Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002407-TA|BGIBMGA002407-PA|IPR001763|Rhodanese-like
(101 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 30 0.28
09_02_0210 + 5812428-5812468,5812633-5812895,5814064-5814214,581... 29 0.49
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 28 1.5
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 27 2.0
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 27 2.0
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656... 27 2.6
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 27 3.5
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 26 6.0
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 25 8.0
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 30.3 bits (65), Expect = 0.28
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 8 VSYEDVLKVIHQPEK-VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQY 66
V+ ++ +++ E+ +L+DVR P + S+NIPL+ ++E L M K
Sbjct: 325 VTCKEYKRLVDNGERHLLLDVR-PAHHFQIASVSQSLNIPLSELEEKL-QMLETSLKDTT 382
Query: 67 QRNKPSSTDELIFYCQSGRRSTEALDIALKLGY 99
+ L C+ G S A+ + + G+
Sbjct: 383 DASSSDKPPSLYVVCRRGNDSQIAVQLLREKGF 415
>09_02_0210 +
5812428-5812468,5812633-5812895,5814064-5814214,
5814678-5814763,5815182-5815286,5815444-5815504,
5816078-5816087
Length = 238
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 59 NEEFKKQYQRNKPSSTDELIFYCQSGRRSTEALDIALKLGY 99
N EF K ++K S +L+ CQ G RST A D+ + G+
Sbjct: 126 NLEFTKMV-KDKFSPESKLLVVCQEGLRSTGAADVLEREGF 165
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 8 VSYEDVLKVIHQPEK-VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQY 66
VS D KV+ +L+DVR P + SIN+PL+ ++E L + + ++
Sbjct: 331 VSCRDYKKVLDSGRPHLLVDVR-PSHHFQIASMAHSINVPLSLLEEKL-PLLRDSAREVS 388
Query: 67 QRNKPSSTDELIFYCQSGRRSTEALDIALKLGY 99
R + C+ G S A+ I + G+
Sbjct: 389 SRRDGRQHCPVYVICRRGNDSQVAVQILRENGF 421
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 47 LNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYCQSGRRSTEAL 91
+ S E LV NE+ K+ R KP++ EL F Q G + T A+
Sbjct: 676 IQSDLEELVKSLNEQCKRYGLRAKPTTLVELPFGWQPGIQETAAV 720
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 19 QPEKVL-IDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQY-QRNKPSSTDE 76
Q +K L + +R+ +N GKI SS N+ V + L S + +F+K N+P S+ +
Sbjct: 137 QSQKFLSLGLRSASRLN--GKINSSSNVKEEKVDQGLSSFPSADFQKDAGATNEPKSSSD 194
Query: 77 LIF 79
F
Sbjct: 195 SSF 197
>05_03_0510 +
14864430-14864792,14865234-14865485,14865573-14865671,
14865789-14866082,14866630-14867010
Length = 462
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 RVVSYEDVLKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQE 52
+ V +D +I P+ V+IDVRN E+ GK +++ NS +E
Sbjct: 222 KYVKPKDWNALISDPDTVVIDVRNMYEIR-IGKFKRAVDPCTNSFRE 267
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 33 VNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQ 67
VN K+ +IP+ +V + N EFKKQ++
Sbjct: 462 VNGVSKVGDGAHIPVTAVVFGSPQIGNPEFKKQFE 496
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 59 NEEFKKQYQRNKPSSTDELIFYC 81
N E +K Y ++ SSTD L YC
Sbjct: 628 NNERRKMYDQDMLSSTDSLYPYC 650
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 59 NEEFKKQYQRNKPSSTDELIFYC 81
N E +K Y ++ SSTD L YC
Sbjct: 643 NNERRKMYDQDMLSSTDALYPYC 665
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,232
Number of Sequences: 37544
Number of extensions: 94688
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 14,793,348
effective HSP length: 71
effective length of query: 30
effective length of database: 12,127,724
effective search space: 363831720
effective search space used: 363831720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)
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