GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002408-TA|BGIBMGA002408-PA|undefined
         (101 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 23   VHESREMERQIFDKELFIDEIEKRPA 48
            V +S +  RQ+ +  LFI E+++  A
Sbjct: 1316 VLQSSDRLRQLPEGSLFIKEVDRTDA 1341


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 15  ANTRTPERVHESREMERQIFDKELFIDEIEKRPATWDLVS 54
           +++R P  +H+S    R I +    +++  K    W  V+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVA 515


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 15  ANTRTPERVHESREMERQIFDKELFIDEIEKRPATWDLVS 54
           +++R P  +H+S    R I +    +++  K    W  V+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVA 515


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.134    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,359
Number of Sequences: 429
Number of extensions: 894
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 140,377
effective HSP length: 49
effective length of query: 52
effective length of database: 119,356
effective search space:  6206512
effective search space used:  6206512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)