GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002407-TA|BGIBMGA002407-PA|IPR001763|Rhodanese-like
         (101 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   0.47 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   3.3  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    20   5.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   5.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    19   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   7.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 0.47
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 14 LKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLN 48
          +K+I QP    +  R   E  + G IP + + P N
Sbjct: 65 VKIIEQPASKALRFRYECEGRSAGSIPGASSTPEN 99


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 40  PSSINIPLNSVQEVLVSMSNEEFKKQYQRNKPSSTDE 76
           PSS  +PLN++Q   +S S   +K     N  + T +
Sbjct: 354 PSSNLMPLNNIQN--LSQSGINYKDTNDNNVSAVTTQ 388


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 62  FKKQYQRNKPSSTD 75
           FKK+ +RN+ S+T+
Sbjct: 328 FKKKKRRNRESTTN 341


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 14  LKVIHQ--PEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLV 55
           L  IH   P++       P +          ++IPLN++ EV++
Sbjct: 541 LSQIHDLSPDQFCNGDNRPPDCGQNCMCTHQVDIPLNAIVEVVL 584


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
          protein.
          Length = 677

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 77 LIFYCQSG 84
          +IFYCQ G
Sbjct: 73 VIFYCQEG 80


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 77  LIFYCQSG 84
           +IFYCQ G
Sbjct: 306 VIFYCQEG 313


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 77  LIFYCQSG 84
           +IFYCQ G
Sbjct: 306 VIFYCQEG 313


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,682
Number of Sequences: 317
Number of extensions: 842
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 114,650
effective HSP length: 48
effective length of query: 53
effective length of database: 99,434
effective search space:  5270002
effective search space used:  5270002
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)