALPQIDELLD---TLSTTSPDAAD 313


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 1   MHASRDTRDALLRPANTRTPERVHESREMERQIFDKELFIDEIEKRPATWDLVSPDYANR 60
           MH     RD +      R+P  + E  ++ + +     ++      P  W L+S +  NR
Sbjct: 290 MHCRDHWRDYIQPGEINRSPWTIQEKEKLIKTV---NQYLQSNPSSPIQWSLISKNMRNR 346

Query: 61  ILKCRSWEELVLI 73
                 W+   LI
Sbjct: 347 HRHHCRWKYYTLI 359


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 52  LVSPDYANRILKCRSWEE 69
           +VSP+ A+RIL C  +EE
Sbjct: 401 MVSPEIASRILDCYVFEE 418


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 5   RDTRDALLRPANTRTPERVHESREMERQIFDK 36
           +DTR+ ++R       ER+ E    ER+ F++
Sbjct: 314 KDTRENVVRRQTLTAAERLAEVEAAEREAFEQ 345


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 25  ESREMERQIFDKELFIDEIEKRP 47
           + +++ERQ  D ELF+  +E+ P
Sbjct: 426 KKQDIERQERDYELFLQNLEEDP 448


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.134    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,697
Number of Sequences: 5004
Number of extensions: 14474
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 2,362,478
effective HSP length: 63
effective length of query: 38
effective length of database: 2,047,226
effective search space: 77794588
effective search space used: 77794588
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)