GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002408-TA|BGIBMGA002408-PA|undefined
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0244 - 23869222-23870322,23871456-23871521                       27   2.0  
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    27   3.5  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    27   3.5  
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041...    27   3.5  
02_04_0456 - 23089507-23090607,23091561-23091635                       27   3.5  
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316...    26   4.6  
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    26   6.0  
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33...    25   8.0  

>04_04_0244 - 23869222-23870322,23871456-23871521
          Length = 388

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 27  REMERQIFDKELFIDEIEKRPATWDLVSPDYANRIL 62
           RE  R++FD  LF +E++     W+ +SP  +  +L
Sbjct: 107 RETPRRVFDAVLFSNELDILEIRWNELSPYVSEFVL 142


>04_04_1299 +
           32450998-32451134,32451575-32452304,32452856-32453053,
           32453398-32454065,32454555-32454978,32455917-32456009,
           32456101-32456295,32456378-32456470,32456718-32456930,
           32457015-32457104,32457239-32457400
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 14  PANTRTPERVHESREMERQIFDKELFIDEIEKRPATWDLVSPDYANRILKC 64
           PA     +   ++R+    ++DK L +D ++   +   L++  Y N I  C
Sbjct: 236 PAKAPMSKESKDARKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHAC 286


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 2   HASRDTRDALLRPANTRTPERVHESREMERQIFDKELFIDEIE 44
           + S+     L R     TP   H +RE+ R+ +D ++ +D  E
Sbjct: 869 YESKGVIGKLYREIKKHTPHIKHFTREVARRSYDTDMIVDGYE 911


>02_04_0458 -
           23102262-23102377,23102505-23102661,23103094-23104140,
           23104357-23104500,23105389-23105457
          Length = 510

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 27  REMERQIFDKELFIDEIEKRPATWDLVSPDYANRIL 62
           RE  R++FD  LF +E++     W  +SP  +  +L
Sbjct: 156 RETPRRVFDAVLFSNELDILDIRWHELSPYVSEFVL 191


>02_04_0456 - 23089507-23090607,23091561-23091635
          Length = 391

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 27  REMERQIFDKELFIDEIEKRPATWDLVSPDYANRIL 62
           RE  R++FD  LF +E++     W  +SP  +  +L
Sbjct: 110 RETPRRVFDAVLFSNELDILDIRWHELSPYVSEFVL 145


>10_06_0146 +
          11230357-11230364,11230847-11230893,11231535-11231642,
          11231789-11231828,11231995-11232757
          Length = 321

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 37 ELFIDEIEKRPATWD 51
          E FIDE E++P TW+
Sbjct: 63 EKFIDEAERQPITWE 77


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 5   RDTRDALLRPANTRTPER-VHESREMERQIFDKELFIDEIEKR 46
           + T +  +R    R  E  + E +E ER++ + EL+++E+  R
Sbjct: 400 KTTTEGRMRAKQRRAEEEALREKQEEERRLENPELYLEELRAR 442


>08_01_0047 -
           328895-329404,329492-329821,330253-330626,330712-330937,
           331026-331475
          Length = 629

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 1   MHASRDTRDALLRPANTRTPERV 23
           +HA  + RD L+RP +  TP ++
Sbjct: 117 LHAIGELRDELIRPPSLDTPNKI 139


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.134    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,506
Number of Sequences: 37544
Number of extensions: 88857
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 8
length of query: 101
length of database: 14,793,348
effective HSP length: 71
effective length of query: 30
effective length of database: 12,127,724
effective search space: 363831720
effective search space used: 363831720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)