GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002408-TA|BGIBMGA002408-PA|undefined
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.6  
SB_25095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.7  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       26   6.3  
SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   6.3  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       25   8.3  
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)                    25   8.3  

>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 37 ELFIDEIEKRPATWDLVSPDYANRILKCRSWEEL 70
          E  ID  E+RP  WD+ + +Y  +  + R+ EE+
Sbjct: 38 EQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEI 71


>SB_25095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 16 NTRTPERVHESREME-RQIFDKELFIDEIEKRPATWDLVSPDYAN 59
          N + P  V   R  +  +I D++ +  E E+RP+ WD   P   N
Sbjct: 43 NNQDPRPVIRLRHAQLAEIEDEKKYRKEKEERPSAWDRTRPGKQN 87


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 4    SRDTRDALLRPANTRTPERVHES---REMERQIFDKELFIDEIEKRPAT 49
            SR  +  ++ P +T  PE+  E+   RE E+Q  DK     E E +P T
Sbjct: 975  SRSRQRKVITP-DTEEPEKTFETETQREQEKQHVDKGKTPSESESKPTT 1022


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 9   DALLRPANTRTPERVHESREMERQIFDKELFIDE-IEKRPATWDLVSPDYANRILKCRSW 67
           D L+ P + R   +  E   +E   F+    I   ++ RP   D  +   + R L CR+W
Sbjct: 338 DPLINPISHRHAVKSAEPLPLEDDAFELPEEIQPFLQDRPLYTDNTANGMSERSLSCRAW 397


>SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 2   HASRDTRDALLRPANTRTPERVHESREMERQIFDKELFIDEIEKRPATW 50
           HA R     L    ++ TP  +   R+ + +I D  L   E +K+ A W
Sbjct: 519 HAERMNIPQLTPTKHSSTPSPIQTHRKPQERIHDVLLTKTEAQKKEAFW 567


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 21  ERVHESREMERQIFDKELFIDEIEKRPA 48
           E  ++ RE+ERQ+ + +   D IEKR A
Sbjct: 234 ELENDKRELERQVNELKAKCDAIEKREA 261


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 12  LRPANTRTPERVHESREMERQIFDKELFIDEIEKRPATWDLVSPDYANRILKCRSWEE 69
           L+ A  R  + + E++  ++++   +L I+EI K  A+ +         I KC    E
Sbjct: 619 LKKAKKRAEQSIKETKTKQQEVEGMQLEIEEIVKEMASIEEQVTKVDENIAKCEEQVE 676


>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 9   DALLRPANTRTPERVHES 26
           DALLRP +T  P  VH++
Sbjct: 861 DALLRPVHTGIPPMVHQT 878


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.134    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,716
Number of Sequences: 59808
Number of extensions: 105991
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 9
length of query: 101
length of database: 16,821,457
effective HSP length: 71
effective length of query: 30
effective length of database: 12,575,089
effective search space: 377252670
effective search space used: 377252670
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)